Wall clock time and date at job start Tue Mar 31 2020 22:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86794 * 120.00086 * 2 1 4 4 H 1.48500 * 109.47585 * 270.00123 * 3 2 1 5 5 H 1.48505 * 109.47358 * 30.00394 * 3 2 1 6 6 H 1.48506 * 109.47158 * 150.00143 * 3 2 1 7 7 C 1.38812 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99949 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99919 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99881 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47129 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47152 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47153 * 180.02562 * 12 11 10 14 14 C 1.46503 * 119.99725 * 269.99696 * 13 12 11 15 15 C 1.53005 * 109.47469 * 275.64727 * 14 13 12 16 16 C 1.54265 * 110.02993 * 291.56131 * 15 14 13 17 17 C 1.54891 * 104.19709 * 217.10192 * 16 15 14 18 18 C 1.54895 * 102.74297 * 37.93991 * 17 16 15 19 19 C 1.53871 * 110.03628 * 174.39390 * 15 14 13 20 20 C 1.34777 * 120.00541 * 89.99969 * 13 12 11 21 21 O 1.21279 * 120.00211 * 185.12876 * 20 13 12 22 22 C 1.50695 * 119.99665 * 5.12238 * 20 13 12 23 23 H 1.09001 * 110.60663 * 33.46730 * 22 20 13 24 24 C 1.54106 * 110.66164 * 270.75282 * 22 20 13 25 25 N 1.47049 * 103.86422 * 241.72949 * 24 22 20 26 26 C 1.33952 * 109.17932 * 359.74857 * 25 24 22 27 27 O 1.21583 * 123.04339 * 179.97438 * 26 25 24 28 28 N 1.33942 * 113.91222 * 0.02562 * 26 25 24 29 29 H 0.96994 * 119.99395 * 359.97438 * 1 2 3 30 30 H 0.96994 * 120.00047 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.46848 * 60.00364 * 10 9 7 32 32 H 1.09007 * 109.47090 * 300.00717 * 10 9 7 33 33 H 1.08999 * 109.47269 * 59.99757 * 11 10 9 34 34 H 1.08999 * 109.46922 * 299.99973 * 11 10 9 35 35 H 1.08999 * 109.47438 * 59.99608 * 12 11 10 36 36 H 1.08999 * 109.46979 * 299.99686 * 12 11 10 37 37 H 1.09000 * 109.47137 * 35.64298 * 14 13 12 38 38 H 1.08998 * 109.47081 * 155.64915 * 14 13 12 39 39 H 1.08998 * 110.01493 * 52.99713 * 15 14 13 40 40 H 1.09006 * 110.48953 * 335.78157 * 16 15 14 41 41 H 1.09003 * 110.49238 * 98.41994 * 16 15 14 42 42 H 1.09001 * 110.75400 * 279.62723 * 17 16 15 43 43 H 1.09000 * 110.91818 * 156.32613 * 17 16 15 44 44 H 1.08996 * 110.48018 * 203.37874 * 18 17 16 45 45 H 1.09002 * 110.59635 * 80.79783 * 18 17 16 46 46 H 1.08997 * 110.02622 * 238.57163 * 19 15 14 47 47 H 1.09000 * 110.02918 * 359.97438 * 19 15 14 48 48 H 1.09002 * 110.75882 * 123.03218 * 24 22 20 49 49 H 1.09003 * 110.46469 * 0.27944 * 24 22 20 50 50 H 0.97004 * 125.41469 * 179.75847 * 25 24 22 51 51 H 0.97007 * 125.40948 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 6 1.8287 -6.1447 -0.0005 13 7 0.8767 -7.2582 -0.0018 14 6 0.3994 -7.8152 1.2664 15 6 1.4041 -8.8485 1.7800 16 6 1.4054 -10.0869 0.8601 17 6 1.5942 -11.2801 1.8294 18 6 0.7501 -10.8591 3.0580 19 6 0.9874 -9.3396 3.1775 20 6 0.4400 -7.7703 -1.1695 21 8 -0.4171 -8.6283 -1.1726 22 6 1.0167 -7.2766 -2.4712 23 1 2.0676 -7.0138 -2.3501 24 6 0.2171 -6.0686 -2.9968 25 7 -0.3167 -6.5332 -4.2858 26 6 0.0910 -7.7905 -4.5034 27 8 -0.2072 -8.4211 -5.4993 28 7 0.8559 -8.2904 -3.5242 29 1 -0.4849 0.8400 0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 2.6846 -3.7146 0.8895 32 1 2.6848 -3.7146 -0.8905 33 1 0.4374 -4.7617 -0.8914 34 1 0.4368 -4.7621 0.8886 35 1 2.4548 -6.2025 0.8898 36 1 2.4560 -6.2026 -0.8901 37 1 0.2954 -7.0145 1.9986 38 1 -0.5675 -8.2941 1.1118 39 1 2.4016 -8.4112 1.8199 40 1 0.4554 -10.1710 0.3321 41 1 2.2328 -10.0356 0.1524 42 1 2.6434 -11.3938 2.1022 43 1 1.2081 -12.2011 1.3928 44 1 1.0994 -11.3714 3.9544 45 1 -0.3061 -11.0681 2.8874 46 1 1.7832 -9.1412 3.8954 47 1 0.0697 -8.8414 3.4900 48 1 0.8690 -5.2069 -3.1408 49 1 -0.5951 -5.8225 -2.3128 50 1 -0.8751 -6.0120 -4.8837 51 1 1.2396 -9.1813 -3.5099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177402888.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:40 Heat of formation + Delta-G solvation = -76.996538 kcal Electronic energy + Delta-G solvation = -30582.310595 eV Core-core repulsion = 26515.613745 eV Total energy + Delta-G solvation = -4066.696849 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.49724 -40.81699 -38.92043 -37.62500 -37.36492 -36.24118 -34.08283 -33.85103 -32.01301 -30.87818 -29.87660 -29.44489 -26.95679 -26.20158 -24.62094 -24.14431 -22.87846 -22.45664 -21.53359 -20.77649 -20.11830 -19.09511 -18.99199 -18.67159 -17.58036 -17.32219 -16.67708 -16.51486 -16.39275 -16.26512 -15.90774 -15.69991 -15.27065 -15.18826 -15.06043 -15.03930 -14.67718 -14.28976 -14.17775 -13.91053 -13.56544 -13.49339 -13.14373 -13.00115 -12.73979 -12.71255 -12.33790 -12.09062 -11.96539 -11.93457 -11.87514 -11.83316 -11.79633 -11.70395 -11.53825 -11.51411 -11.26430 -11.23461 -10.85306 -10.54666 -9.86511 -9.63469 -8.90977 -7.89816 -5.16838 1.32018 1.52533 1.52576 1.60793 1.65260 1.91529 2.10264 2.61236 2.94752 3.25406 3.28635 3.45540 3.72527 3.76254 3.80212 3.83535 4.00477 4.08715 4.22473 4.32272 4.42496 4.47981 4.56967 4.58517 4.60619 4.62855 4.67925 4.69778 4.73839 4.82931 4.86173 4.91713 4.95307 5.04770 5.08853 5.10424 5.26692 5.32167 5.40666 5.48593 5.49883 5.52028 5.58726 5.64261 5.87088 6.15269 6.22501 6.33070 6.34973 7.05839 7.40339 7.48219 8.19891 8.38559 9.33708 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008667 B = 0.003201 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.996618 B = 8745.382033 C =11475.632599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.966 3.034 4 H -0.289 1.289 5 H -0.301 1.301 6 H -0.268 1.268 7 C -0.237 4.237 8 H 0.079 0.921 9 N -0.749 5.749 10 C 0.152 3.848 11 C -0.135 4.135 12 C 0.110 3.890 13 N -0.593 5.593 14 C 0.117 3.883 15 C -0.100 4.100 16 C -0.118 4.118 17 C -0.124 4.124 18 C -0.125 4.125 19 C -0.117 4.117 20 C 0.507 3.493 21 O -0.561 6.561 22 C 0.104 3.896 23 H 0.154 0.846 24 C 0.102 3.898 25 N -0.730 5.730 26 C 0.699 3.301 27 O -0.636 6.636 28 N -0.709 5.709 29 H 0.249 0.751 30 H 0.372 0.628 31 H 0.025 0.975 32 H 0.036 0.964 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.056 0.944 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.124 0.876 49 H 0.083 0.917 50 H 0.438 0.562 51 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.682 -20.059 3.803 21.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.796 3.204 4 H -0.216 1.216 5 H -0.228 1.228 6 H -0.193 1.193 7 C -0.369 4.369 8 H 0.097 0.903 9 N -0.391 5.391 10 C 0.025 3.975 11 C -0.174 4.174 12 C -0.013 4.013 13 N -0.324 5.324 14 C -0.005 4.005 15 C -0.119 4.119 16 C -0.156 4.156 17 C -0.161 4.161 18 C -0.162 4.162 19 C -0.156 4.156 20 C 0.293 3.707 21 O -0.438 6.438 22 C -0.005 4.005 23 H 0.171 0.829 24 C -0.023 4.023 25 N -0.393 5.393 26 C 0.397 3.603 27 O -0.518 6.518 28 N -0.370 5.370 29 H 0.057 0.943 30 H 0.204 0.796 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.074 0.926 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.142 0.858 49 H 0.101 0.899 50 H 0.282 0.718 51 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 6.266 -20.711 3.355 21.897 hybrid contribution -0.563 1.056 -0.128 1.203 sum 5.704 -19.656 3.227 20.719 Atomic orbital electron populations 1.69801 1.06550 1.25817 1.59979 1.25487 0.96258 1.00919 1.04234 0.85247 0.77836 0.80025 0.77317 1.21628 1.22832 1.19295 1.19641 0.91599 0.85333 1.40306 0.90287 1.42611 1.05672 1.01428 1.89417 1.20773 0.93935 0.84110 0.98632 1.22090 0.98823 0.93937 1.02556 1.21809 0.90558 0.82771 1.06128 1.47958 1.45236 1.33901 1.05291 1.21739 0.97572 0.96872 0.84317 1.22126 0.99636 0.95139 0.95001 1.22420 1.01110 0.94629 0.97435 1.22489 1.00369 0.97497 0.95787 1.22350 0.99671 0.95908 0.98315 1.22140 1.01889 0.95615 0.95909 1.20927 0.81915 0.81884 0.85964 1.90719 1.32138 1.33616 1.87376 1.22171 1.03779 0.88376 0.86184 0.82901 1.22528 0.98815 0.96181 0.84801 1.45088 1.56176 1.14215 1.23800 1.16098 0.78745 0.82544 0.82894 1.90946 1.64781 1.64093 1.32003 1.44787 1.54963 1.18096 1.19187 0.94262 0.79617 0.95714 0.94573 0.91572 0.92581 0.87728 0.87349 0.89404 0.91514 0.89579 0.92798 0.92421 0.90848 0.92225 0.90839 0.92554 0.90520 0.91596 0.85835 0.89883 0.71844 0.72094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.65 13.06 21.65 0.28 -56.37 16 2 C -0.08 -4.16 5.50 84.86 0.47 -3.69 16 3 Si 0.97 43.74 29.55 68.60 2.03 45.77 16 4 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.24 -12.06 9.99 84.03 0.84 -11.22 16 8 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 9 N -0.75 -33.25 5.60 -343.43 -1.92 -35.18 16 10 C 0.15 4.53 6.26 86.38 0.54 5.07 16 11 C -0.14 -2.87 5.65 30.59 0.17 -2.70 16 12 C 0.11 1.44 5.32 86.38 0.46 1.90 16 13 N -0.59 -9.53 2.39 -821.81 -1.96 -11.49 16 14 C 0.12 1.96 4.65 86.38 0.40 2.36 16 15 C -0.10 -1.39 3.14 -10.07 -0.03 -1.43 16 16 C -0.12 -1.96 5.66 31.67 0.18 -1.78 16 17 C -0.12 -1.76 6.91 31.89 0.22 -1.54 16 18 C -0.12 -1.68 6.83 31.67 0.22 -1.46 16 19 C -0.12 -1.51 6.46 31.31 0.20 -1.30 16 20 C 0.51 10.14 6.19 87.66 0.54 10.68 16 21 O -0.56 -15.83 14.54 -3.03 -0.04 -15.88 16 22 C 0.10 1.68 3.39 44.51 0.15 1.83 16 23 H 0.15 1.37 6.20 -2.39 -0.01 1.35 16 24 C 0.10 1.75 6.36 86.65 0.55 2.30 16 25 N -0.73 -15.69 6.37 -477.34 -3.04 -18.73 16 26 C 0.70 19.07 8.92 179.57 1.60 20.67 16 27 O -0.64 -23.11 18.05 -3.98 -0.07 -23.18 16 28 N -0.71 -14.77 5.67 -460.36 -2.61 -17.38 16 29 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 30 H 0.37 18.02 7.67 -92.71 -0.71 17.31 16 31 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.07 1.43 5.81 -2.39 -0.01 1.41 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.10 1.11 8.06 -2.39 -0.02 1.09 16 36 H 0.11 0.89 5.81 -2.39 -0.01 0.88 16 37 H 0.09 1.33 8.11 -2.39 -0.02 1.31 16 38 H 0.07 1.43 7.05 -2.39 -0.02 1.42 16 39 H 0.09 1.04 8.13 -2.39 -0.02 1.02 16 40 H 0.05 1.21 6.14 -2.38 -0.01 1.19 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.07 0.86 7.67 -2.39 -0.02 0.84 16 48 H 0.12 1.68 8.13 -2.39 -0.02 1.66 16 49 H 0.08 1.57 6.96 -2.39 -0.02 1.55 16 50 H 0.44 8.30 8.96 -92.71 -0.83 7.47 16 51 H 0.44 8.12 8.96 -92.70 -0.83 7.29 16 Total: -1.00 -75.48 400.85 -2.24 -77.72 By element: Atomic # 1 Polarization: 36.43 SS G_CDS: -1.41 Total: 35.03 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: 6.51 Total: 19.69 kcal Atomic # 7 Polarization: -129.89 SS G_CDS: -9.26 Total: -139.14 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -0.12 Total: -39.05 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -75.48 -2.24 -77.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177402888.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.722 kcal (2) G-P(sol) polarization free energy of solvation -75.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds