Wall clock time and date at job start Tue Mar 31 2020 22:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 119.99862 * 2 1 4 4 H 1.48500 * 109.47094 * 269.99802 * 3 2 1 5 5 H 1.48494 * 109.47351 * 30.00357 * 3 2 1 6 6 H 1.48502 * 109.46804 * 149.99952 * 3 2 1 7 7 C 1.38814 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99911 * 0.02562 * 7 2 1 9 9 N 1.36930 * 119.99954 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00101 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.95174 * 26.90254 * 10 9 7 12 12 C 1.53957 * 113.66452 * 255.49811 * 10 9 7 13 13 C 1.53945 * 87.29527 * 270.26429 * 12 10 9 14 14 H 1.08994 * 113.66328 * 220.79509 * 13 12 10 15 15 N 1.46496 * 113.66561 * 89.82756 * 13 12 10 16 16 C 1.34771 * 119.99960 * 104.50930 * 15 13 12 17 17 O 1.21281 * 120.00381 * 359.97438 * 16 15 13 18 18 C 1.50707 * 120.00140 * 180.02562 * 16 15 13 19 19 C 1.52996 * 109.47263 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47177 * 179.97438 * 19 18 16 21 21 C 1.53005 * 109.47052 * 179.97438 * 20 19 18 22 22 N 1.46506 * 109.46965 * 179.97438 * 21 20 19 23 23 C 1.34769 * 120.00035 * 179.97438 * 22 21 20 24 24 N 1.34774 * 120.00019 * 180.02562 * 23 22 21 25 25 O 1.21588 * 119.99701 * 359.97438 * 23 22 21 26 26 C 1.52906 * 113.66637 * 158.31246 * 10 9 7 27 27 C 1.52911 * 121.13708 * 323.85381 * 26 10 9 28 28 C 1.53953 * 86.78498 * 209.37459 * 27 26 10 29 29 C 1.52908 * 121.14322 * 215.29266 * 26 10 9 30 30 H 0.97001 * 120.00208 * 359.97438 * 1 2 3 31 31 H 0.96999 * 119.99979 * 0.02562 * 9 7 2 32 32 H 1.09004 * 113.57788 * 24.86558 * 12 10 9 33 33 H 1.08997 * 113.58156 * 155.58012 * 12 10 9 34 34 H 0.97002 * 120.00399 * 284.50312 * 15 13 12 35 35 H 1.08999 * 109.46872 * 299.99621 * 18 16 15 36 36 H 1.09001 * 109.47078 * 59.99424 * 18 16 15 37 37 H 1.09005 * 109.46852 * 299.99465 * 19 18 16 38 38 H 1.09001 * 109.47283 * 59.99868 * 19 18 16 39 39 H 1.08999 * 109.47040 * 299.99990 * 20 19 18 40 40 H 1.09004 * 109.47495 * 59.99853 * 20 19 18 41 41 H 1.08998 * 109.46646 * 299.99563 * 21 20 19 42 42 H 1.09001 * 109.47247 * 60.00119 * 21 20 19 43 43 H 0.97000 * 119.99791 * 0.02562 * 22 21 20 44 44 H 0.97002 * 120.00408 * 359.97438 * 24 23 22 45 45 H 0.97006 * 119.99828 * 180.02562 * 24 23 22 46 46 H 1.09001 * 113.66341 * 323.84544 * 27 26 10 47 47 H 1.08996 * 113.66624 * 94.90194 * 27 26 10 48 48 H 1.09002 * 113.58246 * 270.13531 * 28 27 26 49 49 H 1.08997 * 113.65416 * 139.34277 * 28 27 26 50 50 H 1.09003 * 113.66175 * 265.09643 * 29 26 10 51 51 H 1.09004 * 113.66268 * 36.05302 * 29 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3795 -1.2022 -0.0011 10 6 4.1120 -2.4709 -0.0022 11 1 3.5492 -3.2863 -0.4567 12 6 4.7273 -2.8305 1.3625 13 6 5.9848 -2.0629 0.9158 14 1 6.9180 -2.5522 1.1945 15 7 5.9607 -0.6405 1.2655 16 6 6.7069 -0.1862 2.2917 17 8 7.3981 -0.9549 2.9260 18 6 6.6817 1.2770 2.6519 19 6 7.6089 1.5250 3.8434 20 6 7.5838 3.0105 4.2087 21 6 8.5105 3.2584 5.4006 22 7 8.4869 4.6810 5.7500 23 6 9.2321 5.1351 6.7770 24 7 9.2100 6.4437 7.0987 25 8 9.9236 4.3641 7.4139 26 6 5.5457 -2.3515 -0.5202 27 6 5.8971 -1.3963 -1.6615 28 6 7.0236 -2.3813 -2.0233 29 6 6.1891 -3.4755 -1.3330 30 1 -0.4850 0.8400 0.0004 31 1 3.8645 -0.3622 -0.0007 32 1 4.2134 -2.3714 2.2071 33 1 4.8926 -3.8992 1.4983 34 1 5.4077 -0.0256 0.7585 35 1 7.0191 1.8668 1.7996 36 1 5.6652 1.5687 2.9160 37 1 7.2710 0.9352 4.6956 38 1 8.6255 1.2332 3.5797 39 1 7.9218 3.6000 3.3564 40 1 6.5673 3.3028 4.4723 41 1 8.1719 2.6690 6.2527 42 1 9.5271 2.9661 5.1375 43 1 7.9343 5.2959 5.2425 44 1 8.6580 7.0588 6.5908 45 1 9.7466 6.7706 7.8377 46 1 5.1210 -1.3204 -2.4231 47 1 6.2573 -0.4247 -1.3236 48 1 7.9667 -2.1693 -1.5196 49 1 7.1422 -2.5351 -3.0959 50 1 6.7827 -4.1650 -0.7326 51 1 5.4947 -3.9850 -2.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203142898.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:30 Heat of formation + Delta-G solvation = -24.482769 kcal Electronic energy + Delta-G solvation = -29620.107051 eV Core-core repulsion = 25555.687370 eV Total energy + Delta-G solvation = -4064.419682 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.81842 -40.09349 -39.00769 -36.31518 -35.45270 -34.20087 -33.76643 -33.44036 -32.35620 -30.52727 -29.29749 -25.66510 -25.28730 -24.36459 -23.93665 -22.49496 -21.65118 -21.25764 -20.26371 -20.11266 -18.63676 -18.49810 -17.62406 -17.38048 -16.70995 -16.39099 -15.82158 -15.53211 -15.25939 -15.14882 -14.81743 -14.75955 -14.49549 -14.42877 -13.94537 -13.47634 -13.16738 -12.88196 -12.66014 -12.56271 -12.24522 -12.08962 -12.04078 -11.86072 -11.72802 -11.56006 -11.39851 -11.14514 -11.06491 -10.85544 -10.82197 -10.62365 -10.40211 -10.17687 -10.06804 -9.90954 -9.79380 -9.61218 -9.48316 -9.33685 -8.96890 -8.67516 -7.39307 -5.88889 -3.25279 2.56793 2.78359 2.90419 3.11867 3.23296 3.26957 3.32393 4.13126 4.43189 4.48353 4.56082 4.64756 4.68481 4.80819 4.86919 4.99190 5.04919 5.10325 5.18177 5.26078 5.30863 5.44114 5.48816 5.53210 5.54456 5.59452 5.69226 5.74467 5.83012 5.87831 5.96925 6.01268 6.01523 6.10220 6.12493 6.14306 6.16655 6.24728 6.35094 6.48915 6.54772 6.57014 6.60281 6.80160 6.93884 7.60145 7.70470 7.88296 8.29241 8.30379 8.39513 9.06426 9.78334 9.97134 11.29340 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010665 B = 0.002587 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.822290 B =10819.553765 C =12618.161521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.883 3.117 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.243 4.243 8 H 0.093 0.907 9 N -0.724 5.724 10 C 0.185 3.815 11 H 0.073 0.927 12 C -0.183 4.183 13 C 0.149 3.851 14 H 0.092 0.908 15 N -0.704 5.704 16 C 0.515 3.485 17 O -0.547 6.547 18 C -0.144 4.144 19 C -0.098 4.098 20 C -0.133 4.133 21 C 0.136 3.864 22 N -0.745 5.745 23 C 0.703 3.297 24 N -0.870 5.870 25 O -0.595 6.595 26 C -0.133 4.133 27 C -0.122 4.122 28 C -0.140 4.140 29 C -0.103 4.103 30 H 0.260 0.740 31 H 0.355 0.645 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.400 0.600 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.397 0.603 44 H 0.396 0.604 45 H 0.414 0.586 46 H 0.089 0.911 47 H 0.059 0.941 48 H 0.074 0.926 49 H 0.064 0.936 50 H 0.067 0.933 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.806 8.340 3.524 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.373 4.373 8 H 0.111 0.889 9 N -0.365 5.365 10 C 0.074 3.926 11 H 0.091 0.909 12 C -0.225 4.225 13 C 0.044 3.956 14 H 0.110 0.890 15 N -0.356 5.356 16 C 0.302 3.698 17 O -0.425 6.425 18 C -0.185 4.185 19 C -0.136 4.136 20 C -0.171 4.171 21 C 0.012 3.988 22 N -0.402 5.402 23 C 0.401 3.599 24 N -0.438 5.438 25 O -0.473 6.473 26 C -0.135 4.135 27 C -0.159 4.159 28 C -0.177 4.177 29 C -0.141 4.141 30 H 0.071 0.929 31 H 0.189 0.811 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.237 0.763 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.230 0.770 44 H 0.224 0.776 45 H 0.246 0.754 46 H 0.107 0.893 47 H 0.077 0.923 48 H 0.093 0.907 49 H 0.082 0.918 50 H 0.085 0.915 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 17.541 6.947 4.406 19.374 hybrid contribution -0.211 2.403 -0.389 2.443 sum 17.329 9.350 4.017 20.097 Atomic orbital electron populations 1.69684 1.05018 1.25847 1.57154 1.24680 0.95240 0.97068 1.02065 0.86606 0.78809 0.85436 0.77757 1.20892 1.21532 1.20943 1.19099 0.80192 0.94902 1.43102 0.88874 1.42434 1.03829 1.01222 1.88989 1.20989 0.89176 0.89759 0.92704 0.90920 1.24235 0.97081 0.99322 1.01861 1.21456 0.99119 0.81302 0.93713 0.88958 1.45812 1.46414 1.09585 1.33745 1.20600 0.78935 0.90612 0.79662 1.90672 1.41852 1.58438 1.51498 1.21701 1.02821 0.93575 1.00358 1.21194 1.00347 0.94429 0.97672 1.21835 1.00061 0.97668 0.97513 1.21261 1.00415 0.79622 0.97492 1.45147 1.49504 1.10743 1.34784 1.15996 0.80445 0.82645 0.80823 1.43003 1.53257 1.07754 1.39760 1.90987 1.45810 1.55648 1.54839 1.23433 0.98820 0.98365 0.92893 1.22574 0.98156 0.96955 0.98246 1.22838 0.97540 0.97253 1.00085 1.22483 0.98359 0.95298 0.97950 0.92933 0.81101 0.90828 0.90133 0.76305 0.88999 0.88625 0.90601 0.90758 0.91135 0.90983 0.91259 0.91340 0.76970 0.77597 0.75407 0.89284 0.92270 0.90716 0.91750 0.91459 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.95 13.97 55.49 0.78 -27.17 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 20.29 27.73 -169.99 -4.71 15.58 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -5.74 6.40 56.52 0.36 -5.38 16 7 C -0.24 -6.43 10.46 -15.06 -0.16 -6.59 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 9 N -0.72 -15.60 4.78 -52.99 -0.25 -15.85 16 10 C 0.19 3.34 4.35 -67.48 -0.29 3.04 16 11 H 0.07 1.35 8.12 -51.93 -0.42 0.93 16 12 C -0.18 -3.09 7.68 -25.75 -0.20 -3.29 16 13 C 0.15 2.32 4.07 -67.48 -0.27 2.05 16 14 H 0.09 1.46 7.54 -51.93 -0.39 1.07 16 15 N -0.70 -10.91 4.72 -53.37 -0.25 -11.16 16 16 C 0.52 7.80 7.83 -10.98 -0.09 7.72 16 17 O -0.55 -9.82 15.62 5.56 0.09 -9.73 16 18 C -0.14 -1.63 5.70 -27.88 -0.16 -1.79 16 19 C -0.10 -0.99 4.50 -26.73 -0.12 -1.11 16 20 C -0.13 -1.00 5.33 -26.73 -0.14 -1.15 16 21 C 0.14 1.21 5.67 -4.04 -0.02 1.19 16 22 N -0.75 -5.75 5.56 -65.22 -0.36 -6.11 16 23 C 0.70 7.02 8.84 -86.93 -0.77 6.26 16 24 N -0.87 -4.72 8.88 27.63 0.25 -4.47 16 25 O -0.59 -8.96 17.18 5.29 0.09 -8.87 16 26 C -0.13 -1.94 0.77 -154.71 -0.12 -2.06 16 27 C -0.12 -1.68 7.18 -26.28 -0.19 -1.87 16 28 C -0.14 -1.62 8.08 -25.75 -0.21 -1.83 16 29 C -0.10 -1.24 7.84 -26.28 -0.21 -1.45 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.36 7.33 3.25 -40.82 -0.13 7.20 16 32 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.40 6.32 5.82 -40.82 -0.24 6.08 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 38 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.40 1.85 8.49 -40.82 -0.35 1.50 16 44 H 0.40 0.88 8.84 -40.82 -0.36 0.52 16 45 H 0.41 1.91 8.93 -40.82 -0.36 1.55 16 46 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 47 H 0.06 0.81 7.51 -51.93 -0.39 0.42 16 48 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 409.79 15.07 6.18 6.18 Total: -1.00 -35.00 409.79 -9.83 -44.83 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: -8.58 Total: 17.61 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -3.04 Total: -0.83 kcal Atomic # 7 Polarization: -64.93 SS G_CDS: 0.15 Total: -64.77 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.18 Total: -18.59 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.71 Total: 15.58 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.00 -9.83 -44.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203142898.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.344 kcal (2) G-P(sol) polarization free energy of solvation -34.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds