Wall clock time and date at job start Tue Mar 31 2020 21:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00122 * 2 1 4 4 C 1.52995 * 109.47449 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.54239 * 300.00230 * 4 3 2 6 6 O 1.21280 * 120.00056 * 244.72525 * 5 4 3 7 7 N 1.34773 * 119.99679 * 64.72727 * 5 4 3 8 8 C 1.47809 * 135.01743 * 5.15673 * 7 5 4 9 9 C 1.54652 * 85.79217 * 153.82925 * 8 7 5 10 10 H 1.09000 * 114.43799 * 140.42852 * 9 8 7 11 11 C 1.53016 * 110.83496 * 270.23019 * 9 8 7 12 12 C 1.53100 * 109.44319 * 143.88998 * 11 9 8 13 13 N 1.46612 * 108.01194 * 301.02318 * 12 11 9 14 14 C 1.36935 * 119.89470 * 237.30973 * 13 12 11 15 15 H 1.08000 * 119.99698 * 25.44525 * 14 13 12 16 16 C 1.38815 * 120.00300 * 205.45049 * 14 13 12 17 17 N 1.31614 * 119.99694 * 15.91851 * 16 14 13 18 18 Si 1.86794 * 119.99854 * 196.19875 * 16 14 13 19 19 H 1.48505 * 109.46959 * 179.71881 * 18 16 14 20 20 H 1.48495 * 109.47380 * 299.72076 * 18 16 14 21 21 H 1.48500 * 109.47349 * 59.72255 * 18 16 14 22 22 C 1.45682 * 120.21661 * 57.58327 * 13 12 11 23 23 C 1.46823 * 135.00976 * 185.18880 * 7 5 4 24 24 H 1.09004 * 111.56443 * 94.45922 * 23 7 5 25 25 C 1.53182 * 109.54561 * 60.17866 * 4 3 2 26 26 C 1.53279 * 109.06688 * 176.85513 * 25 4 3 27 27 O 1.42908 * 109.46043 * 302.44524 * 26 25 4 28 28 C 1.42904 * 114.09576 * 61.15883 * 27 26 25 29 29 C 1.53095 * 109.41288 * 298.84230 * 28 27 26 30 30 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47009 * 299.99906 * 1 2 3 32 32 H 1.09002 * 109.47164 * 59.99791 * 1 2 3 33 33 H 1.09007 * 109.46744 * 60.00122 * 3 2 1 34 34 H 1.09005 * 109.47449 * 300.00192 * 3 2 1 35 35 H 1.08999 * 113.81564 * 39.60926 * 8 7 5 36 36 H 1.09000 * 113.92766 * 268.05872 * 8 7 5 37 37 H 1.09000 * 109.47430 * 23.90048 * 11 9 8 38 38 H 1.09003 * 109.47898 * 263.88173 * 11 9 8 39 39 H 1.09003 * 109.75078 * 181.39652 * 12 11 9 40 40 H 1.08998 * 109.79882 * 60.68235 * 12 11 9 41 41 H 0.97007 * 119.99691 * 180.02562 * 17 16 14 42 42 H 1.09008 * 108.71234 * 81.48896 * 22 13 12 43 43 H 1.09000 * 108.71720 * 199.50753 * 22 13 12 44 44 H 1.09008 * 109.51899 * 296.84340 * 25 4 3 45 45 H 1.08996 * 109.51712 * 57.02964 * 25 4 3 46 46 H 1.08996 * 109.45847 * 182.45009 * 26 25 4 47 47 H 1.09000 * 109.46884 * 62.44604 * 26 25 4 48 48 H 1.09001 * 109.47752 * 178.86098 * 28 27 26 49 49 H 1.09001 * 109.49048 * 58.82944 * 28 27 26 50 50 H 1.08997 * 109.52187 * 297.70120 * 29 28 27 51 51 H 1.09002 * 109.57129 * 177.55088 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9824 0.4367 1.2290 6 8 4.6545 0.9970 2.0687 7 7 3.6352 -0.8549 1.3954 8 6 2.9329 -1.8629 0.5735 9 6 3.7343 -2.9118 1.3794 10 1 3.1684 -3.8046 1.6455 11 6 5.0691 -3.2186 0.6971 12 6 6.1436 -3.4540 1.7620 13 7 6.2385 -2.2446 2.5853 14 6 7.4360 -1.5906 2.7018 15 1 8.1778 -1.6794 1.9220 16 6 7.6964 -0.8136 3.8223 17 7 6.9537 -0.9446 4.9009 18 14 9.0959 0.4233 3.7963 19 1 9.1601 1.1256 5.1032 20 1 10.3779 -0.2848 3.5513 21 1 8.8621 1.4127 2.7138 22 6 5.0646 -1.7397 3.2847 23 6 3.7974 -1.8438 2.4685 24 1 2.9218 -1.8787 3.1168 25 6 3.9891 0.4288 -1.2534 26 6 5.5209 0.3827 -1.2830 27 8 6.0379 1.7147 -1.2542 28 6 5.6836 2.4528 -0.0829 29 6 4.1602 2.5832 -0.0051 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6885 1.8463 0.8901 34 1 1.6886 1.8464 -0.8900 35 1 3.1934 -1.8274 -0.4843 36 1 1.8574 -1.9028 0.7464 37 1 5.3584 -2.3759 0.0691 38 1 4.9657 -4.1121 0.0814 39 1 7.1023 -3.6487 1.2813 40 1 5.8652 -4.3034 2.3858 41 1 7.1354 -0.4013 5.6838 42 1 4.9375 -2.3050 4.2080 43 1 5.2320 -0.6930 3.5387 44 1 3.5924 -0.5862 -1.2299 45 1 3.6232 0.9435 -2.1417 46 1 5.8516 -0.1158 -2.1941 47 1 5.8847 -0.1673 -0.4151 48 1 6.1315 3.4455 -0.1296 49 1 6.0494 1.9301 0.8009 50 1 3.7978 3.1413 -0.8683 51 1 3.8849 3.1080 0.9097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221602705.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:32 Heat of formation + Delta-G solvation = -72.980849 kcal Electronic energy + Delta-G solvation = -34060.218049 eV Core-core repulsion = 29961.402582 eV Total energy + Delta-G solvation = -4098.815467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.27644 -40.62666 -38.69126 -38.46953 -36.96558 -35.15319 -33.93944 -32.23840 -31.90144 -30.35420 -29.21239 -28.42623 -26.85363 -25.67945 -25.12513 -24.46697 -23.84566 -22.86554 -22.30097 -20.32344 -19.38930 -18.23110 -17.64711 -17.58469 -17.37271 -17.16248 -16.92703 -16.74922 -16.31876 -16.12531 -15.86109 -15.61832 -15.09242 -15.00658 -14.87327 -14.66088 -14.48106 -14.18369 -13.88973 -13.59838 -13.41510 -13.18052 -13.12187 -13.07465 -12.87610 -12.73903 -12.65758 -12.43709 -12.31625 -12.18517 -12.12390 -11.92567 -11.68583 -11.59596 -11.44582 -11.36088 -10.96968 -10.66062 -10.55132 -10.51695 -10.04505 -9.30875 -8.65651 -7.85442 -5.27390 1.31842 1.39369 1.43171 1.87052 2.09650 2.47136 2.70202 2.89144 3.30528 3.44657 3.56269 3.58342 3.73585 3.79826 3.87447 4.00724 4.04840 4.26363 4.30739 4.33836 4.40786 4.43575 4.53134 4.54143 4.61799 4.65975 4.67541 4.70226 4.74258 4.76590 4.77673 4.82171 4.86346 4.91769 4.98652 5.00577 5.04522 5.08716 5.12950 5.16687 5.27646 5.39201 5.49588 5.56991 5.74806 5.84361 6.16847 6.21201 6.39811 7.11489 7.20287 7.48278 7.97465 8.36789 9.18750 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011550 B = 0.006133 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.632651 B = 4564.363131 C = 5660.603229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.391 6.391 3 C 0.085 3.915 4 C -0.071 4.071 5 C 0.533 3.467 6 O -0.586 6.586 7 N -0.617 5.617 8 C 0.136 3.864 9 C -0.109 4.109 10 H 0.119 0.881 11 C -0.104 4.104 12 C 0.138 3.862 13 N -0.597 5.597 14 C -0.250 4.250 15 H 0.056 0.944 16 C -0.041 4.041 17 N -0.931 5.931 18 Si 0.948 3.052 19 H -0.293 1.293 20 H -0.268 1.268 21 H -0.295 1.295 22 C 0.185 3.815 23 C 0.110 3.890 24 H 0.079 0.921 25 C -0.132 4.132 26 C 0.054 3.946 27 O -0.394 6.394 28 C 0.052 3.948 29 C -0.119 4.119 30 H 0.103 0.897 31 H 0.033 0.967 32 H 0.057 0.943 33 H 0.041 0.959 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.044 0.956 38 H 0.098 0.902 39 H 0.049 0.951 40 H 0.025 0.975 41 H 0.243 0.757 42 H -0.011 1.011 43 H 0.050 0.950 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.116 0.884 47 H 0.015 0.985 48 H 0.103 0.897 49 H 0.026 0.974 50 H 0.110 0.890 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.535 -0.292 -17.078 24.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.310 6.310 3 C 0.008 3.992 4 C -0.074 4.074 5 C 0.323 3.677 6 O -0.466 6.466 7 N -0.350 5.350 8 C 0.015 3.985 9 C -0.128 4.128 10 H 0.137 0.863 11 C -0.143 4.143 12 C 0.013 3.987 13 N -0.320 5.320 14 C -0.381 4.381 15 H 0.074 0.926 16 C -0.236 4.236 17 N -0.578 5.578 18 Si 0.778 3.222 19 H -0.219 1.219 20 H -0.193 1.193 21 H -0.222 1.222 22 C 0.059 3.941 23 C 0.005 3.995 24 H 0.097 0.903 25 C -0.169 4.169 26 C -0.023 4.023 27 O -0.313 6.313 28 C -0.025 4.025 29 C -0.157 4.157 30 H 0.122 0.878 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.063 0.937 38 H 0.116 0.884 39 H 0.068 0.932 40 H 0.043 0.957 41 H 0.052 0.948 42 H 0.007 0.993 43 H 0.069 0.931 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.134 0.866 47 H 0.033 0.967 48 H 0.122 0.878 49 H 0.045 0.955 50 H 0.128 0.872 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.896 0.185 -16.663 23.731 hybrid contribution 0.915 1.180 1.505 2.120 sum -15.981 1.364 -15.157 22.068 Atomic orbital electron populations 1.22883 0.79568 1.04106 1.00418 1.87993 1.21174 1.26352 1.95501 1.22349 0.89098 0.86082 1.01630 1.20942 0.96596 0.96193 0.93670 1.20487 0.78986 0.80411 0.87774 1.90727 1.40332 1.68103 1.47484 1.49777 1.55892 1.08697 1.20639 1.23701 0.97429 0.81138 0.96183 1.22979 0.97448 0.97383 0.95019 0.86299 1.21730 0.93705 1.01549 0.97309 1.20985 0.97580 0.87825 0.92282 1.43651 1.05225 1.26752 1.56413 1.19256 0.94557 1.24246 1.00038 0.92625 1.25514 1.00513 1.02740 0.94865 1.70170 1.43049 1.41896 1.02697 0.85620 0.80504 0.80076 0.76013 1.21941 1.19309 1.22209 1.19719 0.84869 0.98773 0.90772 1.22582 0.97807 0.86954 0.92132 0.90287 1.22377 0.95074 1.03108 0.96334 1.22740 0.94325 0.83471 1.01748 1.87819 1.75687 1.26159 1.41651 1.22663 0.95525 0.96785 0.87479 1.21909 0.95250 0.94705 1.03855 0.87817 0.94780 0.92487 0.94084 0.89163 0.88773 0.87221 0.93729 0.88369 0.93210 0.95718 0.94781 0.99328 0.93128 0.87837 0.87683 0.86581 0.96695 0.87848 0.95537 0.87180 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.93 113.37 1.24 1.54 16 2 O -0.39 -7.08 5.48 -148.98 -0.82 -7.90 16 3 C 0.09 1.72 4.80 71.98 0.35 2.07 16 4 C -0.07 -1.96 0.50 -52.81 -0.03 -1.98 16 5 C 0.53 20.87 5.24 87.66 0.46 21.33 16 6 O -0.59 -30.47 13.10 -3.03 -0.04 -30.51 16 7 N -0.62 -21.55 3.07 -822.19 -2.53 -24.07 16 8 C 0.14 3.18 5.00 86.34 0.43 3.61 16 9 C -0.11 -3.03 4.39 -10.31 -0.05 -3.07 16 10 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 11 C -0.10 -3.18 5.66 30.63 0.17 -3.00 16 12 C 0.14 5.71 6.47 86.39 0.56 6.27 16 13 N -0.60 -31.76 3.01 -707.20 -2.13 -33.89 16 14 C -0.25 -15.11 9.53 84.03 0.80 -14.31 16 15 H 0.06 3.33 7.85 -2.91 -0.02 3.30 16 16 C -0.04 -2.56 4.91 84.86 0.42 -2.14 16 17 N -0.93 -60.91 11.04 21.65 0.24 -60.68 16 18 Si 0.95 51.33 29.58 68.60 2.03 53.36 16 19 H -0.29 -15.79 7.11 99.48 0.71 -15.08 16 20 H -0.27 -13.54 7.11 99.48 0.71 -12.83 16 21 H -0.29 -16.34 7.11 99.48 0.71 -15.63 16 22 C 0.19 9.79 4.61 85.91 0.40 10.18 16 23 C 0.11 4.25 4.24 43.84 0.19 4.43 16 24 H 0.08 2.84 8.14 -2.38 -0.02 2.82 16 25 C -0.13 -3.10 4.63 30.75 0.14 -2.96 16 26 C 0.05 1.66 6.62 72.08 0.48 2.13 16 27 O -0.39 -13.66 10.77 -148.98 -1.60 -15.27 16 28 C 0.05 1.86 6.56 72.01 0.47 2.33 16 29 C -0.12 -3.37 4.56 30.68 0.14 -3.23 16 30 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.09 1.90 5.19 -2.39 -0.01 1.89 16 36 H 0.11 2.06 6.71 -2.39 -0.02 2.05 16 37 H 0.04 1.52 7.40 -2.39 -0.02 1.50 16 38 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.05 2.06 7.89 -2.39 -0.02 2.04 16 40 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.24 15.64 8.31 -92.70 -0.77 14.87 16 42 H -0.01 -0.64 7.97 -2.38 -0.02 -0.66 16 43 H 0.05 3.20 4.90 -2.39 -0.01 3.19 16 44 H 0.10 2.20 4.17 -2.38 -0.01 2.19 16 45 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 47 H 0.01 0.60 7.08 -2.39 -0.02 0.58 16 48 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 49 H 0.03 1.25 5.98 -2.39 -0.01 1.24 16 50 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 51 H 0.07 2.11 7.96 -2.39 -0.02 2.09 16 Total: -1.00 -84.73 373.28 2.23 -82.50 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.92 Total: 13.25 kcal Atomic # 6 Polarization: 17.04 SS G_CDS: 6.17 Total: 23.21 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -4.42 Total: -118.64 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: -2.46 Total: -53.68 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.03 Total: 53.36 kcal Total: -84.73 2.23 -82.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221602705.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.515 kcal (2) G-P(sol) polarization free energy of solvation -84.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds