Wall clock time and date at job start Tue Mar 31 2020 21:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00122 * 2 1 4 4 C 1.52995 * 109.47449 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.54239 * 300.00230 * 4 3 2 6 6 O 1.21280 * 120.00056 * 244.72525 * 5 4 3 7 7 N 1.34773 * 119.99679 * 64.72727 * 5 4 3 8 8 C 1.47809 * 135.01743 * 5.15673 * 7 5 4 9 9 C 1.54652 * 85.79217 * 153.82925 * 8 7 5 10 10 H 1.09000 * 114.43799 * 140.42852 * 9 8 7 11 11 C 1.53016 * 110.83496 * 270.23019 * 9 8 7 12 12 C 1.53100 * 109.44319 * 143.88998 * 11 9 8 13 13 N 1.46612 * 108.01194 * 301.02318 * 12 11 9 14 14 C 1.36935 * 119.89470 * 237.30973 * 13 12 11 15 15 H 1.08000 * 119.99698 * 25.44525 * 14 13 12 16 16 C 1.38815 * 120.00300 * 205.45049 * 14 13 12 17 17 N 1.31614 * 119.99694 * 15.91851 * 16 14 13 18 18 Si 1.86794 * 119.99854 * 196.19875 * 16 14 13 19 19 H 1.48505 * 109.46959 * 179.71881 * 18 16 14 20 20 H 1.48495 * 109.47380 * 299.72076 * 18 16 14 21 21 H 1.48500 * 109.47349 * 59.72255 * 18 16 14 22 22 C 1.45682 * 120.21661 * 57.58327 * 13 12 11 23 23 C 1.46823 * 135.00976 * 185.18880 * 7 5 4 24 24 H 1.09004 * 111.56443 * 94.45922 * 23 7 5 25 25 C 1.53182 * 109.54561 * 60.17866 * 4 3 2 26 26 C 1.53279 * 109.06688 * 176.85513 * 25 4 3 27 27 O 1.42908 * 109.46043 * 302.44524 * 26 25 4 28 28 C 1.42904 * 114.09576 * 61.15883 * 27 26 25 29 29 C 1.53095 * 109.41288 * 298.84230 * 28 27 26 30 30 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47009 * 299.99906 * 1 2 3 32 32 H 1.09002 * 109.47164 * 59.99791 * 1 2 3 33 33 H 1.09007 * 109.46744 * 60.00122 * 3 2 1 34 34 H 1.09005 * 109.47449 * 300.00192 * 3 2 1 35 35 H 1.08999 * 113.81564 * 39.60926 * 8 7 5 36 36 H 1.09000 * 113.92766 * 268.05872 * 8 7 5 37 37 H 1.09000 * 109.47430 * 23.90048 * 11 9 8 38 38 H 1.09003 * 109.47898 * 263.88173 * 11 9 8 39 39 H 1.09003 * 109.75078 * 181.39652 * 12 11 9 40 40 H 1.08998 * 109.79882 * 60.68235 * 12 11 9 41 41 H 0.97007 * 119.99691 * 180.02562 * 17 16 14 42 42 H 1.09008 * 108.71234 * 81.48896 * 22 13 12 43 43 H 1.09000 * 108.71720 * 199.50753 * 22 13 12 44 44 H 1.09008 * 109.51899 * 296.84340 * 25 4 3 45 45 H 1.08996 * 109.51712 * 57.02964 * 25 4 3 46 46 H 1.08996 * 109.45847 * 182.45009 * 26 25 4 47 47 H 1.09000 * 109.46884 * 62.44604 * 26 25 4 48 48 H 1.09001 * 109.47752 * 178.86098 * 28 27 26 49 49 H 1.09001 * 109.49048 * 58.82944 * 28 27 26 50 50 H 1.08997 * 109.52187 * 297.70120 * 29 28 27 51 51 H 1.09002 * 109.57129 * 177.55088 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9824 0.4367 1.2290 6 8 4.6545 0.9970 2.0687 7 7 3.6352 -0.8549 1.3954 8 6 2.9329 -1.8629 0.5735 9 6 3.7343 -2.9118 1.3794 10 1 3.1684 -3.8046 1.6455 11 6 5.0691 -3.2186 0.6971 12 6 6.1436 -3.4540 1.7620 13 7 6.2385 -2.2446 2.5853 14 6 7.4360 -1.5906 2.7018 15 1 8.1778 -1.6794 1.9220 16 6 7.6964 -0.8136 3.8223 17 7 6.9537 -0.9446 4.9009 18 14 9.0959 0.4233 3.7963 19 1 9.1601 1.1256 5.1032 20 1 10.3779 -0.2848 3.5513 21 1 8.8621 1.4127 2.7138 22 6 5.0646 -1.7397 3.2847 23 6 3.7974 -1.8438 2.4685 24 1 2.9218 -1.8787 3.1168 25 6 3.9891 0.4288 -1.2534 26 6 5.5209 0.3827 -1.2830 27 8 6.0379 1.7147 -1.2542 28 6 5.6836 2.4528 -0.0829 29 6 4.1602 2.5832 -0.0051 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6885 1.8463 0.8901 34 1 1.6886 1.8464 -0.8900 35 1 3.1934 -1.8274 -0.4843 36 1 1.8574 -1.9028 0.7464 37 1 5.3584 -2.3759 0.0691 38 1 4.9657 -4.1121 0.0814 39 1 7.1023 -3.6487 1.2813 40 1 5.8652 -4.3034 2.3858 41 1 7.1354 -0.4013 5.6838 42 1 4.9375 -2.3050 4.2080 43 1 5.2320 -0.6930 3.5387 44 1 3.5924 -0.5862 -1.2299 45 1 3.6232 0.9435 -2.1417 46 1 5.8516 -0.1158 -2.1941 47 1 5.8847 -0.1673 -0.4151 48 1 6.1315 3.4455 -0.1296 49 1 6.0494 1.9301 0.8009 50 1 3.7978 3.1413 -0.8683 51 1 3.8849 3.1080 0.9097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221602705.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:33 Heat of formation + Delta-G solvation = -48.654308 kcal Electronic energy + Delta-G solvation = -34059.163171 eV Core-core repulsion = 29961.402582 eV Total energy + Delta-G solvation = -4097.760589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.95319 -39.26906 -37.77832 -37.00259 -35.09304 -33.94503 -32.05922 -30.98175 -30.08181 -28.80636 -28.15031 -26.82541 -26.02893 -23.89483 -23.67820 -23.23618 -22.52251 -21.42942 -20.73693 -18.92792 -17.60021 -16.75660 -16.54773 -16.41372 -16.07803 -15.74107 -15.67616 -15.36310 -15.00444 -14.64325 -14.25793 -14.13803 -13.63216 -13.57023 -13.36011 -13.18595 -13.13466 -12.72101 -12.46890 -12.21322 -12.08898 -12.00552 -11.88735 -11.66913 -11.43193 -11.34914 -11.11077 -10.92905 -10.58808 -10.53419 -10.41945 -10.35112 -10.17807 -10.11387 -9.81762 -9.77162 -9.72910 -9.42616 -9.23252 -8.67157 -8.21419 -7.87099 -6.52669 -5.60335 -3.01181 3.22086 3.42862 3.51425 3.56894 3.59258 3.61402 4.17472 4.58243 4.66088 4.71203 4.80150 4.91347 5.02932 5.12031 5.13702 5.23289 5.26224 5.34029 5.37526 5.45516 5.49489 5.53658 5.62291 5.64614 5.67319 5.73870 5.77998 5.86962 5.91802 5.96275 6.05191 6.13356 6.17088 6.22810 6.25711 6.33904 6.43872 6.45977 6.51170 6.63011 6.68766 6.86597 6.95167 7.07126 7.49386 7.57687 7.83193 8.00203 8.49494 8.63082 8.90504 9.41508 10.06190 10.54729 11.47828 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011550 B = 0.006133 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.632651 B = 4564.363131 C = 5660.603229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.376 6.376 3 C 0.077 3.923 4 C -0.074 4.074 5 C 0.546 3.454 6 O -0.520 6.520 7 N -0.613 5.613 8 C 0.117 3.883 9 C -0.119 4.119 10 H 0.082 0.918 11 C -0.116 4.116 12 C 0.147 3.853 13 N -0.582 5.582 14 C -0.251 4.251 15 H 0.061 0.939 16 C 0.013 3.987 17 N -0.903 5.903 18 Si 0.898 3.102 19 H -0.292 1.292 20 H -0.286 1.286 21 H -0.283 1.283 22 C 0.168 3.832 23 C 0.125 3.875 24 H 0.067 0.933 25 C -0.145 4.145 26 C 0.056 3.944 27 O -0.386 6.386 28 C 0.052 3.948 29 C -0.125 4.125 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.018 0.982 41 H 0.251 0.749 42 H 0.028 0.972 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.090 0.910 47 H 0.064 0.936 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.071 0.929 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.539 0.717 -13.043 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.295 6.295 3 C 0.000 4.000 4 C -0.077 4.077 5 C 0.333 3.667 6 O -0.396 6.396 7 N -0.348 5.348 8 C -0.006 4.006 9 C -0.138 4.138 10 H 0.100 0.900 11 C -0.155 4.155 12 C 0.020 3.980 13 N -0.305 5.305 14 C -0.380 4.380 15 H 0.078 0.922 16 C -0.186 4.186 17 N -0.548 5.548 18 Si 0.728 3.272 19 H -0.218 1.218 20 H -0.212 1.212 21 H -0.209 1.209 22 C 0.042 3.958 23 C 0.021 3.979 24 H 0.085 0.915 25 C -0.182 4.182 26 C -0.021 4.021 27 O -0.304 6.304 28 C -0.025 4.025 29 C -0.163 4.163 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.061 0.939 42 H 0.045 0.955 43 H 0.120 0.880 44 H 0.110 0.890 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.082 0.918 48 H 0.107 0.893 49 H 0.101 0.899 50 H 0.090 0.910 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.871 1.255 -12.574 18.764 hybrid contribution -0.054 0.939 0.241 0.971 sum -13.925 2.194 -12.334 18.731 Atomic orbital electron populations 1.22693 0.81516 1.02689 0.99774 1.88076 1.19231 1.26864 1.95338 1.22462 0.91656 0.85372 1.00497 1.20917 0.94229 0.97011 0.95584 1.19549 0.80075 0.80093 0.86961 1.90744 1.37512 1.66560 1.44802 1.49618 1.55971 1.08697 1.20494 1.23569 0.96580 0.84447 0.95969 1.22954 0.97280 0.96528 0.97070 0.89995 1.21854 0.94906 1.00108 0.98648 1.20739 0.95838 0.89635 0.91755 1.43440 1.05988 1.25093 1.55949 1.19003 0.93574 1.24609 1.00829 0.92154 1.24881 0.98081 1.00847 0.94762 1.70011 1.41388 1.41005 1.02357 0.86444 0.81891 0.82097 0.76770 1.21807 1.21236 1.20948 1.20148 0.82306 1.02633 0.90685 1.22675 1.00810 0.83588 0.90840 0.91483 1.22421 0.97576 1.02207 0.96019 1.22646 0.92094 0.84588 1.02758 1.87843 1.74879 1.25504 1.42212 1.22765 0.93104 0.96998 0.89616 1.21945 0.97575 0.94028 1.02764 0.89577 0.94247 0.94288 0.92986 0.92588 0.90741 0.90030 0.92182 0.92937 0.92729 0.96386 0.93863 0.95464 0.88005 0.88968 0.90985 0.89171 0.91817 0.89288 0.89896 0.91017 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.93 101.05 1.10 1.35 16 2 O -0.38 -4.27 5.48 -35.23 -0.19 -4.46 16 3 C 0.08 0.92 4.80 37.16 0.18 1.10 16 4 C -0.07 -1.09 0.50 -155.48 -0.08 -1.17 16 5 C 0.55 10.47 5.24 -10.98 -0.06 10.41 16 6 O -0.52 -12.53 13.10 5.56 0.07 -12.46 16 7 N -0.61 -10.93 3.07 -173.81 -0.53 -11.46 16 8 C 0.12 1.61 5.00 -3.00 -0.02 1.59 16 9 C -0.12 -1.84 4.39 -89.97 -0.40 -2.24 16 10 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 11 C -0.12 -1.92 5.66 -26.67 -0.15 -2.07 16 12 C 0.15 3.05 6.47 -3.93 -0.03 3.02 16 13 N -0.58 -14.82 3.01 -174.88 -0.53 -15.34 16 14 C -0.25 -7.17 9.53 -15.06 -0.14 -7.31 16 15 H 0.06 1.72 7.85 -52.49 -0.41 1.30 16 16 C 0.01 0.38 4.91 -17.43 -0.09 0.30 16 17 N -0.90 -27.59 11.04 55.49 0.61 -26.97 16 18 Si 0.90 23.56 29.58 -169.99 -5.03 18.53 16 19 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.28 -7.53 7.11 56.52 0.40 -7.12 16 22 C 0.17 4.20 4.61 -5.44 -0.03 4.17 16 23 C 0.12 2.41 4.24 -69.43 -0.29 2.11 16 24 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 25 C -0.14 -1.96 4.63 -26.49 -0.12 -2.08 16 26 C 0.06 0.89 6.62 37.30 0.25 1.14 16 27 O -0.39 -6.76 10.77 -35.23 -0.38 -7.14 16 28 C 0.05 0.89 6.56 37.21 0.24 1.13 16 29 C -0.13 -1.82 4.56 -26.59 -0.12 -1.94 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.96 5.19 -51.93 -0.27 0.69 16 36 H 0.08 1.00 6.71 -51.93 -0.35 0.65 16 37 H 0.06 1.08 7.40 -51.93 -0.38 0.70 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 1.12 7.89 -51.93 -0.41 0.72 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.03 0.74 7.97 -51.92 -0.41 0.33 16 43 H 0.10 2.98 4.90 -51.93 -0.25 2.72 16 44 H 0.09 1.20 4.17 -51.92 -0.22 0.98 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.06 1.25 7.08 -51.93 -0.37 0.89 16 48 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 49 H 0.08 1.80 5.98 -51.93 -0.31 1.49 16 50 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 51 H 0.08 1.20 7.96 -51.93 -0.41 0.79 16 LS Contribution 373.28 15.07 5.63 5.63 Total: -1.00 -33.93 373.28 -8.52 -42.45 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -8.43 Total: 1.71 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 0.26 Total: 9.51 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.45 Total: -53.78 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.50 Total: -24.05 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.03 Total: 18.53 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.93 -8.52 -42.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221602705.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.201 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds