Wall clock time and date at job start Tue Mar 31 2020 22:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00076 * 2 1 4 4 H 1.48502 * 109.46824 * 90.00533 * 3 2 1 5 5 H 1.48491 * 109.46943 * 330.00297 * 3 2 1 6 6 H 1.48495 * 109.46967 * 210.00214 * 3 2 1 7 7 C 1.38811 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99794 * 204.67021 * 7 2 1 9 9 N 1.36938 * 119.99860 * 24.65706 * 7 2 1 10 10 C 1.43463 * 118.93758 * 216.27157 * 9 7 2 11 11 C 1.53238 * 108.26691 * 273.78551 * 10 9 7 12 12 C 1.47142 * 111.81190 * 281.68003 * 11 10 9 13 13 N 1.48210 * 110.34416 * 58.22571 * 12 11 10 14 14 C 1.34787 * 119.97227 * 102.46340 * 13 12 11 15 15 O 1.21280 * 119.99775 * 350.86602 * 14 13 12 16 16 C 1.50699 * 120.00120 * 170.86557 * 14 13 12 17 17 N 1.46501 * 109.46827 * 323.95320 * 16 14 13 18 18 C 1.34772 * 120.00168 * 302.56858 * 17 16 14 19 19 N 1.34782 * 120.00216 * 184.85577 * 18 17 16 20 20 O 1.21586 * 120.00005 * 4.84946 * 18 17 16 21 21 C 1.52989 * 109.46970 * 203.95372 * 16 14 13 22 22 C 1.53009 * 109.47176 * 180.02562 * 21 16 14 23 23 C 1.52992 * 109.46952 * 59.99782 * 22 21 16 24 24 C 1.53001 * 109.47231 * 300.00328 * 23 22 21 25 25 C 1.52998 * 109.46877 * 83.94966 * 16 14 13 26 26 C 1.43621 * 120.05812 * 282.48621 * 13 12 11 27 27 C 1.48857 * 118.94139 * 36.54980 * 9 7 2 28 28 H 0.97002 * 120.00216 * 182.04604 * 1 2 3 29 29 H 1.09000 * 109.76416 * 33.25481 * 10 9 7 30 30 H 1.09000 * 109.75860 * 154.01892 * 10 9 7 31 31 H 1.09000 * 109.07838 * 161.04542 * 11 10 9 32 32 H 1.08995 * 108.90646 * 42.19724 * 11 10 9 33 33 H 1.09004 * 109.32726 * 297.96351 * 12 11 10 34 34 H 1.08997 * 109.32666 * 178.49336 * 12 11 10 35 35 H 0.97005 * 119.99923 * 122.57105 * 17 16 14 36 36 H 0.97004 * 119.99342 * 5.11552 * 19 18 17 37 37 H 0.96992 * 119.99936 * 185.12083 * 19 18 17 38 38 H 1.09004 * 109.47278 * 299.99922 * 21 16 14 39 39 H 1.09000 * 109.47612 * 59.99893 * 21 16 14 40 40 H 1.09004 * 109.46876 * 300.00074 * 22 21 16 41 41 H 1.08994 * 109.46923 * 179.97438 * 22 21 16 42 42 H 1.08998 * 109.47241 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.47480 * 60.00084 * 23 22 21 44 44 H 1.09005 * 109.46956 * 299.99548 * 24 23 22 45 45 H 1.09011 * 109.47033 * 180.02562 * 24 23 22 46 46 H 1.08998 * 109.47340 * 300.00084 * 25 16 14 47 47 H 1.09004 * 109.46899 * 60.00368 * 25 16 14 48 48 H 1.08997 * 108.87478 * 329.88498 * 26 13 12 49 49 H 1.08996 * 108.79619 * 211.39244 * 26 13 12 50 50 H 1.09004 * 109.47571 * 260.60148 * 27 9 7 51 51 H 1.09006 * 109.47749 * 20.62489 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 1.4477 2.6526 -0.6999 6 1 3.5477 1.4401 -0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0163 -1.2450 0.3898 9 7 1.4191 -2.3338 -0.4958 10 6 1.6878 -3.5919 0.1390 11 6 2.9680 -4.1736 -0.4700 12 6 2.7188 -4.7860 -1.7845 13 7 2.1445 -3.7878 -2.7175 14 6 2.9244 -3.2177 -3.6574 15 8 4.1243 -3.3925 -3.6372 16 6 2.3053 -2.3633 -4.7334 17 7 1.0060 -2.9228 -5.1141 18 6 0.9233 -4.1922 -5.5594 19 7 -0.2544 -4.6758 -6.0018 20 8 1.9111 -4.9010 -5.5622 21 6 3.2261 -2.3350 -5.9549 22 6 2.5979 -1.4669 -7.0471 23 6 2.4061 -0.0436 -6.5199 24 6 1.4853 -0.0719 -5.2983 25 6 2.1130 -0.9398 -4.2065 26 6 0.7577 -3.4270 -2.6205 27 6 0.5235 -2.2197 -1.6793 28 1 -0.4850 -0.8395 0.0300 29 1 1.8298 -3.4419 1.2093 30 1 0.8558 -4.2754 -0.0308 31 1 3.3711 -4.9300 0.2033 32 1 3.6998 -3.3739 -0.5840 33 1 2.0210 -5.6155 -1.6696 34 1 3.6577 -5.1615 -2.1914 35 1 0.2052 -2.3797 -5.0456 36 1 -1.0246 -4.0899 -6.0695 37 1 -0.3319 -5.6096 -6.2523 38 1 4.1928 -1.9187 -5.6716 39 1 3.3631 -3.3491 -6.3302 40 1 1.6309 -1.8828 -7.3305 41 1 3.2541 -1.4464 -7.9172 42 1 1.9581 0.5747 -7.2978 43 1 3.3729 0.3723 -6.2365 44 1 0.5183 -0.4877 -5.5818 45 1 1.3483 0.9424 -4.9230 46 1 1.4570 -0.9600 -3.3363 47 1 3.0797 -0.5235 -3.9233 48 1 0.1964 -4.2820 -2.2437 49 1 0.3900 -3.1751 -3.6152 50 1 -0.5154 -2.2119 -1.3495 51 1 0.7425 -1.2948 -2.2130 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197339315.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:48 Heat of formation + Delta-G solvation = -40.563362 kcal Electronic energy + Delta-G solvation = -34154.035516 eV Core-core repulsion = 30088.918528 eV Total energy + Delta-G solvation = -4065.116988 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.73573 -40.30612 -39.16912 -38.41926 -36.22375 -35.37458 -34.61381 -33.70823 -32.71773 -31.78451 -30.74608 -29.22135 -27.20063 -25.45715 -24.88431 -23.80686 -23.31509 -22.45936 -21.56936 -20.54368 -20.18326 -19.43264 -19.24568 -18.29710 -17.78707 -17.47452 -16.76054 -16.34851 -16.29810 -16.03096 -15.75166 -15.54455 -15.41227 -15.19361 -14.98777 -14.71051 -14.59391 -14.20817 -14.12970 -13.79331 -13.58979 -13.33578 -13.25435 -13.15691 -12.94001 -12.82303 -12.55894 -12.19179 -12.06125 -12.04945 -11.92034 -11.89410 -11.71305 -11.48979 -11.38592 -11.25879 -10.91490 -10.81973 -10.61750 -10.37288 -9.78912 -9.38756 -8.77044 -8.14506 -5.44038 1.48366 1.55560 1.60227 1.80151 1.93007 2.02367 2.21175 2.62210 3.21742 3.39165 3.53090 3.62459 3.65887 3.70949 3.93299 4.06955 4.12303 4.16352 4.20196 4.24041 4.34771 4.43046 4.46062 4.47915 4.57023 4.60697 4.70603 4.73473 4.83295 4.91245 4.92737 5.02550 5.07019 5.11191 5.13126 5.18572 5.22488 5.28821 5.35350 5.38653 5.47818 5.51239 5.73063 5.82572 5.97954 6.04151 6.47339 6.58109 7.01297 7.20538 7.24514 7.63595 7.84405 8.25833 9.01782 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011275 B = 0.006182 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.786527 B = 4528.217196 C = 5687.663532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.048 4.048 3 Si 1.096 2.904 4 H -0.287 1.287 5 H -0.275 1.275 6 H -0.290 1.290 7 C -0.359 4.359 8 H 0.017 0.983 9 N -0.604 5.604 10 C 0.164 3.836 11 C -0.150 4.150 12 C 0.130 3.870 13 N -0.574 5.574 14 C 0.521 3.479 15 O -0.595 6.595 16 C 0.201 3.799 17 N -0.711 5.711 18 C 0.701 3.299 19 N -0.841 5.841 20 O -0.622 6.622 21 C -0.108 4.108 22 C -0.103 4.103 23 C -0.117 4.117 24 C -0.109 4.109 25 C -0.136 4.136 26 C 0.054 3.946 27 C 0.135 3.865 28 H 0.259 0.741 29 H 0.030 0.970 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.024 0.976 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.418 0.582 36 H 0.416 0.584 37 H 0.422 0.578 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.054 0.946 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.057 0.943 48 H 0.066 0.934 49 H 0.137 0.863 50 H 0.023 0.977 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.169 -4.541 -15.956 17.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.248 4.248 3 Si 0.922 3.078 4 H -0.214 1.214 5 H -0.200 1.200 6 H -0.217 1.217 7 C -0.490 4.490 8 H 0.035 0.965 9 N -0.327 5.327 10 C 0.037 3.963 11 C -0.191 4.191 12 C 0.008 3.992 13 N -0.303 5.303 14 C 0.309 3.691 15 O -0.475 6.475 16 C 0.111 3.889 17 N -0.374 5.374 18 C 0.400 3.600 19 N -0.411 5.411 20 O -0.502 6.502 21 C -0.147 4.147 22 C -0.140 4.140 23 C -0.155 4.155 24 C -0.147 4.147 25 C -0.174 4.174 26 C -0.072 4.072 27 C 0.010 3.990 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.043 0.957 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.259 0.741 36 H 0.247 0.753 37 H 0.256 0.744 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.073 0.927 44 H 0.106 0.894 45 H 0.093 0.907 46 H 0.101 0.899 47 H 0.076 0.924 48 H 0.085 0.915 49 H 0.153 0.847 50 H 0.041 0.959 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.863 -3.477 -15.924 17.009 hybrid contribution 0.104 -1.738 0.943 1.980 sum -4.760 -5.215 -14.981 16.561 Atomic orbital electron populations 1.70888 1.06822 1.29488 1.49222 1.26808 0.96604 1.03706 0.97666 0.83102 0.74163 0.73511 0.77013 1.21432 1.19962 1.21682 1.19807 0.96290 0.90288 1.42586 0.96508 1.43749 1.55544 1.03167 1.30218 1.20243 0.94123 0.87390 0.94550 1.21534 1.00575 0.99672 0.97282 1.20517 0.98920 0.90558 0.89212 1.47201 1.10725 1.40929 1.31403 1.21145 0.86354 0.79126 0.82476 1.90573 1.16849 1.62925 1.77198 1.20063 0.83681 0.92604 0.92599 1.45351 1.09764 1.13532 1.68784 1.16112 0.84522 0.81588 0.77802 1.42733 1.10691 1.16150 1.71549 1.91005 1.37404 1.59009 1.62743 1.21653 0.97621 1.01157 0.94319 1.21452 1.01356 0.94751 0.96448 1.21581 0.99800 0.96502 0.97591 1.21526 0.99444 0.99679 0.94021 1.22161 1.03021 0.91500 1.00712 1.23020 0.81544 0.98123 1.04486 1.22403 0.92472 0.97014 0.87102 0.93090 0.95157 0.93106 0.90286 0.95747 0.89747 0.92437 0.74104 0.75275 0.74439 0.92476 0.92405 0.90621 0.90782 0.89089 0.92744 0.89373 0.90656 0.89876 0.92391 0.91522 0.84706 0.95910 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.99 13.05 21.65 0.28 -51.71 16 2 C -0.05 -2.63 4.70 84.86 0.40 -2.23 16 3 Si 1.10 50.38 29.99 68.60 2.06 52.44 16 4 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 5 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.36 -20.00 9.01 84.03 0.76 -19.24 16 8 H 0.02 1.03 7.94 -2.91 -0.02 1.01 16 9 N -0.60 -29.06 2.26 -699.19 -1.58 -30.64 16 10 C 0.16 7.00 5.59 87.02 0.49 7.49 16 11 C -0.15 -6.02 5.63 28.85 0.16 -5.86 16 12 C 0.13 4.93 5.64 84.23 0.47 5.40 16 13 N -0.57 -21.91 2.34 -831.22 -1.94 -23.85 16 14 C 0.52 21.48 4.91 87.66 0.43 21.91 16 15 O -0.60 -29.62 15.60 -3.03 -0.05 -29.66 16 16 C 0.20 6.24 0.25 2.85 0.00 6.24 16 17 N -0.71 -15.86 1.64 -441.47 -0.73 -16.58 16 18 C 0.70 16.68 7.12 179.05 1.27 17.95 16 19 N -0.84 -10.57 8.88 -184.74 -1.64 -12.21 16 20 O -0.62 -21.76 14.51 -3.99 -0.06 -21.82 16 21 C -0.11 -3.28 4.08 30.59 0.12 -3.16 16 22 C -0.10 -2.10 5.77 30.59 0.18 -1.92 16 23 C -0.12 -2.20 5.92 30.59 0.18 -2.02 16 24 C -0.11 -2.30 5.75 30.58 0.18 -2.13 16 25 C -0.14 -4.21 4.69 30.58 0.14 -4.07 16 26 C 0.05 1.77 4.38 87.55 0.38 2.16 16 27 C 0.14 5.55 4.96 86.56 0.43 5.98 16 28 H 0.26 14.71 6.50 -92.71 -0.60 14.11 16 29 H 0.03 1.36 8.02 -2.39 -0.02 1.35 16 30 H 0.05 1.92 7.58 -2.39 -0.02 1.91 16 31 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.02 1.18 7.90 -2.39 -0.02 1.16 16 33 H 0.08 2.71 8.06 -2.39 -0.02 2.69 16 34 H 0.06 2.37 7.25 -2.39 -0.02 2.35 16 35 H 0.42 6.54 6.50 -92.70 -0.60 5.94 16 36 H 0.42 2.18 8.86 -92.71 -0.82 1.36 16 37 H 0.42 4.63 8.93 -92.71 -0.83 3.81 16 38 H 0.06 1.96 7.87 -2.39 -0.02 1.94 16 39 H 0.06 2.03 6.53 -2.39 -0.02 2.01 16 40 H 0.08 1.32 7.61 -2.39 -0.02 1.30 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.09 1.35 6.81 -2.38 -0.02 1.34 16 45 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 46 H 0.08 2.97 3.78 -2.39 -0.01 2.96 16 47 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.07 2.03 7.73 -2.39 -0.02 2.01 16 49 H 0.14 3.56 2.94 -67.14 -0.20 3.36 16 50 H 0.02 0.98 7.12 -2.39 -0.02 0.96 16 51 H 0.06 2.63 4.05 -2.38 -0.01 2.62 16 Total: -1.00 -80.01 368.80 0.66 -79.35 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: -1.29 Total: 28.21 kcal Atomic # 6 Polarization: 20.89 SS G_CDS: 5.60 Total: 26.49 kcal Atomic # 7 Polarization: -129.40 SS G_CDS: -5.60 Total: -135.00 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.11 Total: -51.48 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 2.06 Total: 52.44 kcal Total: -80.01 0.66 -79.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197339315.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.783 kcal (2) G-P(sol) polarization free energy of solvation -80.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds