Wall clock time and date at job start Tue Mar 31 2020 22:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86794 * 120.00086 * 2 1 4 4 H 1.48500 * 109.47585 * 270.00123 * 3 2 1 5 5 H 1.48505 * 109.47358 * 30.00394 * 3 2 1 6 6 H 1.48506 * 109.47158 * 150.00143 * 3 2 1 7 7 C 1.38812 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99949 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99919 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99881 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47129 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47152 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47153 * 180.02562 * 12 11 10 14 14 C 1.46503 * 119.99725 * 269.99696 * 13 12 11 15 15 C 1.53005 * 109.47469 * 275.64727 * 14 13 12 16 16 C 1.54265 * 110.02993 * 291.56131 * 15 14 13 17 17 C 1.54891 * 104.19709 * 217.10192 * 16 15 14 18 18 C 1.54895 * 102.74297 * 37.93991 * 17 16 15 19 19 C 1.53871 * 110.03628 * 174.39390 * 15 14 13 20 20 C 1.34777 * 120.00541 * 89.99969 * 13 12 11 21 21 O 1.21279 * 120.00211 * 185.12876 * 20 13 12 22 22 C 1.50695 * 119.99665 * 5.12238 * 20 13 12 23 23 H 1.09001 * 110.60663 * 33.46730 * 22 20 13 24 24 C 1.54106 * 110.66164 * 270.75282 * 22 20 13 25 25 N 1.47049 * 103.86422 * 241.72949 * 24 22 20 26 26 C 1.33952 * 109.17932 * 359.74857 * 25 24 22 27 27 O 1.21583 * 123.04339 * 179.97438 * 26 25 24 28 28 N 1.33942 * 113.91222 * 0.02562 * 26 25 24 29 29 H 0.96994 * 119.99395 * 359.97438 * 1 2 3 30 30 H 0.96994 * 120.00047 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.46848 * 60.00364 * 10 9 7 32 32 H 1.09007 * 109.47090 * 300.00717 * 10 9 7 33 33 H 1.08999 * 109.47269 * 59.99757 * 11 10 9 34 34 H 1.08999 * 109.46922 * 299.99973 * 11 10 9 35 35 H 1.08999 * 109.47438 * 59.99608 * 12 11 10 36 36 H 1.08999 * 109.46979 * 299.99686 * 12 11 10 37 37 H 1.09000 * 109.47137 * 35.64298 * 14 13 12 38 38 H 1.08998 * 109.47081 * 155.64915 * 14 13 12 39 39 H 1.08998 * 110.01493 * 52.99713 * 15 14 13 40 40 H 1.09006 * 110.48953 * 335.78157 * 16 15 14 41 41 H 1.09003 * 110.49238 * 98.41994 * 16 15 14 42 42 H 1.09001 * 110.75400 * 279.62723 * 17 16 15 43 43 H 1.09000 * 110.91818 * 156.32613 * 17 16 15 44 44 H 1.08996 * 110.48018 * 203.37874 * 18 17 16 45 45 H 1.09002 * 110.59635 * 80.79783 * 18 17 16 46 46 H 1.08997 * 110.02622 * 238.57163 * 19 15 14 47 47 H 1.09000 * 110.02918 * 359.97438 * 19 15 14 48 48 H 1.09002 * 110.75882 * 123.03218 * 24 22 20 49 49 H 1.09003 * 110.46469 * 0.27944 * 24 22 20 50 50 H 0.97004 * 125.41469 * 179.75847 * 25 24 22 51 51 H 0.97007 * 125.40948 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 6 1.8287 -6.1447 -0.0005 13 7 0.8767 -7.2582 -0.0018 14 6 0.3994 -7.8152 1.2664 15 6 1.4041 -8.8485 1.7800 16 6 1.4054 -10.0869 0.8601 17 6 1.5942 -11.2801 1.8294 18 6 0.7501 -10.8591 3.0580 19 6 0.9874 -9.3396 3.1775 20 6 0.4400 -7.7703 -1.1695 21 8 -0.4171 -8.6283 -1.1726 22 6 1.0167 -7.2766 -2.4712 23 1 2.0676 -7.0138 -2.3501 24 6 0.2171 -6.0686 -2.9968 25 7 -0.3167 -6.5332 -4.2858 26 6 0.0910 -7.7905 -4.5034 27 8 -0.2072 -8.4211 -5.4993 28 7 0.8559 -8.2904 -3.5242 29 1 -0.4849 0.8400 0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 2.6846 -3.7146 0.8895 32 1 2.6848 -3.7146 -0.8905 33 1 0.4374 -4.7617 -0.8914 34 1 0.4368 -4.7621 0.8886 35 1 2.4548 -6.2025 0.8898 36 1 2.4560 -6.2026 -0.8901 37 1 0.2954 -7.0145 1.9986 38 1 -0.5675 -8.2941 1.1118 39 1 2.4016 -8.4112 1.8199 40 1 0.4554 -10.1710 0.3321 41 1 2.2328 -10.0356 0.1524 42 1 2.6434 -11.3938 2.1022 43 1 1.2081 -12.2011 1.3928 44 1 1.0994 -11.3714 3.9544 45 1 -0.3061 -11.0681 2.8874 46 1 1.7832 -9.1412 3.8954 47 1 0.0697 -8.8414 3.4900 48 1 0.8690 -5.2069 -3.1408 49 1 -0.5951 -5.8225 -2.3128 50 1 -0.8751 -6.0120 -4.8837 51 1 1.2396 -9.1813 -3.5099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177402888.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:41 Heat of formation + Delta-G solvation = -51.712524 kcal Electronic energy + Delta-G solvation = -30581.214198 eV Core-core repulsion = 26515.613745 eV Total energy + Delta-G solvation = -4065.600452 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.59119 -39.94428 -38.18698 -36.56518 -36.30145 -34.81223 -33.18602 -32.35192 -30.96438 -29.57773 -29.10074 -28.74192 -25.67964 -25.31842 -23.45592 -22.97709 -21.91871 -21.22052 -20.90086 -20.06599 -19.31706 -18.15389 -17.80008 -17.15466 -16.73314 -16.40210 -15.75981 -15.64944 -15.44049 -14.99681 -14.85277 -14.67275 -14.29574 -14.11729 -13.92316 -13.62484 -13.57593 -13.45149 -13.28099 -12.95974 -12.61540 -12.38621 -12.24077 -12.03872 -11.52852 -11.34628 -11.26366 -11.13767 -11.04667 -10.98321 -10.90703 -10.80700 -10.70973 -10.59081 -10.41974 -10.30260 -10.14941 -9.81939 -9.52508 -9.02595 -8.96599 -8.79912 -7.02863 -5.85314 -3.14924 2.17595 2.51282 2.78292 3.09772 3.37793 3.43284 3.44948 3.76845 4.06058 4.09295 4.36727 4.39982 4.48511 4.49585 4.53054 4.82825 4.95663 5.01791 5.10516 5.16938 5.22414 5.25375 5.30109 5.35292 5.39968 5.43997 5.44789 5.47240 5.54712 5.64755 5.67517 5.72913 5.74831 5.79816 5.86633 6.00378 6.09026 6.09862 6.19043 6.20078 6.35168 6.64701 6.67341 6.80858 6.97096 7.12215 7.21001 7.61517 7.88928 8.33284 8.48343 9.44740 10.01168 10.34822 11.37305 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008667 B = 0.003201 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.996618 B = 8745.382033 C =11475.632599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.156 3.844 11 C -0.148 4.148 12 C 0.104 3.896 13 N -0.602 5.602 14 C 0.118 3.882 15 C -0.107 4.107 16 C -0.121 4.121 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.118 4.118 20 C 0.507 3.493 21 O -0.522 6.522 22 C 0.101 3.899 23 H 0.117 0.883 24 C 0.104 3.896 25 N -0.736 5.736 26 C 0.707 3.293 27 O -0.588 6.588 28 N -0.716 5.716 29 H 0.256 0.744 30 H 0.384 0.616 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.103 0.897 49 H 0.089 0.911 50 H 0.434 0.566 51 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.148 -19.916 2.911 20.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.028 3.972 11 C -0.187 4.187 12 C -0.019 4.019 13 N -0.334 5.334 14 C -0.004 4.004 15 C -0.126 4.126 16 C -0.158 4.158 17 C -0.163 4.163 18 C -0.162 4.162 19 C -0.156 4.156 20 C 0.292 3.708 21 O -0.398 6.398 22 C -0.009 4.009 23 H 0.134 0.866 24 C -0.022 4.022 25 N -0.399 5.399 26 C 0.406 3.594 27 O -0.466 6.466 28 N -0.378 5.378 29 H 0.066 0.934 30 H 0.217 0.783 31 H 0.038 0.962 32 H 0.037 0.963 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.121 0.879 49 H 0.107 0.893 50 H 0.276 0.724 51 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 3.666 -20.559 2.417 21.023 hybrid contribution 0.214 1.074 0.094 1.099 sum 3.880 -19.486 2.510 20.026 Atomic orbital electron populations 1.69654 1.05132 1.25784 1.57489 1.24749 0.95522 0.97759 1.02806 0.86201 0.78673 0.83788 0.77569 1.21660 1.21747 1.20724 1.19205 0.91023 0.84096 1.43073 0.91140 1.42332 1.05859 0.99939 1.89606 1.20548 0.93265 0.85430 0.98004 1.22250 0.99677 0.93650 1.03103 1.21777 0.91154 0.85182 1.03765 1.47981 1.45554 1.34269 1.05624 1.21720 0.98070 0.96406 0.84251 1.22174 0.99532 0.95938 0.94990 1.22497 1.02562 0.93545 0.97220 1.22487 0.99736 0.98077 0.95966 1.22342 1.00189 0.95616 0.98019 1.22127 1.01530 0.95831 0.96121 1.20663 0.82482 0.82421 0.85195 1.90718 1.30405 1.31766 1.86867 1.21951 1.01994 0.89297 0.87643 0.86588 1.22365 0.98576 0.95463 0.85795 1.45070 1.56610 1.14947 1.23260 1.15837 0.78531 0.82037 0.82971 1.90989 1.62933 1.62798 1.29921 1.44817 1.55939 1.17539 1.19529 0.93434 0.78282 0.96231 0.96259 0.91556 0.91237 0.89583 0.90086 0.90204 0.89369 0.90798 0.90154 0.92524 0.91865 0.91866 0.91928 0.91659 0.91628 0.91479 0.87880 0.89290 0.72415 0.72652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.00 13.06 55.49 0.72 -26.27 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 21.46 29.55 -169.99 -5.02 16.44 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.24 -6.37 9.99 -15.06 -0.15 -6.52 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.73 -16.82 5.60 -59.90 -0.34 -17.16 16 10 C 0.16 2.56 6.26 -4.04 -0.03 2.54 16 11 C -0.15 -1.78 5.65 -26.73 -0.15 -1.93 16 12 C 0.10 0.89 5.32 -4.04 -0.02 0.87 16 13 N -0.60 -5.55 2.39 -173.69 -0.41 -5.96 16 14 C 0.12 1.07 4.65 -4.04 -0.02 1.05 16 15 C -0.11 -0.86 3.14 -89.50 -0.28 -1.14 16 16 C -0.12 -1.07 5.66 -25.07 -0.14 -1.21 16 17 C -0.13 -0.97 6.91 -24.73 -0.17 -1.15 16 18 C -0.12 -0.92 6.83 -25.08 -0.17 -1.09 16 19 C -0.12 -0.87 6.46 -25.62 -0.17 -1.03 16 20 C 0.51 5.48 6.19 -10.99 -0.07 5.42 16 21 O -0.52 -7.41 14.54 5.56 0.08 -7.33 16 22 C 0.10 0.94 3.39 -68.21 -0.23 0.71 16 23 H 0.12 0.79 6.20 -51.93 -0.32 0.47 16 24 C 0.10 1.00 6.36 -3.17 -0.02 0.98 16 25 N -0.74 -8.22 6.37 -64.70 -0.41 -8.64 16 26 C 0.71 9.78 8.92 -88.40 -0.79 9.00 16 27 O -0.59 -10.49 18.05 5.29 0.10 -10.40 16 28 N -0.72 -7.88 5.67 -59.33 -0.34 -8.22 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.38 9.36 7.67 -40.82 -0.31 9.05 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.80 5.81 -51.93 -0.30 0.50 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 0.67 8.06 -51.93 -0.42 0.25 16 36 H 0.08 0.56 5.81 -51.93 -0.30 0.25 16 37 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 38 H 0.09 0.95 7.05 -51.93 -0.37 0.58 16 39 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 40 H 0.08 0.90 6.14 -51.93 -0.32 0.58 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.48 7.67 -51.93 -0.40 0.09 16 48 H 0.10 0.87 8.13 -51.93 -0.42 0.45 16 49 H 0.09 0.91 6.96 -51.93 -0.36 0.55 16 50 H 0.43 4.20 8.96 -40.82 -0.37 3.83 16 51 H 0.43 4.21 8.96 -40.82 -0.37 3.84 16 LS Contribution 400.85 15.07 6.04 6.04 Total: -1.00 -34.34 400.85 -10.53 -44.87 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -8.45 Total: 10.57 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -2.50 Total: 6.06 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: -0.77 Total: -66.25 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: 0.18 Total: -17.73 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.34 -10.53 -44.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177402888.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.845 kcal (2) G-P(sol) polarization free energy of solvation -34.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds