Wall clock time and date at job start Tue Mar 31 2020 22:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09002 * 112.88911 * 25.05559 * 10 9 7 12 12 C 1.53952 * 113.65985 * 253.70920 * 10 9 7 13 13 C 1.53952 * 87.29627 * 270.26239 * 12 10 9 14 14 H 1.09003 * 113.66019 * 89.73416 * 13 12 10 15 15 N 1.46499 * 113.66328 * 220.70266 * 13 12 10 16 16 C 1.34778 * 119.99683 * 255.49356 * 15 13 12 17 17 O 1.21283 * 119.99887 * 0.02562 * 16 15 13 18 18 C 1.50698 * 119.99796 * 180.02562 * 16 15 13 19 19 C 1.52997 * 109.47224 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47532 * 179.97438 * 19 18 16 21 21 C 1.52997 * 109.47532 * 180.02562 * 20 19 18 22 22 N 1.46499 * 109.47370 * 180.02562 * 21 20 19 23 23 C 1.34772 * 120.00061 * 180.02562 * 22 21 20 24 24 N 1.34780 * 119.99935 * 179.97438 * 23 22 21 25 25 O 1.21586 * 120.00054 * 359.97438 * 23 22 21 26 26 C 1.52909 * 113.66261 * 156.40134 * 10 9 7 27 27 C 1.52909 * 121.14074 * 323.84830 * 26 10 9 28 28 C 1.53954 * 86.78350 * 209.37437 * 27 26 10 29 29 C 1.52905 * 121.14029 * 215.28267 * 26 10 9 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.08996 * 113.58246 * 24.86595 * 12 10 9 33 33 H 1.08999 * 113.57762 * 155.58681 * 12 10 9 34 34 H 0.96997 * 119.99860 * 75.49900 * 15 13 12 35 35 H 1.08996 * 109.46949 * 299.99705 * 18 16 15 36 36 H 1.08999 * 109.47308 * 59.99696 * 18 16 15 37 37 H 1.09008 * 109.46989 * 300.00108 * 19 18 16 38 38 H 1.08999 * 109.47224 * 59.99648 * 19 18 16 39 39 H 1.08996 * 109.46974 * 299.99912 * 20 19 18 40 40 H 1.08999 * 109.46974 * 59.99715 * 20 19 18 41 41 H 1.09008 * 109.46989 * 300.00328 * 21 20 19 42 42 H 1.08999 * 109.47224 * 59.99868 * 21 20 19 43 43 H 0.96998 * 119.99711 * 359.97438 * 22 21 20 44 44 H 0.96992 * 120.00065 * 359.97438 * 24 23 22 45 45 H 0.97002 * 119.99435 * 179.97438 * 24 23 22 46 46 H 1.09002 * 113.66323 * 323.85124 * 27 26 10 47 47 H 1.09001 * 113.66091 * 94.90602 * 27 26 10 48 48 H 1.08991 * 113.58006 * 270.13684 * 28 27 26 49 49 H 1.09002 * 113.57874 * 139.33852 * 28 27 26 50 50 H 1.08996 * 113.66435 * 265.10147 * 29 26 10 51 51 H 1.09003 * 113.66343 * 36.15604 * 29 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 3.0558 -3.5680 0.4369 12 6 2.0305 -4.3932 -1.3445 13 6 0.7476 -5.0902 -0.8560 14 1 -0.1656 -4.5490 -1.1035 15 7 0.6806 -6.5111 -1.2062 16 6 -0.1236 -6.9212 -2.2070 17 8 -0.7914 -6.1139 -2.8179 18 6 -0.1930 -8.3830 -2.5669 19 6 -1.1724 -8.5768 -3.7262 20 6 -1.2424 -10.0608 -4.0920 21 6 -2.2214 -10.2546 -5.2517 22 7 -2.2889 -11.6756 -5.6016 23 6 -3.0926 -12.0856 -6.6027 24 7 -3.1543 -13.3929 -6.9250 25 8 -3.7621 -11.2763 -7.2152 26 6 1.2507 -4.8285 0.5673 27 6 0.2764 -4.6337 1.7296 28 6 0.5752 -6.0949 2.1114 29 6 1.9225 -5.9327 1.3843 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 1.8706 -3.7335 -2.1972 33 1 2.8701 -5.0734 -1.4875 34 1 1.2149 -7.1567 -0.7178 35 1 0.7961 -8.7312 -2.8643 36 1 -0.5348 -8.9539 -1.7036 37 1 -2.1615 -8.2286 -3.4283 38 1 -0.8311 -8.0058 -4.5896 39 1 -0.2534 -10.4085 -4.3901 40 1 -1.5836 -10.6321 -3.2287 41 1 -3.2107 -9.9066 -4.9542 42 1 -1.8798 -9.6833 -6.1149 43 1 -1.7545 -12.3211 -5.1133 44 1 -2.6200 -14.0385 -6.4366 45 1 -3.7331 -13.6880 -7.6453 46 1 0.6174 -3.9096 2.4696 47 1 -0.7533 -4.4659 1.4138 48 1 -0.0921 -6.8146 1.6373 49 1 0.6754 -6.2533 3.1852 50 1 2.2080 -6.8025 0.7928 51 1 2.7262 -5.5738 2.0274 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203142901.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:40 Heat of formation + Delta-G solvation = -30.935143 kcal Electronic energy + Delta-G solvation = -28848.648137 eV Core-core repulsion = 24783.948660 eV Total energy + Delta-G solvation = -4064.699477 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.63589 -40.14678 -38.99334 -36.36839 -35.08464 -34.26133 -33.98840 -33.49746 -32.37366 -29.89734 -29.14030 -25.56687 -25.24655 -24.28615 -23.83751 -22.66140 -21.72532 -21.32056 -20.18142 -20.12134 -18.60443 -18.08008 -17.61960 -17.23912 -16.60523 -16.46261 -15.90593 -15.59977 -15.26474 -15.17084 -14.89217 -14.60058 -14.56061 -14.16440 -13.84372 -13.26720 -13.07274 -12.75450 -12.63198 -12.45579 -12.12677 -12.07249 -12.00763 -11.77779 -11.64361 -11.51787 -11.45993 -10.94028 -10.92681 -10.83990 -10.67256 -10.65829 -10.21723 -10.11901 -10.07405 -9.88814 -9.75318 -9.58043 -9.39834 -9.36443 -8.82716 -8.62378 -6.96658 -5.77400 -3.06887 2.50662 2.78543 2.85384 3.34172 3.44012 3.48904 3.50743 4.07327 4.41235 4.53786 4.59564 4.64234 4.70950 4.86738 4.92367 4.94950 5.01061 5.14193 5.17425 5.31414 5.36548 5.42582 5.45702 5.50122 5.61369 5.63715 5.74849 5.89790 5.93407 6.00145 6.02229 6.03763 6.05561 6.08956 6.10263 6.26262 6.29035 6.39797 6.48200 6.49384 6.64146 6.70989 6.76013 6.85901 7.09770 7.54392 7.69472 7.72027 8.24175 8.40735 8.41480 9.51877 10.08913 10.43255 11.44643 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017362 B = 0.001784 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.352425 B =15693.196744 C =16755.511522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.701 5.701 10 C 0.185 3.815 11 H 0.066 0.934 12 C -0.183 4.183 13 C 0.153 3.847 14 H 0.113 0.887 15 N -0.718 5.718 16 C 0.505 3.495 17 O -0.537 6.537 18 C -0.139 4.139 19 C -0.102 4.102 20 C -0.130 4.130 21 C 0.134 3.866 22 N -0.746 5.746 23 C 0.702 3.298 24 N -0.870 5.870 25 O -0.593 6.593 26 C -0.127 4.127 27 C -0.114 4.114 28 C -0.141 4.141 29 C -0.109 4.109 30 H 0.256 0.744 31 H 0.387 0.613 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.395 0.605 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.396 0.604 44 H 0.396 0.604 45 H 0.414 0.586 46 H 0.087 0.913 47 H 0.063 0.937 48 H 0.072 0.928 49 H 0.061 0.939 50 H 0.058 0.942 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.778 -30.282 -3.338 30.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.339 5.339 10 C 0.072 3.928 11 H 0.084 0.916 12 C -0.225 4.225 13 C 0.049 3.951 14 H 0.131 0.869 15 N -0.369 5.369 16 C 0.291 3.709 17 O -0.414 6.414 18 C -0.179 4.179 19 C -0.141 4.141 20 C -0.168 4.168 21 C 0.010 3.990 22 N -0.402 5.402 23 C 0.400 3.600 24 N -0.438 5.438 25 O -0.471 6.471 26 C -0.130 4.130 27 C -0.152 4.152 28 C -0.179 4.179 29 C -0.147 4.147 30 H 0.066 0.934 31 H 0.221 0.779 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.230 0.770 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.229 0.771 44 H 0.223 0.777 45 H 0.246 0.754 46 H 0.106 0.894 47 H 0.082 0.918 48 H 0.091 0.909 49 H 0.080 0.920 50 H 0.076 0.924 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.122 -28.645 -4.187 28.950 hybrid contribution 0.720 -0.238 0.352 0.836 sum 0.599 -28.883 -3.835 29.143 Atomic orbital electron populations 1.69669 1.05106 1.25781 1.57104 1.24760 0.95505 0.97734 1.02675 0.86184 0.78609 0.83794 0.77534 1.21692 1.21787 1.20751 1.19255 0.91047 0.83899 1.43307 0.91034 1.42087 1.05767 0.99123 1.86881 1.20791 0.94673 0.85089 0.92229 0.91604 1.24292 0.96123 0.99718 1.02381 1.22299 0.99652 0.79731 0.93380 0.86931 1.46149 1.45249 1.09858 1.35683 1.20674 0.79336 0.90813 0.80036 1.90746 1.43322 1.55753 1.51555 1.21659 1.01953 0.93916 1.00418 1.21225 1.00286 0.94437 0.98120 1.21807 0.99425 0.97788 0.97741 1.21275 1.00236 0.79741 0.97714 1.45132 1.47828 1.10018 1.37221 1.16008 0.80443 0.82885 0.80650 1.43003 1.51805 1.06876 1.42096 1.91000 1.47788 1.52907 1.55363 1.23535 0.98381 0.98104 0.92960 1.22547 0.99259 0.95530 0.97818 1.22871 0.97226 0.98121 0.99676 1.22510 0.97004 0.97189 0.98016 0.93414 0.77920 0.90979 0.91389 0.77038 0.89109 0.89136 0.90619 0.90607 0.91211 0.91210 0.91250 0.91241 0.77071 0.77654 0.75375 0.89432 0.91781 0.90926 0.91984 0.92352 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.70 -17.25 5.11 -52.99 -0.27 -17.52 16 10 C 0.19 3.58 4.35 -67.48 -0.29 3.29 16 11 H 0.07 1.27 8.11 -51.93 -0.42 0.85 16 12 C -0.18 -3.22 7.68 -25.74 -0.20 -3.42 16 13 C 0.15 2.50 4.01 -67.32 -0.27 2.23 16 14 H 0.11 2.27 7.54 -51.93 -0.39 1.88 16 15 N -0.72 -8.97 5.31 -53.22 -0.28 -9.26 16 16 C 0.51 6.72 7.83 -10.99 -0.09 6.63 16 17 O -0.54 -9.87 15.62 5.55 0.09 -9.78 16 18 C -0.14 -1.12 5.70 -27.89 -0.16 -1.28 16 19 C -0.10 -0.87 4.50 -26.73 -0.12 -0.99 16 20 C -0.13 -0.71 5.33 -26.73 -0.14 -0.86 16 21 C 0.13 1.03 5.67 -4.04 -0.02 1.01 16 22 N -0.75 -4.71 5.56 -65.22 -0.36 -5.07 16 23 C 0.70 6.29 8.84 -86.92 -0.77 5.52 16 24 N -0.87 -3.76 8.88 27.63 0.25 -3.51 16 25 O -0.59 -8.51 17.18 5.29 0.09 -8.42 16 26 C -0.13 -1.96 0.92 -154.55 -0.14 -2.10 16 27 C -0.11 -1.78 7.46 -26.28 -0.20 -1.98 16 28 C -0.14 -1.67 8.08 -25.75 -0.21 -1.88 16 29 C -0.11 -1.29 7.46 -26.28 -0.20 -1.48 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 31 H 0.39 10.25 7.78 -40.82 -0.32 9.94 16 32 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.39 3.71 6.69 -40.82 -0.27 3.44 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.76 8.10 -51.92 -0.42 0.34 16 38 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.40 1.15 8.49 -40.82 -0.35 0.81 16 44 H 0.40 0.36 8.84 -40.82 -0.36 0.00 16 45 H 0.41 1.53 8.93 -40.82 -0.36 1.17 16 46 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 51 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 415.89 15.07 6.27 6.27 Total: -1.00 -36.83 415.89 -10.27 -47.10 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -8.69 Total: 12.74 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -3.05 Total: -2.54 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: 0.05 Total: -62.70 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.18 Total: -18.21 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -36.83 -10.27 -47.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203142901.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.162 kcal (2) G-P(sol) polarization free energy of solvation -36.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds