Wall clock time and date at job start Tue Mar 31 2020 22:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00023 * 2 1 4 4 H 1.48499 * 109.46981 * 269.99547 * 3 2 1 5 5 H 1.48498 * 109.47313 * 29.99724 * 3 2 1 6 6 H 1.48499 * 109.47024 * 149.99905 * 3 2 1 7 7 C 1.38815 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00051 * 359.97438 * 7 2 1 9 9 N 1.36946 * 119.99600 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99533 * 179.72628 * 9 7 2 11 11 H 1.09002 * 109.49924 * 325.05980 * 10 9 7 12 12 C 1.53039 * 109.49972 * 85.16068 * 10 9 7 13 13 C 1.53042 * 109.53960 * 181.31890 * 12 10 9 14 14 C 1.53194 * 109.30718 * 298.63403 * 13 12 10 15 15 N 1.46921 * 108.78099 * 54.63619 * 14 13 12 16 16 C 1.34773 * 120.63506 * 126.36415 * 15 14 13 17 17 O 1.21284 * 120.00496 * 174.78930 * 16 15 14 18 18 C 1.50701 * 119.99879 * 354.79238 * 16 15 14 19 19 N 1.46503 * 109.46915 * 315.55687 * 18 16 15 20 20 C 1.34774 * 120.00348 * 304.40026 * 19 18 16 21 21 N 1.34772 * 120.00505 * 175.23042 * 20 19 18 22 22 O 1.21589 * 119.99664 * 355.23221 * 20 19 18 23 23 C 1.52999 * 109.47426 * 195.55952 * 18 16 15 24 24 C 1.52995 * 109.47103 * 180.02562 * 23 18 16 25 25 C 1.52995 * 109.47699 * 59.99662 * 24 23 18 26 26 C 1.52999 * 109.47119 * 300.00328 * 25 24 23 27 27 C 1.52994 * 109.47473 * 59.99358 * 26 25 24 28 28 C 1.46927 * 118.73799 * 306.39289 * 15 14 13 29 29 H 0.96994 * 119.99869 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00481 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.45920 * 301.33434 * 12 10 9 32 32 H 1.08993 * 109.45935 * 61.29125 * 12 10 9 33 33 H 1.08994 * 109.49761 * 178.68564 * 13 12 10 34 34 H 1.08998 * 109.52393 * 58.59898 * 13 12 10 35 35 H 1.09001 * 109.58901 * 294.84422 * 14 13 12 36 36 H 1.09004 * 109.58256 * 174.42627 * 14 13 12 37 37 H 0.97007 * 119.99980 * 124.40546 * 19 18 16 38 38 H 0.97004 * 119.99579 * 0.02562 * 21 20 19 39 39 H 0.96997 * 120.00167 * 180.02562 * 21 20 19 40 40 H 1.09007 * 109.46478 * 299.99786 * 23 18 16 41 41 H 1.08995 * 109.47202 * 59.99501 * 23 18 16 42 42 H 1.09000 * 109.47457 * 299.99356 * 24 23 18 43 43 H 1.09010 * 109.46813 * 179.97438 * 24 23 18 44 44 H 1.08995 * 109.47397 * 179.97438 * 25 24 23 45 45 H 1.09000 * 109.47322 * 60.00024 * 25 24 23 46 46 H 1.09007 * 109.46478 * 299.99750 * 26 25 24 47 47 H 1.08995 * 109.47202 * 180.02562 * 26 25 24 48 48 H 1.09001 * 109.47398 * 180.02562 * 27 26 25 49 49 H 1.09011 * 109.46922 * 60.00167 * 27 26 25 50 50 H 1.09000 * 109.58382 * 293.82001 * 28 15 14 51 51 H 1.08997 * 109.70381 * 173.46068 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0077 11 1 3.5644 -3.2041 0.5996 12 6 4.2627 -2.9813 -1.4272 13 6 4.9990 -4.3229 -1.4186 14 6 6.3979 -4.1292 -0.8250 15 7 6.2679 -3.5038 0.4981 16 6 6.8406 -4.0641 1.5818 17 8 6.8069 -3.4909 2.6502 18 6 7.5229 -5.4028 1.4662 19 7 6.6845 -6.3119 0.6808 20 6 5.4109 -6.5463 1.0544 21 7 4.6104 -7.3056 0.2805 22 8 4.9842 -6.0726 2.0897 23 6 7.7390 -5.9875 2.8634 24 6 8.4323 -7.3463 2.7460 25 6 9.7844 -7.1709 2.0518 26 6 9.5682 -6.5861 0.6546 27 6 8.8749 -5.2273 0.7719 28 6 5.5010 -2.2562 0.6175 29 1 -0.4849 0.8400 -0.0004 30 1 3.8647 -0.3621 0.0007 31 1 3.2760 -3.1115 -1.8717 32 1 4.8317 -2.2585 -2.0119 33 1 5.0853 -4.6971 -2.4386 34 1 4.4432 -5.0396 -0.8139 35 1 6.9858 -3.4841 -1.4779 36 1 6.8896 -5.0969 -0.7250 37 1 7.0460 -6.7453 -0.1082 38 1 4.9510 -7.6837 -0.5454 39 1 3.6937 -7.4739 0.5492 40 1 8.3628 -5.3110 3.4478 41 1 6.7758 -6.1121 3.3582 42 1 7.8089 -8.0230 2.1615 43 1 8.5867 -7.7627 3.7415 44 1 10.2784 -8.1388 1.9685 45 1 10.4078 -6.4943 2.6363 46 1 8.9447 -7.2628 0.0701 47 1 10.5314 -6.4616 0.1598 48 1 8.7205 -4.8110 -0.2235 49 1 9.4984 -4.5507 1.3565 50 1 6.0157 -1.4584 0.0822 51 1 5.4008 -1.9856 1.6686 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209952292.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:38 Heat of formation + Delta-G solvation = -75.408331 kcal Electronic energy + Delta-G solvation = -32714.600034 eV Core-core repulsion = 28647.972054 eV Total energy + Delta-G solvation = -4066.627980 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.59168 -40.28702 -39.27801 -38.34946 -36.44431 -35.11540 -34.40194 -33.69055 -32.94088 -31.83125 -30.84069 -30.28754 -26.75500 -25.72353 -24.06536 -23.79617 -23.29941 -22.72414 -21.67989 -20.60790 -20.17897 -19.61309 -19.41660 -18.36681 -17.56577 -17.42936 -16.83773 -16.38498 -16.15079 -15.99227 -15.63474 -15.48090 -15.31940 -15.21472 -15.11424 -14.75381 -14.63031 -14.51269 -14.14239 -13.87818 -13.78516 -13.32154 -13.22957 -13.17261 -13.01525 -12.92624 -12.54673 -12.22491 -12.12070 -12.05018 -11.85466 -11.82154 -11.79764 -11.64718 -11.44563 -11.33812 -11.22731 -10.99383 -10.81308 -10.58709 -9.80152 -9.67704 -9.35185 -8.07562 -5.42523 1.33427 1.38061 1.39107 1.45002 1.83282 2.05542 2.24393 2.43880 3.23007 3.33161 3.52637 3.58484 3.65978 3.73860 3.93042 3.96594 4.07140 4.15265 4.15822 4.24215 4.26277 4.28821 4.49128 4.52111 4.54905 4.66931 4.72386 4.76566 4.79558 4.82193 5.01007 5.03908 5.09340 5.16180 5.19933 5.23949 5.30543 5.36702 5.39395 5.43394 5.46782 5.49724 5.56422 5.70606 5.90007 6.02530 6.15534 6.44219 7.00200 7.10987 7.15649 7.70574 7.74184 7.95424 9.14090 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019387 B = 0.003439 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.886609 B = 8139.666426 C = 8467.834300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.062 4.062 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.295 1.295 6 H -0.258 1.258 7 C -0.231 4.231 8 H 0.049 0.951 9 N -0.749 5.749 10 C 0.175 3.825 11 H 0.013 0.987 12 C -0.125 4.125 13 C -0.127 4.127 14 C 0.088 3.912 15 N -0.595 5.595 16 C 0.510 3.490 17 O -0.588 6.588 18 C 0.199 3.801 19 N -0.712 5.712 20 C 0.700 3.300 21 N -0.846 5.846 22 O -0.634 6.634 23 C -0.115 4.115 24 C -0.106 4.106 25 C -0.120 4.120 26 C -0.109 4.109 27 C -0.122 4.122 28 C 0.114 3.886 29 H 0.259 0.741 30 H 0.366 0.634 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.127 0.873 37 H 0.421 0.579 38 H 0.416 0.584 39 H 0.417 0.583 40 H 0.060 0.940 41 H 0.043 0.957 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.059 0.941 46 H 0.085 0.915 47 H 0.095 0.905 48 H 0.100 0.900 49 H 0.079 0.921 50 H 0.082 0.918 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.718 -21.346 -7.830 35.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.253 4.253 3 Si 0.785 3.215 4 H -0.194 1.194 5 H -0.222 1.222 6 H -0.183 1.183 7 C -0.362 4.362 8 H 0.067 0.933 9 N -0.393 5.393 10 C 0.066 3.934 11 H 0.032 0.968 12 C -0.165 4.165 13 C -0.166 4.166 14 C -0.033 4.033 15 N -0.328 5.328 16 C 0.298 3.702 17 O -0.467 6.467 18 C 0.108 3.892 19 N -0.376 5.376 20 C 0.398 3.602 21 N -0.415 5.415 22 O -0.514 6.514 23 C -0.154 4.154 24 C -0.144 4.144 25 C -0.157 4.157 26 C -0.146 4.146 27 C -0.160 4.160 28 C -0.010 4.010 29 H 0.068 0.932 30 H 0.199 0.801 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.129 0.871 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.145 0.855 37 H 0.263 0.737 38 H 0.248 0.752 39 H 0.249 0.751 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.102 0.898 45 H 0.078 0.922 46 H 0.103 0.897 47 H 0.114 0.886 48 H 0.119 0.881 49 H 0.098 0.902 50 H 0.100 0.900 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 26.287 -20.674 -6.411 34.052 hybrid contribution -1.117 1.193 0.235 1.651 sum 25.170 -19.481 -6.176 32.422 Atomic orbital electron populations 1.69884 1.07135 1.26819 1.59464 1.25518 0.96174 1.01309 1.02331 0.85366 0.78356 0.79310 0.78478 1.19387 1.22162 1.18301 1.18916 0.82320 0.93281 1.41717 0.93276 1.42639 1.02582 1.03536 1.90507 1.20532 0.90313 0.86903 0.95660 0.96836 1.22004 1.00076 0.97897 0.96533 1.21962 0.95471 0.96316 1.02853 1.22610 0.98003 1.00937 0.81732 1.48019 1.50914 1.24438 1.09382 1.21552 0.78182 0.87785 0.82726 1.90652 1.60908 1.65474 1.29637 1.20173 0.91217 0.83800 0.93971 1.45099 1.10557 1.49870 1.32065 1.16209 0.81747 0.79175 0.83068 1.42807 1.15857 1.55688 1.27130 1.91055 1.75688 1.57106 1.27503 1.21688 1.00874 0.98315 0.94509 1.21447 0.97159 0.94603 1.01159 1.21591 0.95704 1.02037 0.96405 1.21551 1.01890 0.93943 0.97214 1.22023 0.91136 1.01091 1.01726 1.21586 0.91548 0.87157 1.00737 0.93191 0.80066 0.94041 0.91166 0.87061 0.92601 0.89084 0.85525 0.73692 0.75199 0.75107 0.92124 0.93786 0.91386 0.92186 0.89849 0.92242 0.89650 0.88630 0.88122 0.90234 0.90030 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.33 13.97 21.65 0.30 -65.03 16 2 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 3 Si 0.96 47.50 27.74 68.60 1.90 49.40 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 6 H -0.26 -11.87 6.52 99.48 0.65 -11.23 16 7 C -0.23 -14.04 10.41 84.03 0.88 -13.17 16 8 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 9 N -0.75 -37.72 4.93 -322.56 -1.59 -39.31 16 10 C 0.17 7.39 2.92 45.07 0.13 7.52 16 11 H 0.01 0.68 8.08 -2.39 -0.02 0.66 16 12 C -0.13 -4.10 5.47 30.62 0.17 -3.93 16 13 C -0.13 -2.69 6.05 30.67 0.19 -2.50 16 14 C 0.09 1.57 4.67 86.36 0.40 1.97 16 15 N -0.60 -17.44 2.95 -818.91 -2.42 -19.85 16 16 C 0.51 16.49 5.06 87.66 0.44 16.93 16 17 O -0.59 -25.69 15.44 -3.04 -0.05 -25.74 16 18 C 0.20 4.08 0.25 2.86 0.00 4.08 16 19 N -0.71 -10.43 1.89 -441.44 -0.84 -11.27 16 20 C 0.70 15.93 6.74 179.06 1.21 17.14 16 21 N -0.85 -11.45 8.22 -184.75 -1.52 -12.97 16 22 O -0.63 -23.83 14.45 -4.00 -0.06 -23.89 16 23 C -0.11 -2.82 4.00 30.59 0.12 -2.70 16 24 C -0.11 -1.61 5.76 30.59 0.18 -1.43 16 25 C -0.12 -1.04 5.92 30.59 0.18 -0.86 16 26 C -0.11 -0.52 5.75 30.59 0.18 -0.35 16 27 C -0.12 -1.35 4.52 30.59 0.14 -1.21 16 28 C 0.11 4.27 5.88 86.36 0.51 4.77 16 29 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 30 H 0.37 17.52 5.66 -92.71 -0.52 16.99 16 31 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.34 6.22 -2.39 -0.01 1.32 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.13 1.31 3.07 -2.38 -0.01 1.31 16 37 H 0.42 1.96 6.35 -92.70 -0.59 1.37 16 38 H 0.42 1.73 8.85 -92.71 -0.82 0.91 16 39 H 0.42 6.34 8.93 -92.71 -0.83 5.51 16 40 H 0.06 1.65 7.93 -2.38 -0.02 1.63 16 41 H 0.04 1.50 6.33 -2.39 -0.02 1.49 16 42 H 0.07 0.94 7.61 -2.39 -0.02 0.92 16 43 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.08 0.07 6.78 -2.38 -0.02 0.05 16 47 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 48 H 0.10 0.70 6.24 -2.39 -0.01 0.68 16 49 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 50 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 51 H 0.05 2.31 7.05 -2.39 -0.02 2.30 16 Total: -1.00 -95.88 376.10 -0.90 -96.79 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: -1.83 Total: 28.93 kcal Atomic # 6 Polarization: 17.75 SS G_CDS: 5.18 Total: 22.94 kcal Atomic # 7 Polarization: -142.38 SS G_CDS: -6.06 Total: -148.43 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -0.10 Total: -49.63 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 1.90 Total: 49.40 kcal Total: -95.88 -0.90 -96.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209952292.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.380 kcal (2) G-P(sol) polarization free energy of solvation -95.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds