Wall clock time and date at job start Tue Mar 31 2020 22:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00076 * 2 1 4 4 H 1.48502 * 109.46824 * 90.00533 * 3 2 1 5 5 H 1.48491 * 109.46943 * 330.00297 * 3 2 1 6 6 H 1.48495 * 109.46967 * 210.00214 * 3 2 1 7 7 C 1.38811 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99794 * 204.67021 * 7 2 1 9 9 N 1.36938 * 119.99860 * 24.65706 * 7 2 1 10 10 C 1.43463 * 118.93758 * 216.27157 * 9 7 2 11 11 C 1.53238 * 108.26691 * 273.78551 * 10 9 7 12 12 C 1.47142 * 111.81190 * 281.68003 * 11 10 9 13 13 N 1.48210 * 110.34416 * 58.22571 * 12 11 10 14 14 C 1.34787 * 119.97227 * 102.46340 * 13 12 11 15 15 O 1.21280 * 119.99775 * 350.86602 * 14 13 12 16 16 C 1.50699 * 120.00120 * 170.86557 * 14 13 12 17 17 N 1.46501 * 109.46827 * 323.95320 * 16 14 13 18 18 C 1.34772 * 120.00168 * 302.56858 * 17 16 14 19 19 N 1.34782 * 120.00216 * 184.85577 * 18 17 16 20 20 O 1.21586 * 120.00005 * 4.84946 * 18 17 16 21 21 C 1.52989 * 109.46970 * 203.95372 * 16 14 13 22 22 C 1.53009 * 109.47176 * 180.02562 * 21 16 14 23 23 C 1.52992 * 109.46952 * 59.99782 * 22 21 16 24 24 C 1.53001 * 109.47231 * 300.00328 * 23 22 21 25 25 C 1.52998 * 109.46877 * 83.94966 * 16 14 13 26 26 C 1.43621 * 120.05812 * 282.48621 * 13 12 11 27 27 C 1.48857 * 118.94139 * 36.54980 * 9 7 2 28 28 H 0.97002 * 120.00216 * 182.04604 * 1 2 3 29 29 H 1.09000 * 109.76416 * 33.25481 * 10 9 7 30 30 H 1.09000 * 109.75860 * 154.01892 * 10 9 7 31 31 H 1.09000 * 109.07838 * 161.04542 * 11 10 9 32 32 H 1.08995 * 108.90646 * 42.19724 * 11 10 9 33 33 H 1.09004 * 109.32726 * 297.96351 * 12 11 10 34 34 H 1.08997 * 109.32666 * 178.49336 * 12 11 10 35 35 H 0.97005 * 119.99923 * 122.57105 * 17 16 14 36 36 H 0.97004 * 119.99342 * 5.11552 * 19 18 17 37 37 H 0.96992 * 119.99936 * 185.12083 * 19 18 17 38 38 H 1.09004 * 109.47278 * 299.99922 * 21 16 14 39 39 H 1.09000 * 109.47612 * 59.99893 * 21 16 14 40 40 H 1.09004 * 109.46876 * 300.00074 * 22 21 16 41 41 H 1.08994 * 109.46923 * 179.97438 * 22 21 16 42 42 H 1.08998 * 109.47241 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.47480 * 60.00084 * 23 22 21 44 44 H 1.09005 * 109.46956 * 299.99548 * 24 23 22 45 45 H 1.09011 * 109.47033 * 180.02562 * 24 23 22 46 46 H 1.08998 * 109.47340 * 300.00084 * 25 16 14 47 47 H 1.09004 * 109.46899 * 60.00368 * 25 16 14 48 48 H 1.08997 * 108.87478 * 329.88498 * 26 13 12 49 49 H 1.08996 * 108.79619 * 211.39244 * 26 13 12 50 50 H 1.09004 * 109.47571 * 260.60148 * 27 9 7 51 51 H 1.09006 * 109.47749 * 20.62489 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 1.4477 2.6526 -0.6999 6 1 3.5477 1.4401 -0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0163 -1.2450 0.3898 9 7 1.4191 -2.3338 -0.4958 10 6 1.6878 -3.5919 0.1390 11 6 2.9680 -4.1736 -0.4700 12 6 2.7188 -4.7860 -1.7845 13 7 2.1445 -3.7878 -2.7175 14 6 2.9244 -3.2177 -3.6574 15 8 4.1243 -3.3925 -3.6372 16 6 2.3053 -2.3633 -4.7334 17 7 1.0060 -2.9228 -5.1141 18 6 0.9233 -4.1922 -5.5594 19 7 -0.2544 -4.6758 -6.0018 20 8 1.9111 -4.9010 -5.5622 21 6 3.2261 -2.3350 -5.9549 22 6 2.5979 -1.4669 -7.0471 23 6 2.4061 -0.0436 -6.5199 24 6 1.4853 -0.0719 -5.2983 25 6 2.1130 -0.9398 -4.2065 26 6 0.7577 -3.4270 -2.6205 27 6 0.5235 -2.2197 -1.6793 28 1 -0.4850 -0.8395 0.0300 29 1 1.8298 -3.4419 1.2093 30 1 0.8558 -4.2754 -0.0308 31 1 3.3711 -4.9300 0.2033 32 1 3.6998 -3.3739 -0.5840 33 1 2.0210 -5.6155 -1.6696 34 1 3.6577 -5.1615 -2.1914 35 1 0.2052 -2.3797 -5.0456 36 1 -1.0246 -4.0899 -6.0695 37 1 -0.3319 -5.6096 -6.2523 38 1 4.1928 -1.9187 -5.6716 39 1 3.3631 -3.3491 -6.3302 40 1 1.6309 -1.8828 -7.3305 41 1 3.2541 -1.4464 -7.9172 42 1 1.9581 0.5747 -7.2978 43 1 3.3729 0.3723 -6.2365 44 1 0.5183 -0.4877 -5.5818 45 1 1.3483 0.9424 -4.9230 46 1 1.4570 -0.9600 -3.3363 47 1 3.0797 -0.5235 -3.9233 48 1 0.1964 -4.2820 -2.2437 49 1 0.3900 -3.1751 -3.6152 50 1 -0.5154 -2.2119 -1.3495 51 1 0.7425 -1.2948 -2.2130 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197339315.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:49 Heat of formation + Delta-G solvation = -15.730937 kcal Electronic energy + Delta-G solvation = -34152.958701 eV Core-core repulsion = 30088.918528 eV Total energy + Delta-G solvation = -4064.040174 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.45595 -38.95449 -37.87867 -36.81541 -34.59347 -34.00783 -33.52117 -32.28730 -30.90428 -30.58894 -29.60414 -27.53178 -25.46533 -23.63093 -23.48987 -22.69833 -22.04495 -21.28111 -19.76447 -19.40611 -18.80936 -18.42846 -17.45903 -17.03437 -16.33863 -16.12290 -15.30057 -15.09270 -14.83238 -14.58391 -14.48708 -14.06636 -13.94774 -13.71113 -13.62816 -13.36328 -12.96954 -12.73768 -12.57354 -12.32231 -12.18799 -12.17591 -11.96858 -11.72786 -11.23889 -11.15326 -11.03090 -10.74474 -10.69249 -10.57913 -10.50952 -10.26217 -10.18310 -10.12823 -10.05717 -9.74254 -9.61938 -9.47568 -9.30381 -8.48865 -8.27205 -7.84835 -6.75972 -6.06506 -3.33028 2.68379 3.14267 3.33822 3.46717 3.49620 3.58849 3.65964 4.37281 4.56453 4.71276 4.79884 4.82119 5.12223 5.21044 5.22688 5.29368 5.45737 5.46788 5.54510 5.57478 5.61576 5.71928 5.78523 5.80784 5.96024 5.98900 6.05430 6.08926 6.13583 6.15986 6.24411 6.25730 6.27777 6.32126 6.42111 6.46387 6.53537 6.56121 6.64788 6.73172 6.81346 6.85573 7.04922 7.08927 7.31007 7.84655 8.09835 8.17604 8.57600 8.60238 8.79787 9.18767 9.84340 10.29292 11.17194 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011275 B = 0.006182 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.786527 B = 4528.217196 C = 5687.663532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.015 4.015 3 Si 1.057 2.943 4 H -0.293 1.293 5 H -0.286 1.286 6 H -0.291 1.291 7 C -0.352 4.352 8 H 0.046 0.954 9 N -0.590 5.590 10 C 0.166 3.834 11 C -0.166 4.166 12 C 0.133 3.867 13 N -0.571 5.571 14 C 0.536 3.464 15 O -0.548 6.548 16 C 0.190 3.810 17 N -0.723 5.723 18 C 0.703 3.297 19 N -0.869 5.869 20 O -0.574 6.574 21 C -0.114 4.114 22 C -0.112 4.112 23 C -0.122 4.122 24 C -0.114 4.114 25 C -0.142 4.142 26 C 0.046 3.954 27 C 0.130 3.870 28 H 0.268 0.732 29 H 0.046 0.954 30 H 0.027 0.973 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.401 0.599 36 H 0.396 0.604 37 H 0.413 0.587 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.073 0.927 46 H 0.105 0.895 47 H 0.087 0.913 48 H 0.051 0.949 49 H 0.106 0.894 50 H 0.029 0.971 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.680 -4.717 -13.850 15.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.218 4.218 3 Si 0.887 3.113 4 H -0.221 1.221 5 H -0.211 1.211 6 H -0.217 1.217 7 C -0.482 4.482 8 H 0.064 0.936 9 N -0.312 5.312 10 C 0.038 3.962 11 C -0.207 4.207 12 C 0.012 3.988 13 N -0.301 5.301 14 C 0.323 3.677 15 O -0.425 6.425 16 C 0.100 3.900 17 N -0.384 5.384 18 C 0.402 3.598 19 N -0.437 5.437 20 O -0.450 6.450 21 C -0.153 4.153 22 C -0.150 4.150 23 C -0.159 4.159 24 C -0.152 4.152 25 C -0.179 4.179 26 C -0.081 4.081 27 C 0.005 3.995 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.239 0.761 36 H 0.223 0.777 37 H 0.245 0.755 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.091 0.909 46 H 0.123 0.877 47 H 0.106 0.894 48 H 0.070 0.930 49 H 0.122 0.878 50 H 0.047 0.953 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.274 -3.641 -13.805 14.457 hybrid contribution -0.705 -1.584 0.230 1.749 sum -2.979 -5.225 -13.575 14.848 Atomic orbital electron populations 1.70790 1.06530 1.30101 1.47648 1.25854 0.96471 1.01441 0.98048 0.83646 0.74979 0.75954 0.76706 1.22061 1.21139 1.21703 1.19821 0.97403 0.88569 1.42377 0.93585 1.43560 1.55429 1.03328 1.28912 1.20184 0.92885 0.87697 0.95452 1.21729 1.02453 1.00535 0.96032 1.20477 0.98627 0.89740 0.89999 1.47033 1.10043 1.41284 1.31735 1.20206 0.86631 0.79252 0.81661 1.90612 1.14723 1.61208 1.75989 1.20355 0.82308 0.93517 0.93800 1.45632 1.10422 1.13282 1.69089 1.15941 0.83940 0.82002 0.77935 1.42995 1.11752 1.15423 1.73578 1.91011 1.35233 1.57858 1.60907 1.21728 0.98288 1.01790 0.93456 1.21483 1.00685 0.95159 0.97668 1.21592 1.00250 0.96666 0.97395 1.21499 0.98277 1.00360 0.95067 1.22273 1.04773 0.90942 0.99948 1.22965 0.82369 0.99136 1.03596 1.22409 0.93726 0.95696 0.87691 0.92102 0.93597 0.95487 0.92908 0.91236 0.92712 0.90879 0.76087 0.77657 0.75461 0.90098 0.90088 0.92306 0.92015 0.92108 0.91679 0.92273 0.90878 0.87713 0.89428 0.93025 0.87761 0.95295 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.64 13.05 55.49 0.72 -24.91 16 2 C -0.01 -0.40 4.70 -17.43 -0.08 -0.48 16 3 Si 1.06 24.69 29.99 -169.99 -5.10 19.59 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.35 -9.50 9.01 -15.06 -0.14 -9.64 16 8 H 0.05 1.32 7.94 -52.49 -0.42 0.91 16 9 N -0.59 -13.97 2.26 -172.35 -0.39 -14.36 16 10 C 0.17 3.52 5.59 -5.53 -0.03 3.49 16 11 C -0.17 -3.29 5.63 -29.42 -0.17 -3.46 16 12 C 0.13 2.53 5.64 -5.91 -0.03 2.50 16 13 N -0.57 -10.89 2.34 -176.66 -0.41 -11.30 16 14 C 0.54 10.76 4.91 -10.98 -0.05 10.70 16 15 O -0.55 -12.89 15.60 5.56 0.09 -12.81 16 16 C 0.19 2.96 0.25 -132.98 -0.03 2.93 16 17 N -0.72 -8.87 1.64 -53.51 -0.09 -8.96 16 18 C 0.70 9.21 7.12 -86.92 -0.62 8.59 16 19 N -0.87 -7.09 8.88 27.63 0.25 -6.84 16 20 O -0.57 -10.30 14.51 5.29 0.08 -10.22 16 21 C -0.11 -1.72 4.08 -26.73 -0.11 -1.82 16 22 C -0.11 -1.28 5.77 -26.73 -0.15 -1.44 16 23 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 24 C -0.11 -1.35 5.75 -26.76 -0.15 -1.50 16 25 C -0.14 -2.20 4.69 -26.76 -0.13 -2.33 16 26 C 0.05 0.79 4.38 -4.58 -0.02 0.77 16 27 C 0.13 2.71 4.96 -1.75 -0.01 2.70 16 28 H 0.27 7.59 6.50 -40.82 -0.27 7.32 16 29 H 0.05 1.02 8.02 -51.93 -0.42 0.60 16 30 H 0.03 0.53 7.58 -51.93 -0.39 0.14 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.62 7.90 -51.93 -0.41 1.21 16 33 H 0.05 0.93 8.06 -51.93 -0.42 0.51 16 34 H 0.07 1.46 7.25 -51.93 -0.38 1.09 16 35 H 0.40 3.89 6.50 -40.82 -0.27 3.63 16 36 H 0.40 1.98 8.86 -40.82 -0.36 1.62 16 37 H 0.41 3.01 8.93 -40.82 -0.36 2.64 16 38 H 0.08 1.32 7.87 -51.93 -0.41 0.91 16 39 H 0.08 1.40 6.53 -51.93 -0.34 1.06 16 40 H 0.06 0.63 7.61 -51.93 -0.39 0.24 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.58 6.81 -51.93 -0.35 0.23 16 45 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 46 H 0.11 1.87 3.78 -51.93 -0.20 1.68 16 47 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 48 H 0.05 0.86 7.73 -51.93 -0.40 0.46 16 49 H 0.11 1.50 2.94 -84.72 -0.25 1.25 16 50 H 0.03 0.63 7.12 -51.93 -0.37 0.26 16 51 H 0.07 1.56 4.05 -51.93 -0.21 1.35 16 LS Contribution 368.80 15.07 5.56 5.56 Total: -1.00 -34.60 368.80 -9.12 -43.72 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -7.94 Total: 11.00 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: -1.88 Total: 9.53 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: 0.08 Total: -66.37 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.16 Total: -23.03 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.10 Total: 19.59 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.60 -9.12 -43.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197339315.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.992 kcal (2) G-P(sol) polarization free energy of solvation -34.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds