Wall clock time and date at job start Tue Mar 31 2020 22:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09002 * 112.88911 * 25.05559 * 10 9 7 12 12 C 1.53952 * 113.65985 * 253.70920 * 10 9 7 13 13 C 1.53952 * 87.29627 * 270.26239 * 12 10 9 14 14 H 1.09003 * 113.66019 * 89.73416 * 13 12 10 15 15 N 1.46499 * 113.66328 * 220.70266 * 13 12 10 16 16 C 1.34778 * 119.99683 * 255.49356 * 15 13 12 17 17 O 1.21283 * 119.99887 * 0.02562 * 16 15 13 18 18 C 1.50698 * 119.99796 * 180.02562 * 16 15 13 19 19 C 1.52997 * 109.47224 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47532 * 179.97438 * 19 18 16 21 21 C 1.52997 * 109.47532 * 180.02562 * 20 19 18 22 22 N 1.46499 * 109.47370 * 180.02562 * 21 20 19 23 23 C 1.34772 * 120.00061 * 180.02562 * 22 21 20 24 24 N 1.34780 * 119.99935 * 179.97438 * 23 22 21 25 25 O 1.21586 * 120.00054 * 359.97438 * 23 22 21 26 26 C 1.52909 * 113.66261 * 156.40134 * 10 9 7 27 27 C 1.52909 * 121.14074 * 323.84830 * 26 10 9 28 28 C 1.53954 * 86.78350 * 209.37437 * 27 26 10 29 29 C 1.52905 * 121.14029 * 215.28267 * 26 10 9 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.08996 * 113.58246 * 24.86595 * 12 10 9 33 33 H 1.08999 * 113.57762 * 155.58681 * 12 10 9 34 34 H 0.96997 * 119.99860 * 75.49900 * 15 13 12 35 35 H 1.08996 * 109.46949 * 299.99705 * 18 16 15 36 36 H 1.08999 * 109.47308 * 59.99696 * 18 16 15 37 37 H 1.09008 * 109.46989 * 300.00108 * 19 18 16 38 38 H 1.08999 * 109.47224 * 59.99648 * 19 18 16 39 39 H 1.08996 * 109.46974 * 299.99912 * 20 19 18 40 40 H 1.08999 * 109.46974 * 59.99715 * 20 19 18 41 41 H 1.09008 * 109.46989 * 300.00328 * 21 20 19 42 42 H 1.08999 * 109.47224 * 59.99868 * 21 20 19 43 43 H 0.96998 * 119.99711 * 359.97438 * 22 21 20 44 44 H 0.96992 * 120.00065 * 359.97438 * 24 23 22 45 45 H 0.97002 * 119.99435 * 179.97438 * 24 23 22 46 46 H 1.09002 * 113.66323 * 323.85124 * 27 26 10 47 47 H 1.09001 * 113.66091 * 94.90602 * 27 26 10 48 48 H 1.08991 * 113.58006 * 270.13684 * 28 27 26 49 49 H 1.09002 * 113.57874 * 139.33852 * 28 27 26 50 50 H 1.08996 * 113.66435 * 265.10147 * 29 26 10 51 51 H 1.09003 * 113.66343 * 36.15604 * 29 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 3.0558 -3.5680 0.4369 12 6 2.0305 -4.3932 -1.3445 13 6 0.7476 -5.0902 -0.8560 14 1 -0.1656 -4.5490 -1.1035 15 7 0.6806 -6.5111 -1.2062 16 6 -0.1236 -6.9212 -2.2070 17 8 -0.7914 -6.1139 -2.8179 18 6 -0.1930 -8.3830 -2.5669 19 6 -1.1724 -8.5768 -3.7262 20 6 -1.2424 -10.0608 -4.0920 21 6 -2.2214 -10.2546 -5.2517 22 7 -2.2889 -11.6756 -5.6016 23 6 -3.0926 -12.0856 -6.6027 24 7 -3.1543 -13.3929 -6.9250 25 8 -3.7621 -11.2763 -7.2152 26 6 1.2507 -4.8285 0.5673 27 6 0.2764 -4.6337 1.7296 28 6 0.5752 -6.0949 2.1114 29 6 1.9225 -5.9327 1.3843 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 1.8706 -3.7335 -2.1972 33 1 2.8701 -5.0734 -1.4875 34 1 1.2149 -7.1567 -0.7178 35 1 0.7961 -8.7312 -2.8643 36 1 -0.5348 -8.9539 -1.7036 37 1 -2.1615 -8.2286 -3.4283 38 1 -0.8311 -8.0058 -4.5896 39 1 -0.2534 -10.4085 -4.3901 40 1 -1.5836 -10.6321 -3.2287 41 1 -3.2107 -9.9066 -4.9542 42 1 -1.8798 -9.6833 -6.1149 43 1 -1.7545 -12.3211 -5.1133 44 1 -2.6200 -14.0385 -6.4366 45 1 -3.7331 -13.6880 -7.6453 46 1 0.6174 -3.9096 2.4696 47 1 -0.7533 -4.4659 1.4138 48 1 -0.0921 -6.8146 1.6373 49 1 0.6754 -6.2533 3.1852 50 1 2.2080 -6.8025 0.7928 51 1 2.7262 -5.5738 2.0274 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203142901.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:39 Heat of formation + Delta-G solvation = -61.623867 kcal Electronic energy + Delta-G solvation = -28849.978900 eV Core-core repulsion = 24783.948660 eV Total energy + Delta-G solvation = -4066.030240 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.90792 -40.82571 -40.12460 -37.03589 -36.55117 -35.48192 -34.96826 -34.21481 -33.90949 -31.59211 -30.02504 -26.75603 -26.53658 -25.55586 -25.24815 -24.00224 -22.36065 -22.04762 -21.45698 -21.20348 -19.51089 -19.19857 -18.97077 -18.19534 -17.70273 -17.24952 -17.09051 -16.80498 -16.42514 -16.10247 -15.87805 -15.75236 -15.41000 -15.38951 -15.13636 -14.77129 -14.38838 -13.98474 -13.90399 -13.39060 -13.29903 -13.26028 -13.08946 -12.95754 -12.81485 -12.67763 -12.51971 -12.41279 -12.18385 -12.06944 -11.96454 -11.77806 -11.53277 -11.51401 -11.33271 -11.20940 -10.97224 -10.74535 -10.67998 -10.62406 -9.96461 -9.86248 -8.99045 -7.95557 -5.24488 1.45422 1.47831 1.55995 1.74816 1.95706 2.16878 2.32706 2.54276 3.36119 3.42773 3.52024 3.66948 3.79937 3.82744 3.88416 3.94651 4.05255 4.07142 4.22450 4.26009 4.34479 4.42303 4.55146 4.61385 4.65416 4.77266 4.79991 4.83939 4.90719 4.93572 4.99095 5.04928 5.06024 5.12970 5.14985 5.25164 5.31723 5.34511 5.41623 5.46645 5.51861 5.52224 5.60861 5.78991 5.92538 6.04633 6.26391 6.70830 7.14236 7.31362 7.42292 7.66890 8.09007 8.30658 9.27863 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017362 B = 0.001784 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.352425 B =15693.196744 C =16755.511522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.975 3.025 4 H -0.291 1.291 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.241 4.241 8 H 0.080 0.920 9 N -0.717 5.717 10 C 0.164 3.836 11 H 0.071 0.929 12 C -0.172 4.172 13 C 0.163 3.837 14 H 0.062 0.938 15 N -0.701 5.701 16 C 0.497 3.503 17 O -0.600 6.600 18 C -0.124 4.124 19 C -0.104 4.104 20 C -0.110 4.110 21 C 0.134 3.866 22 N -0.729 5.729 23 C 0.693 3.307 24 N -0.847 5.847 25 O -0.655 6.655 26 C -0.116 4.116 27 C -0.131 4.131 28 C -0.121 4.121 29 C -0.092 4.092 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.031 0.969 33 H 0.104 0.896 34 H 0.417 0.583 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.417 0.583 44 H 0.416 0.584 45 H 0.419 0.581 46 H 0.067 0.933 47 H 0.038 0.962 48 H 0.088 0.912 49 H 0.080 0.920 50 H 0.096 0.904 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.682 -34.822 -1.849 35.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.804 3.196 4 H -0.218 1.218 5 H -0.224 1.224 6 H -0.189 1.189 7 C -0.373 4.373 8 H 0.098 0.902 9 N -0.353 5.353 10 C 0.053 3.947 11 H 0.089 0.911 12 C -0.214 4.214 13 C 0.057 3.943 14 H 0.080 0.920 15 N -0.353 5.353 16 C 0.286 3.714 17 O -0.480 6.480 18 C -0.164 4.164 19 C -0.143 4.143 20 C -0.147 4.147 21 C 0.009 3.991 22 N -0.387 5.387 23 C 0.390 3.610 24 N -0.416 5.416 25 O -0.538 6.538 26 C -0.118 4.118 27 C -0.169 4.169 28 C -0.158 4.158 29 C -0.130 4.130 30 H 0.058 0.942 31 H 0.202 0.798 32 H 0.050 0.950 33 H 0.123 0.877 34 H 0.256 0.744 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.254 0.746 44 H 0.247 0.753 45 H 0.252 0.748 46 H 0.086 0.914 47 H 0.057 0.943 48 H 0.106 0.894 49 H 0.099 0.901 50 H 0.114 0.886 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.895 -33.338 -2.643 33.568 hybrid contribution -0.184 1.114 -0.151 1.139 sum 2.710 -32.224 -2.793 32.458 Atomic orbital electron populations 1.69848 1.06785 1.25974 1.59558 1.25600 0.96323 1.01245 1.03802 0.85120 0.77855 0.79427 0.77239 1.21848 1.22359 1.18883 1.19701 0.91589 0.85062 1.40917 0.90171 1.42244 1.05208 1.00583 1.87296 1.21122 0.95074 0.84460 0.94062 0.91086 1.24163 0.98126 0.99563 0.99517 1.21689 0.96849 0.81748 0.94040 0.91965 1.45899 1.45429 1.08288 1.35720 1.21777 0.77878 0.92867 0.78905 1.90740 1.45725 1.57982 1.53585 1.21697 1.03722 0.89672 1.01289 1.21191 0.99177 0.96307 0.97606 1.21652 1.00009 0.95613 0.97460 1.21173 0.99780 0.80279 0.97891 1.44890 1.47326 1.09869 1.36565 1.16338 0.80252 0.83650 0.80727 1.42779 1.51415 1.05584 1.41840 1.90961 1.50353 1.54904 1.57560 1.23428 0.98211 0.97677 0.92504 1.22594 0.97839 0.98614 0.97818 1.22798 0.97153 0.94710 1.01169 1.22536 0.96968 0.96342 0.97116 0.94164 0.79756 0.95019 0.87746 0.74418 0.85545 0.85473 0.93123 0.93192 0.88693 0.88638 0.93498 0.93523 0.74609 0.75297 0.74840 0.91445 0.94263 0.89372 0.90092 0.88612 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.63 13.06 21.65 0.28 -61.35 16 2 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 3 Si 0.97 47.23 29.55 68.60 2.03 49.25 16 4 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 6 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.24 -13.60 9.97 84.03 0.84 -12.76 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.72 -36.97 5.11 -321.55 -1.64 -38.61 16 10 C 0.16 6.37 4.35 45.28 0.20 6.56 16 11 H 0.07 2.66 8.11 -2.39 -0.02 2.64 16 12 C -0.17 -6.05 7.68 31.23 0.24 -5.81 16 13 C 0.16 5.35 4.01 45.38 0.18 5.53 16 14 H 0.06 2.72 7.54 -2.39 -0.02 2.71 16 15 N -0.70 -15.84 5.31 -440.67 -2.34 -18.18 16 16 C 0.50 12.58 7.83 87.66 0.69 13.26 16 17 O -0.60 -23.10 15.62 -3.04 -0.05 -23.15 16 18 C -0.12 -1.52 5.70 29.85 0.17 -1.35 16 19 C -0.10 -1.64 4.50 30.59 0.14 -1.50 16 20 C -0.11 -0.87 5.33 30.59 0.16 -0.70 16 21 C 0.13 1.98 5.67 86.38 0.49 2.47 16 22 N -0.73 -7.92 5.56 -478.54 -2.66 -10.58 16 23 C 0.69 11.91 8.84 179.05 1.58 13.49 16 24 N -0.85 -5.80 8.88 -184.75 -1.64 -7.44 16 25 O -0.66 -19.51 17.18 -3.99 -0.07 -19.58 16 26 C -0.12 -3.47 0.92 -52.21 -0.05 -3.51 16 27 C -0.13 -4.10 7.46 30.89 0.23 -3.87 16 28 C -0.12 -2.43 8.08 31.23 0.25 -2.18 16 29 C -0.09 -1.76 7.46 30.88 0.23 -1.53 16 30 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 31 H 0.37 21.14 7.78 -92.71 -0.72 20.42 16 32 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 34 H 0.42 5.68 6.69 -92.71 -0.62 5.06 16 35 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.05 1.04 8.10 -2.38 -0.02 1.02 16 38 H 0.05 1.03 8.10 -2.39 -0.02 1.02 16 39 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.05 0.90 8.14 -2.38 -0.02 0.89 16 42 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.42 0.95 8.49 -92.71 -0.79 0.17 16 44 H 0.42 -0.46 8.84 -92.71 -0.82 -1.28 16 45 H 0.42 2.52 8.93 -92.71 -0.83 1.69 16 46 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.10 1.18 6.43 -2.39 -0.02 1.16 16 51 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -90.90 415.89 -3.06 -93.96 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: -2.79 Total: 31.68 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 5.82 Total: 3.99 kcal Atomic # 7 Polarization: -128.17 SS G_CDS: -8.00 Total: -136.17 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -0.12 Total: -42.72 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.25 kcal Total: -90.90 -3.06 -93.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203142901.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.335 kcal (2) G-P(sol) polarization free energy of solvation -90.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds