Wall clock time and date at job start Tue Mar 31 2020 22:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00023 * 2 1 4 4 H 1.48499 * 109.46981 * 269.99547 * 3 2 1 5 5 H 1.48498 * 109.47313 * 29.99724 * 3 2 1 6 6 H 1.48499 * 109.47024 * 149.99905 * 3 2 1 7 7 C 1.38815 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00051 * 359.97438 * 7 2 1 9 9 N 1.36946 * 119.99600 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99533 * 179.72628 * 9 7 2 11 11 H 1.09002 * 109.49924 * 325.05980 * 10 9 7 12 12 C 1.53039 * 109.49972 * 85.16068 * 10 9 7 13 13 C 1.53042 * 109.53960 * 181.31890 * 12 10 9 14 14 C 1.53194 * 109.30718 * 298.63403 * 13 12 10 15 15 N 1.46921 * 108.78099 * 54.63619 * 14 13 12 16 16 C 1.34773 * 120.63506 * 126.36415 * 15 14 13 17 17 O 1.21284 * 120.00496 * 174.78930 * 16 15 14 18 18 C 1.50701 * 119.99879 * 354.79238 * 16 15 14 19 19 N 1.46503 * 109.46915 * 315.55687 * 18 16 15 20 20 C 1.34774 * 120.00348 * 304.40026 * 19 18 16 21 21 N 1.34772 * 120.00505 * 175.23042 * 20 19 18 22 22 O 1.21589 * 119.99664 * 355.23221 * 20 19 18 23 23 C 1.52999 * 109.47426 * 195.55952 * 18 16 15 24 24 C 1.52995 * 109.47103 * 180.02562 * 23 18 16 25 25 C 1.52995 * 109.47699 * 59.99662 * 24 23 18 26 26 C 1.52999 * 109.47119 * 300.00328 * 25 24 23 27 27 C 1.52994 * 109.47473 * 59.99358 * 26 25 24 28 28 C 1.46927 * 118.73799 * 306.39289 * 15 14 13 29 29 H 0.96994 * 119.99869 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00481 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.45920 * 301.33434 * 12 10 9 32 32 H 1.08993 * 109.45935 * 61.29125 * 12 10 9 33 33 H 1.08994 * 109.49761 * 178.68564 * 13 12 10 34 34 H 1.08998 * 109.52393 * 58.59898 * 13 12 10 35 35 H 1.09001 * 109.58901 * 294.84422 * 14 13 12 36 36 H 1.09004 * 109.58256 * 174.42627 * 14 13 12 37 37 H 0.97007 * 119.99980 * 124.40546 * 19 18 16 38 38 H 0.97004 * 119.99579 * 0.02562 * 21 20 19 39 39 H 0.96997 * 120.00167 * 180.02562 * 21 20 19 40 40 H 1.09007 * 109.46478 * 299.99786 * 23 18 16 41 41 H 1.08995 * 109.47202 * 59.99501 * 23 18 16 42 42 H 1.09000 * 109.47457 * 299.99356 * 24 23 18 43 43 H 1.09010 * 109.46813 * 179.97438 * 24 23 18 44 44 H 1.08995 * 109.47397 * 179.97438 * 25 24 23 45 45 H 1.09000 * 109.47322 * 60.00024 * 25 24 23 46 46 H 1.09007 * 109.46478 * 299.99750 * 26 25 24 47 47 H 1.08995 * 109.47202 * 180.02562 * 26 25 24 48 48 H 1.09001 * 109.47398 * 180.02562 * 27 26 25 49 49 H 1.09011 * 109.46922 * 60.00167 * 27 26 25 50 50 H 1.09000 * 109.58382 * 293.82001 * 28 15 14 51 51 H 1.08997 * 109.70381 * 173.46068 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0077 11 1 3.5644 -3.2041 0.5996 12 6 4.2627 -2.9813 -1.4272 13 6 4.9990 -4.3229 -1.4186 14 6 6.3979 -4.1292 -0.8250 15 7 6.2679 -3.5038 0.4981 16 6 6.8406 -4.0641 1.5818 17 8 6.8069 -3.4909 2.6502 18 6 7.5229 -5.4028 1.4662 19 7 6.6845 -6.3119 0.6808 20 6 5.4109 -6.5463 1.0544 21 7 4.6104 -7.3056 0.2805 22 8 4.9842 -6.0726 2.0897 23 6 7.7390 -5.9875 2.8634 24 6 8.4323 -7.3463 2.7460 25 6 9.7844 -7.1709 2.0518 26 6 9.5682 -6.5861 0.6546 27 6 8.8749 -5.2273 0.7719 28 6 5.5010 -2.2562 0.6175 29 1 -0.4849 0.8400 -0.0004 30 1 3.8647 -0.3621 0.0007 31 1 3.2760 -3.1115 -1.8717 32 1 4.8317 -2.2585 -2.0119 33 1 5.0853 -4.6971 -2.4386 34 1 4.4432 -5.0396 -0.8139 35 1 6.9858 -3.4841 -1.4779 36 1 6.8896 -5.0969 -0.7250 37 1 7.0460 -6.7453 -0.1082 38 1 4.9510 -7.6837 -0.5454 39 1 3.6937 -7.4739 0.5492 40 1 8.3628 -5.3110 3.4478 41 1 6.7758 -6.1121 3.3582 42 1 7.8089 -8.0230 2.1615 43 1 8.5867 -7.7627 3.7415 44 1 10.2784 -8.1388 1.9685 45 1 10.4078 -6.4943 2.6363 46 1 8.9447 -7.2628 0.0701 47 1 10.5314 -6.4616 0.1598 48 1 8.7205 -4.8110 -0.2235 49 1 9.4984 -4.5507 1.3565 50 1 6.0157 -1.4584 0.0822 51 1 5.4008 -1.9856 1.6686 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209952292.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:39 Heat of formation + Delta-G solvation = -43.758221 kcal Electronic energy + Delta-G solvation = -32713.227582 eV Core-core repulsion = 28647.972054 eV Total energy + Delta-G solvation = -4065.255528 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.60226 -39.11661 -38.25502 -37.10067 -34.82328 -33.99215 -33.46518 -32.07994 -31.35089 -31.10088 -29.89834 -28.73123 -25.56403 -23.95020 -23.13069 -22.90847 -22.01932 -21.73042 -20.36179 -19.54508 -19.05973 -18.57982 -17.58591 -17.40541 -16.60078 -16.31593 -15.43482 -15.33060 -14.90523 -14.66167 -14.49179 -14.42946 -14.12867 -13.92136 -13.89188 -13.63655 -13.44915 -13.04183 -12.77460 -12.68338 -12.54296 -12.49772 -12.34495 -12.26181 -11.51953 -11.29663 -11.08998 -10.98573 -10.89425 -10.85632 -10.70122 -10.59235 -10.47390 -10.36658 -10.17779 -10.04718 -9.84878 -9.68491 -9.56488 -8.89609 -8.81439 -8.35170 -7.25037 -5.73813 -3.09810 2.42592 2.91985 3.09839 3.24494 3.40603 3.44347 3.48504 4.23960 4.29346 4.33728 4.40345 4.62307 4.72198 4.81925 4.90987 4.95773 5.08655 5.12094 5.14807 5.23778 5.30077 5.41820 5.43058 5.49970 5.57050 5.59972 5.65399 5.70224 5.74632 5.77691 5.80555 5.92384 5.96356 6.02602 6.10504 6.15128 6.25539 6.31301 6.36034 6.47981 6.53007 6.69697 6.81458 6.85358 7.00935 7.62031 7.77201 8.01860 8.37671 8.44842 8.55012 9.22675 9.95107 10.14485 11.44512 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019387 B = 0.003439 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.886609 B = 8139.666426 C = 8467.834300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.240 4.240 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.175 3.825 11 H 0.058 0.942 12 C -0.134 4.134 13 C -0.135 4.135 14 C 0.094 3.906 15 N -0.597 5.597 16 C 0.522 3.478 17 O -0.529 6.529 18 C 0.189 3.811 19 N -0.734 5.734 20 C 0.704 3.296 21 N -0.866 5.866 22 O -0.567 6.567 23 C -0.116 4.116 24 C -0.114 4.114 25 C -0.122 4.122 26 C -0.115 4.115 27 C -0.126 4.126 28 C 0.105 3.895 29 H 0.259 0.741 30 H 0.361 0.639 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.397 0.603 38 H 0.394 0.606 39 H 0.417 0.583 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.070 0.930 48 H 0.078 0.922 49 H 0.087 0.913 50 H 0.060 0.940 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.518 -19.781 -4.286 30.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.370 4.370 8 H 0.108 0.892 9 N -0.387 5.387 10 C 0.065 3.935 11 H 0.076 0.924 12 C -0.175 4.175 13 C -0.174 4.174 14 C -0.030 4.030 15 N -0.330 5.330 16 C 0.307 3.693 17 O -0.404 6.404 18 C 0.099 3.901 19 N -0.395 5.395 20 C 0.403 3.597 21 N -0.435 5.435 22 O -0.442 6.442 23 C -0.155 4.155 24 C -0.152 4.152 25 C -0.159 4.159 26 C -0.153 4.153 27 C -0.164 4.164 28 C -0.018 4.018 29 H 0.069 0.931 30 H 0.193 0.807 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.234 0.766 38 H 0.221 0.779 39 H 0.249 0.751 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.106 0.894 50 H 0.078 0.922 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 22.012 -19.006 -2.749 29.211 hybrid contribution 0.290 0.816 -0.947 1.283 sum 22.301 -18.190 -3.695 29.015 Atomic orbital electron populations 1.69698 1.05093 1.25800 1.57582 1.24658 0.95228 0.97169 1.02006 0.86550 0.79355 0.85006 0.77670 1.21137 1.21709 1.20240 1.19039 0.80329 0.94711 1.42913 0.89247 1.42678 1.04076 1.01732 1.90258 1.20420 0.90150 0.89541 0.93434 0.92358 1.22200 1.00397 0.94708 1.00185 1.21969 0.95641 0.99613 1.00165 1.22196 0.98210 0.98751 0.83828 1.47896 1.52037 1.25469 1.07578 1.20493 0.78733 0.86435 0.83596 1.90689 1.58671 1.63689 1.27370 1.20306 0.89724 0.86579 0.93492 1.45413 1.11757 1.50631 1.31730 1.15931 0.80847 0.79325 0.83616 1.43013 1.16373 1.57120 1.26947 1.91066 1.74294 1.54513 1.24376 1.21772 1.03261 0.96258 0.94220 1.21489 0.95834 0.97201 1.00630 1.21584 0.97607 1.00853 0.95897 1.21510 1.00491 0.95561 0.97691 1.21945 0.93869 0.99159 1.01445 1.21955 0.92079 0.84586 1.03183 0.93073 0.80678 0.91288 0.92754 0.91641 0.91429 0.92062 0.89015 0.76647 0.77886 0.75065 0.90377 0.89072 0.92057 0.91754 0.91923 0.91693 0.91929 0.91154 0.90386 0.89409 0.92198 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.91 13.97 55.49 0.78 -29.14 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 22.68 27.74 -169.99 -4.71 17.96 16 4 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.28 -6.75 6.52 56.52 0.37 -6.38 16 7 C -0.24 -6.96 10.41 -15.05 -0.16 -7.11 16 8 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 9 N -0.75 -18.28 4.93 -53.31 -0.26 -18.55 16 10 C 0.17 3.58 2.92 -67.81 -0.20 3.38 16 11 H 0.06 1.37 8.08 -51.93 -0.42 0.95 16 12 C -0.13 -2.28 5.47 -26.69 -0.15 -2.42 16 13 C -0.13 -1.65 6.05 -26.61 -0.16 -1.81 16 14 C 0.09 1.02 4.67 -3.71 -0.02 1.01 16 15 N -0.60 -8.98 2.95 -172.77 -0.51 -9.49 16 16 C 0.52 8.30 5.06 -10.99 -0.06 8.24 16 17 O -0.53 -10.77 15.44 5.55 0.09 -10.68 16 18 C 0.19 2.05 0.25 -132.97 -0.03 2.02 16 19 N -0.73 -6.33 1.89 -53.50 -0.10 -6.43 16 20 C 0.70 8.27 6.74 -86.92 -0.59 7.68 16 21 N -0.87 -6.64 8.22 27.63 0.23 -6.41 16 22 O -0.57 -10.07 14.45 5.29 0.08 -9.99 16 23 C -0.12 -1.38 4.00 -26.73 -0.11 -1.49 16 24 C -0.11 -0.94 5.76 -26.74 -0.15 -1.10 16 25 C -0.12 -0.75 5.92 -26.73 -0.16 -0.90 16 26 C -0.11 -0.59 5.75 -26.73 -0.15 -0.74 16 27 C -0.13 -0.94 4.52 -26.73 -0.12 -1.06 16 28 C 0.10 1.93 5.88 -3.71 -0.02 1.91 16 29 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 30 H 0.36 8.68 5.66 -40.82 -0.23 8.45 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.88 6.22 -51.93 -0.32 0.56 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.73 3.07 -51.93 -0.16 0.57 16 37 H 0.40 1.98 6.35 -40.82 -0.26 1.72 16 38 H 0.39 1.55 8.85 -40.82 -0.36 1.19 16 39 H 0.42 3.32 8.93 -40.82 -0.36 2.96 16 40 H 0.08 0.98 7.93 -51.93 -0.41 0.56 16 41 H 0.09 1.42 6.33 -51.93 -0.33 1.09 16 42 H 0.06 0.50 7.61 -51.93 -0.39 0.10 16 43 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.24 6.78 -51.93 -0.35 -0.11 16 47 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 48 H 0.08 0.50 6.24 -51.93 -0.32 0.18 16 49 H 0.09 0.72 8.14 -51.92 -0.42 0.29 16 50 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 51 H 0.09 1.94 7.05 -51.93 -0.37 1.57 16 LS Contribution 376.10 15.07 5.67 5.67 Total: -1.00 -38.45 376.10 -9.04 -47.49 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -8.11 Total: 11.90 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -2.17 Total: 7.67 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: 0.13 Total: -70.02 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.16 Total: -20.67 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.71 Total: 17.96 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.45 -9.04 -47.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209952292.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.728 kcal (2) G-P(sol) polarization free energy of solvation -38.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds