Wall clock time and date at job start Tue Mar 31 2020 20:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47375 * 2 1 4 4 C 1.34638 * 117.00226 * 180.02562 * 3 2 1 5 5 O 1.21507 * 120.00189 * 359.97438 * 4 3 2 6 6 N 1.34784 * 119.99962 * 179.97438 * 4 3 2 7 7 C 1.46927 * 120.62995 * 359.71715 * 6 4 3 8 8 C 1.52758 * 109.00682 * 233.58186 * 7 6 4 9 9 C 1.53039 * 109.38439 * 305.58958 * 8 7 6 10 10 C 1.50707 * 109.45882 * 181.26027 * 9 8 7 11 11 O 1.21281 * 119.99625 * 239.93348 * 10 9 8 12 12 N 1.34775 * 119.99880 * 59.93449 * 10 9 8 13 13 C 1.46493 * 119.99808 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.41929 * 324.85762 * 13 12 10 15 15 C 1.52964 * 109.41445 * 84.64577 * 13 12 10 16 16 C 1.53226 * 109.40549 * 183.70058 * 15 13 12 17 17 C 1.51264 * 108.54120 * 305.37294 * 16 15 13 18 18 C 1.37874 * 120.85428 * 231.32407 * 17 16 15 19 19 N 1.31515 * 120.00040 * 180.02562 * 18 17 16 20 20 Si 1.86802 * 119.99839 * 0.02562 * 18 17 16 21 21 H 1.48503 * 109.47148 * 89.99776 * 20 18 17 22 22 H 1.48497 * 109.47109 * 209.99862 * 20 18 17 23 23 H 1.48497 * 109.47045 * 330.00077 * 20 18 17 24 24 C 1.51280 * 118.29670 * 51.34711 * 17 16 15 25 25 C 1.52961 * 109.41193 * 204.99660 * 13 12 10 26 26 C 1.53041 * 109.53647 * 61.24252 * 9 8 7 27 27 C 1.46923 * 120.62964 * 179.97438 * 6 4 3 28 28 H 1.08997 * 109.47145 * 59.99526 * 1 2 3 29 29 H 1.08999 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46544 * 299.99685 * 1 2 3 31 31 H 1.08998 * 109.46694 * 240.00041 * 2 1 3 32 32 H 1.08994 * 109.47422 * 120.00032 * 2 1 3 33 33 H 1.09003 * 109.58790 * 353.42296 * 7 6 4 34 34 H 1.09007 * 109.58432 * 113.84106 * 7 6 4 35 35 H 1.08998 * 109.56153 * 185.55612 * 8 7 6 36 36 H 1.09003 * 109.38437 * 65.51806 * 8 7 6 37 37 H 1.09004 * 109.44954 * 301.22556 * 9 8 7 38 38 H 0.97001 * 120.00218 * 359.97438 * 12 10 9 39 39 H 1.09003 * 109.48151 * 303.68470 * 15 13 12 40 40 H 1.09005 * 109.48378 * 63.72458 * 15 13 12 41 41 H 1.09002 * 109.62843 * 185.65442 * 16 15 13 42 42 H 1.09001 * 109.62479 * 65.09255 * 16 15 13 43 43 H 0.97005 * 119.99761 * 179.97438 * 19 18 17 44 44 H 1.08999 * 109.62186 * 188.94025 * 24 17 16 45 45 H 1.08999 * 109.78557 * 68.46306 * 24 17 16 46 46 H 1.08995 * 109.48662 * 296.27432 * 25 13 12 47 47 H 1.08997 * 109.47913 * 56.30592 * 25 13 12 48 48 H 1.08996 * 109.49638 * 178.68503 * 26 9 8 49 49 H 1.08997 * 109.50160 * 58.58619 * 26 9 8 50 50 H 1.08998 * 109.59009 * 246.15627 * 27 6 4 51 51 H 1.09003 * 109.58381 * 6.44334 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3488 1.5453 -0.0005 5 8 4.0890 0.5817 -0.0005 6 7 3.8640 2.7908 -0.0011 7 6 2.9819 3.9658 -0.0074 8 6 3.3737 4.8759 -1.1699 9 6 4.8643 5.2091 -1.0741 10 6 5.2461 6.1319 -2.2028 11 8 6.0903 5.7923 -3.0045 12 7 4.6493 7.3345 -2.3211 13 6 5.0208 8.2318 -3.4179 14 1 6.0853 8.1266 -3.6274 15 6 4.2194 7.8654 -4.6682 16 6 4.6740 8.7425 -5.8394 17 6 4.5575 10.1933 -5.4275 18 6 3.8871 11.1014 -6.2191 19 7 3.7964 12.3590 -5.8450 20 14 3.1076 10.5457 -7.8232 21 1 1.7105 10.1107 -7.5701 22 1 3.1077 11.6727 -8.7901 23 1 3.8850 9.4118 -8.3845 24 6 5.1958 10.6223 -4.1248 25 6 4.7221 9.6771 -3.0157 26 6 5.6840 3.9202 -1.1699 27 6 5.3184 2.9993 -0.0011 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.9471 3.6452 -0.1286 34 1 3.0905 4.5093 0.9313 35 1 2.7916 5.7963 -1.1251 36 1 3.1749 4.3652 -2.1122 37 1 5.0664 5.6980 -0.1211 38 1 3.9738 7.6060 -1.6800 39 1 4.3870 6.8165 -4.9129 40 1 3.1582 8.0301 -4.4812 41 1 4.0386 8.5555 -6.7051 42 1 5.7107 8.5143 -6.0869 43 1 3.3250 12.9980 -6.4022 44 1 4.8954 11.6432 -3.8888 45 1 6.2811 10.5707 -4.2112 46 1 3.6492 9.7990 -2.8677 47 1 5.2459 9.9121 -2.0892 48 1 6.7462 4.1605 -1.1250 49 1 5.4636 3.4180 -2.1118 50 1 5.6212 3.4625 0.9379 51 1 5.8248 2.0410 -0.1159 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180831287.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:40 Heat of formation + Delta-G solvation = -164.118136 kcal Electronic energy + Delta-G solvation = -30083.142572 eV Core-core repulsion = 25980.375095 eV Total energy + Delta-G solvation = -4102.767477 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.84898 -41.05893 -39.18415 -38.27053 -37.38539 -35.38298 -34.32306 -33.31988 -32.47818 -31.99528 -31.47143 -29.22770 -27.15981 -24.78477 -24.09184 -23.91716 -23.32724 -22.78670 -21.42591 -21.25250 -20.63970 -19.24912 -18.41575 -18.04847 -17.73763 -17.59261 -17.03550 -16.41872 -16.04712 -15.93065 -15.65829 -15.38521 -15.09589 -14.88430 -14.72607 -14.51935 -14.36819 -14.16754 -14.00640 -13.89125 -13.62336 -13.43126 -13.36534 -12.97102 -12.84631 -12.77062 -12.69284 -12.54681 -12.51035 -12.30880 -11.91360 -11.90301 -11.81086 -11.68586 -11.54130 -11.51272 -11.49812 -11.03013 -10.73091 -10.58744 -10.51630 -9.86492 -9.82867 -8.17882 -6.11536 1.08129 1.36480 1.41348 1.49360 1.66023 1.73637 2.29624 2.40275 2.83931 3.10575 3.58519 3.72009 3.77689 4.01067 4.02956 4.05391 4.10417 4.21953 4.24741 4.31173 4.35874 4.39808 4.51025 4.66355 4.67497 4.69941 4.72174 4.80229 4.83035 4.86788 4.94130 4.96806 4.97827 5.08187 5.11676 5.14735 5.18808 5.23214 5.25193 5.30002 5.39340 5.44181 5.54953 5.60434 5.72295 5.76560 5.83692 6.21587 6.35016 6.72281 6.94069 7.15246 7.39946 7.46716 8.92558 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017713 B = 0.002265 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.407319 B =12356.448113 C =13154.627721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.074 3.926 3 O -0.369 6.369 4 C 0.644 3.356 5 O -0.612 6.612 6 N -0.592 5.592 7 C 0.116 3.884 8 C -0.123 4.123 9 C -0.096 4.096 10 C 0.510 3.490 11 O -0.590 6.590 12 N -0.710 5.710 13 C 0.166 3.834 14 H 0.051 0.949 15 C -0.104 4.104 16 C -0.017 4.017 17 C -0.498 4.498 18 C 0.026 3.974 19 N -0.926 5.926 20 Si 0.937 3.063 21 H -0.269 1.269 22 H -0.291 1.291 23 H -0.263 1.263 24 C 0.007 3.993 25 C -0.099 4.099 26 C -0.109 4.109 27 C 0.132 3.868 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.051 0.949 37 H 0.137 0.863 38 H 0.414 0.586 39 H 0.035 0.965 40 H 0.058 0.942 41 H 0.030 0.970 42 H 0.008 0.992 43 H 0.264 0.736 44 H 0.034 0.966 45 H -0.006 1.006 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.085 0.915 49 H 0.045 0.955 50 H 0.106 0.894 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.309 -19.678 18.066 27.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.000 4.000 3 O -0.283 6.283 4 C 0.399 3.601 5 O -0.504 6.504 6 N -0.332 5.332 7 C -0.006 4.006 8 C -0.161 4.161 9 C -0.117 4.117 10 C 0.298 3.702 11 O -0.471 6.471 12 N -0.361 5.361 13 C 0.061 3.939 14 H 0.069 0.931 15 C -0.143 4.143 16 C -0.055 4.055 17 C -0.517 4.517 18 C -0.172 4.172 19 N -0.566 5.566 20 Si 0.763 3.237 21 H -0.195 1.195 22 H -0.218 1.218 23 H -0.188 1.188 24 C -0.031 4.031 25 C -0.137 4.137 26 C -0.148 4.148 27 C 0.011 3.989 28 H 0.085 0.915 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.070 0.930 37 H 0.154 0.846 38 H 0.250 0.750 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.026 0.974 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.013 0.987 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.104 0.896 49 H 0.064 0.936 50 H 0.124 0.876 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.644 -20.076 17.463 27.425 hybrid contribution -0.288 0.185 -1.263 1.309 sum -6.932 -19.891 16.200 26.573 Atomic orbital electron populations 1.21836 0.90145 1.04462 1.03768 1.23203 0.96596 0.77829 1.02417 1.86239 1.21032 1.34378 1.86664 1.18251 0.81504 0.84294 0.76033 1.90956 1.60712 1.40745 1.57988 1.47152 1.08128 1.03094 1.74869 1.21855 0.94314 0.84799 0.99583 1.21871 0.93497 1.01586 0.99166 1.21362 0.97351 0.94801 0.98201 1.21265 0.80359 0.82166 0.86436 1.90692 1.35037 1.75596 1.45746 1.46119 1.42607 1.16875 1.30500 1.20576 0.97881 0.89225 0.86186 0.93078 1.21763 0.99547 0.97026 0.95989 1.19729 0.96237 0.94633 0.94914 1.20560 1.32743 0.92742 1.05667 1.25527 0.96707 0.94737 1.00267 1.69946 1.43815 1.03438 1.39396 0.85866 0.79430 0.77707 0.80661 1.19461 1.21801 1.18755 1.19312 0.94179 0.96289 0.93333 1.21676 1.00966 0.92934 0.98141 1.21678 1.00759 0.94236 0.98125 1.21743 0.77106 1.00633 0.99394 0.91511 0.88049 0.90891 0.92004 0.91218 0.88107 0.87486 0.87241 0.92978 0.84577 0.74956 0.94613 0.92287 0.95129 0.97353 0.92720 0.94701 0.98710 0.92145 0.92052 0.89644 0.93564 0.87590 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.29 71.98 0.74 -0.47 16 2 C 0.07 1.09 6.19 71.98 0.45 1.53 16 3 O -0.37 -6.97 8.86 -55.47 -0.49 -7.47 16 4 C 0.64 14.60 8.43 129.79 1.09 15.70 16 5 O -0.61 -17.90 15.54 19.82 0.31 -17.60 16 6 N -0.59 -10.25 2.98 -950.00 -2.83 -13.08 16 7 C 0.12 1.27 6.42 86.22 0.55 1.83 16 8 C -0.12 -1.65 5.25 30.53 0.16 -1.49 16 9 C -0.10 -1.60 2.49 -11.51 -0.03 -1.63 16 10 C 0.51 13.87 7.11 87.66 0.62 14.49 16 11 O -0.59 -22.32 15.64 -3.03 -0.05 -22.37 16 12 N -0.71 -18.65 4.96 -442.66 -2.20 -20.84 16 13 C 0.17 6.02 2.35 44.97 0.11 6.13 16 14 H 0.05 2.16 7.58 -2.39 -0.02 2.14 16 15 C -0.10 -4.17 5.50 30.66 0.17 -4.00 16 16 C -0.02 -0.80 5.59 30.10 0.17 -0.63 16 17 C -0.50 -25.89 5.51 -16.17 -0.09 -25.98 16 18 C 0.03 1.42 5.46 84.65 0.46 1.88 16 19 N -0.93 -53.11 12.73 21.45 0.27 -52.84 16 20 Si 0.94 43.10 27.27 68.60 1.87 44.97 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 22 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 23 H -0.26 -11.79 6.46 99.48 0.64 -11.14 16 24 C 0.01 0.33 5.97 30.11 0.18 0.51 16 25 C -0.10 -3.71 5.40 30.66 0.17 -3.55 16 26 C -0.11 -2.11 4.65 30.68 0.14 -1.97 16 27 C 0.13 2.12 6.44 86.38 0.56 2.68 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 33 H 0.10 1.08 6.93 -2.39 -0.02 1.06 16 34 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.11 1.00 7.52 -2.39 -0.02 0.99 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.41 7.65 8.00 -92.71 -0.74 6.91 16 39 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 41 H 0.03 1.41 4.78 -2.39 -0.01 1.40 16 42 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 44 H 0.03 1.85 7.07 -2.39 -0.02 1.84 16 45 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 46 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.09 1.71 8.07 -2.39 -0.02 1.69 16 49 H 0.05 1.17 8.13 -2.39 -0.02 1.15 16 50 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.08 1.65 7.00 -2.39 -0.02 1.63 16 Total: -1.00 -73.88 397.23 2.46 -71.42 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.12 Total: 12.74 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 5.45 Total: 5.06 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -4.75 Total: -86.76 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -0.23 Total: -47.43 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.87 Total: 44.97 kcal Total: -73.88 2.46 -71.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180831287.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.696 kcal (2) G-P(sol) polarization free energy of solvation -73.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds