Wall clock time and date at job start Tue Mar 31 2020 21:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00146 * 2 1 4 4 C 1.53001 * 109.47382 * 179.97438 * 3 2 1 5 5 C 1.50707 * 110.74974 * 64.85716 * 4 3 2 6 6 O 1.21278 * 120.00046 * 246.52810 * 5 4 3 7 7 N 1.34771 * 119.99979 * 66.52989 * 5 4 3 8 8 C 1.47154 * 121.21713 * 355.26708 * 7 5 4 9 9 C 1.52842 * 107.97987 * 122.73722 * 8 7 5 10 10 C 1.53089 * 110.58032 * 57.34342 * 9 8 7 11 11 H 1.08999 * 112.49816 * 70.55275 * 10 9 8 12 12 C 1.56028 * 106.38912 * 195.43529 * 10 9 8 13 13 C 1.54508 * 102.60983 * 78.36790 * 12 10 9 14 14 N 1.47437 * 107.14876 * 22.85583 * 13 12 10 15 15 C 1.36932 * 126.05866 * 181.63812 * 14 13 12 16 16 H 1.08006 * 119.99709 * 179.97438 * 15 14 13 17 17 C 1.38807 * 120.00054 * 359.97438 * 15 14 13 18 18 N 1.31614 * 120.00334 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99811 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47317 * 59.99732 * 19 17 15 21 21 H 1.48502 * 109.47104 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46887 * 299.99704 * 19 17 15 23 23 C 1.46476 * 107.87876 * 1.61557 * 14 13 12 24 24 H 1.09001 * 107.85530 * 89.63640 * 23 14 13 25 25 C 1.46763 * 121.21648 * 175.28973 * 7 5 4 26 26 C 1.55303 * 110.84929 * 188.32919 * 4 3 2 27 27 C 1.55502 * 100.69570 * 152.42118 * 26 4 3 28 28 O 1.43649 * 105.17811 * 323.57882 * 27 26 4 29 29 C 1.43241 * 109.96948 * 24.43751 * 28 27 26 30 30 H 1.09005 * 109.47066 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46895 * 300.00261 * 1 2 3 32 32 H 1.08997 * 109.47079 * 60.00519 * 1 2 3 33 33 H 1.08998 * 109.47074 * 59.99443 * 3 2 1 34 34 H 1.09000 * 109.46794 * 299.99556 * 3 2 1 35 35 H 1.08996 * 109.76109 * 3.11627 * 8 7 5 36 36 H 1.09001 * 109.80151 * 242.37931 * 8 7 5 37 37 H 1.08998 * 109.25061 * 297.05831 * 9 8 7 38 38 H 1.09003 * 109.22098 * 177.60500 * 9 8 7 39 39 H 1.08994 * 110.78012 * 196.64916 * 12 10 9 40 40 H 1.08993 * 110.77854 * 320.08982 * 12 10 9 41 41 H 1.09004 * 109.90063 * 142.23436 * 13 12 10 42 42 H 1.08996 * 109.90055 * 263.29673 * 13 12 10 43 43 H 0.96995 * 120.00207 * 180.02562 * 18 17 15 44 44 H 1.08996 * 109.22737 * 112.19303 * 25 7 5 45 45 H 1.08997 * 109.22707 * 352.82676 * 25 7 5 46 46 H 1.09001 * 111.12455 * 270.44684 * 26 4 3 47 47 H 1.09000 * 111.12342 * 34.60413 * 26 4 3 48 48 H 1.08999 * 110.27864 * 204.65202 * 27 26 4 49 49 H 1.08996 * 110.28913 * 82.51399 * 27 26 4 50 50 H 1.09003 * 109.82405 * 238.77316 * 29 28 27 51 51 H 1.08997 * 109.90495 * 117.84200 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.0210 0.5453 -1.2748 6 8 4.5422 -0.5493 -1.2443 7 7 3.8760 1.1901 -2.4494 8 6 3.1566 2.4711 -2.5325 9 6 4.1061 3.5074 -3.1330 10 6 4.6086 3.0464 -4.5036 11 1 3.8287 3.0736 -5.2645 12 6 5.8415 3.9402 -4.8439 13 6 6.9652 3.3011 -3.9976 14 7 6.5668 1.9076 -3.7271 15 6 7.2688 0.9989 -2.9811 16 1 6.8836 -0.0009 -2.8454 17 6 8.4754 1.3628 -2.3994 18 7 8.9451 2.5811 -2.5653 19 14 9.4334 0.1229 -1.3824 20 1 9.7811 -1.0476 -2.2275 21 1 10.6784 0.7544 -0.8760 22 1 8.6026 -0.3240 -0.2355 23 6 5.2866 1.6678 -4.3974 24 1 5.4988 1.3096 -5.4048 25 6 4.4294 0.6400 -3.6924 26 6 4.1998 2.5726 0.2109 27 6 5.5390 2.1531 0.8807 28 8 5.2057 1.0368 1.7212 29 6 4.0234 0.3924 1.2326 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8463 -0.8900 35 1 2.8495 2.7867 -1.5354 36 1 2.2797 2.3614 -3.1706 37 1 4.9570 3.6444 -2.4656 38 1 3.5794 4.4553 -3.2433 39 1 6.0781 3.8843 -5.9064 40 1 5.6670 4.9720 -4.5391 41 1 7.9030 3.3178 -4.5529 42 1 7.0792 3.8458 -3.0604 43 1 9.7884 2.8352 -2.1591 44 1 3.6115 0.3435 -4.3491 45 1 5.0365 -0.2346 -3.4589 46 1 4.3727 3.0737 -0.7415 47 1 3.6046 3.1959 0.8782 48 1 5.9347 2.9730 1.4800 49 1 6.2629 1.8534 0.1230 50 1 3.2536 0.3979 2.0043 51 1 4.2518 -0.6339 0.9455 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223214192.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:09 Heat of formation + Delta-G solvation = -73.337518 kcal Electronic energy + Delta-G solvation = -33828.668069 eV Core-core repulsion = 29729.837136 eV Total energy + Delta-G solvation = -4098.830934 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.92821 -39.03150 -37.67845 -37.44566 -35.17603 -33.08452 -32.82799 -31.09754 -29.48180 -29.08247 -28.41285 -27.07398 -25.32653 -24.81702 -24.24295 -22.60238 -22.20002 -21.81245 -20.00848 -19.36458 -18.20480 -17.10810 -16.54761 -16.47069 -16.32985 -15.85430 -15.52055 -15.11120 -14.78020 -14.72425 -14.49086 -14.26551 -13.97418 -13.83558 -13.40889 -13.14433 -13.00117 -12.68485 -12.63930 -12.39559 -12.03958 -11.82673 -11.58898 -11.45783 -11.39361 -11.33681 -11.20868 -10.97661 -10.84366 -10.78054 -10.72727 -10.62373 -10.11730 -9.91869 -9.87191 -9.79505 -9.66511 -9.49610 -9.19554 -9.06173 -8.51317 -8.11389 -6.76017 -5.63414 -2.95391 3.08504 3.34598 3.50678 3.52705 3.55154 3.63736 4.12945 4.43403 4.60182 4.65939 4.79897 4.89520 4.94776 5.08201 5.10609 5.15855 5.20827 5.24501 5.32449 5.37657 5.46726 5.47916 5.50698 5.51377 5.66713 5.68576 5.74553 5.80987 5.89228 5.99336 6.02401 6.06552 6.10254 6.22736 6.24612 6.28670 6.41653 6.42953 6.46228 6.61426 6.73034 6.89557 6.93077 7.09406 7.29844 7.60864 7.63958 7.89589 7.91815 8.30644 8.69851 9.30502 9.91040 10.55237 11.48403 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.006209 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.130595 B = 4508.772246 C = 5823.194075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.074 3.926 4 C -0.112 4.112 5 C 0.547 3.453 6 O -0.524 6.524 7 N -0.592 5.592 8 C 0.097 3.903 9 C -0.126 4.126 10 C -0.100 4.100 11 H 0.075 0.925 12 C -0.144 4.144 13 C 0.179 3.821 14 N -0.588 5.588 15 C -0.214 4.214 16 H 0.079 0.921 17 C -0.004 4.004 18 N -0.925 5.925 19 Si 0.898 3.102 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.153 3.847 24 H 0.027 0.973 25 C 0.116 3.884 26 C -0.151 4.151 27 C 0.052 3.948 28 O -0.383 6.383 29 C 0.079 3.921 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.040 0.960 42 H 0.045 0.955 43 H 0.250 0.750 44 H 0.053 0.947 45 H 0.095 0.905 46 H 0.105 0.895 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.081 0.919 50 H 0.070 0.930 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.050 4.509 1.921 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.003 4.003 4 C -0.116 4.116 5 C 0.334 3.666 6 O -0.399 6.399 7 N -0.325 5.325 8 C -0.026 4.026 9 C -0.164 4.164 10 C -0.120 4.120 11 H 0.093 0.907 12 C -0.182 4.182 13 C 0.054 3.946 14 N -0.313 5.313 15 C -0.343 4.343 16 H 0.097 0.903 17 C -0.199 4.199 18 N -0.573 5.573 19 Si 0.728 3.272 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.045 3.955 24 H 0.044 0.956 25 C -0.007 4.007 26 C -0.188 4.188 27 C -0.024 4.024 28 O -0.302 6.302 29 C 0.002 3.998 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.113 0.887 46 H 0.123 0.877 47 H 0.102 0.898 48 H 0.103 0.897 49 H 0.099 0.901 50 H 0.088 0.912 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.298 3.649 2.250 17.822 hybrid contribution 0.223 -0.123 0.242 0.351 sum -17.076 3.527 2.492 17.613 Atomic orbital electron populations 1.22745 0.80989 1.02913 0.99811 1.88000 1.19598 1.27011 1.95339 1.22705 0.90684 0.85614 1.01293 1.22310 0.94993 0.97897 0.96387 1.19525 0.78287 0.85157 0.83649 1.90665 1.43258 1.20275 1.85692 1.47649 1.55034 1.22149 1.07626 1.22008 0.94738 0.84568 1.01312 1.21912 0.99722 0.96813 0.97945 1.22346 0.96701 0.97097 0.95843 0.90658 1.23164 0.96851 0.98100 1.00077 1.21204 0.92699 0.84263 0.96387 1.44269 1.18104 1.09744 1.59222 1.18956 1.00241 0.92499 1.22568 0.90305 1.24643 0.97906 0.96563 1.00828 1.69937 1.21248 1.17233 1.48874 0.86385 0.79393 0.80560 0.80819 1.21329 1.21824 1.20554 1.20727 0.87576 0.92325 0.94917 0.95570 1.21385 0.96428 0.98728 0.84200 1.23718 0.97165 0.94387 1.03540 1.23531 0.96064 0.88568 0.94225 1.88361 1.44649 1.45150 1.52073 1.22973 0.87007 0.97734 0.92106 0.89513 0.94089 0.94084 0.92103 0.91751 0.89752 0.91866 0.89874 0.91965 0.92731 0.92325 0.94143 0.93733 0.93995 0.92898 0.88709 0.87716 0.89757 0.89674 0.90089 0.91169 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -5.08 10.15 -35.23 -0.36 -5.44 16 3 C 0.07 0.88 4.38 37.16 0.16 1.04 16 4 C -0.11 -1.74 0.34 -153.71 -0.05 -1.80 16 5 C 0.55 10.53 6.20 -10.98 -0.07 10.46 16 6 O -0.52 -12.40 14.92 5.56 0.08 -12.32 16 7 N -0.59 -10.18 2.94 -174.09 -0.51 -10.69 16 8 C 0.10 1.26 4.33 -3.77 -0.02 1.24 16 9 C -0.13 -1.77 4.69 -26.77 -0.13 -1.90 16 10 C -0.10 -1.56 3.68 -88.43 -0.33 -1.88 16 11 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 12 C -0.14 -2.46 6.33 -24.32 -0.15 -2.62 16 13 C 0.18 4.09 4.61 -2.74 -0.01 4.07 16 14 N -0.59 -14.03 3.20 -164.41 -0.53 -14.55 16 15 C -0.21 -5.88 9.70 -15.06 -0.15 -6.03 16 16 H 0.08 2.26 6.51 -52.48 -0.34 1.92 16 17 C 0.00 -0.11 5.49 -17.43 -0.10 -0.20 16 18 N -0.92 -26.72 10.38 55.49 0.58 -26.15 16 19 Si 0.90 23.48 29.55 -169.99 -5.02 18.45 16 20 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 21 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 22 H -0.28 -7.53 7.11 56.52 0.40 -7.13 16 23 C 0.15 2.95 2.97 -68.29 -0.20 2.75 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 25 C 0.12 2.15 5.67 -4.77 -0.03 2.12 16 26 C -0.15 -2.15 5.13 -24.18 -0.12 -2.27 16 27 C 0.05 0.94 7.62 38.49 0.29 1.23 16 28 O -0.38 -7.37 11.36 -35.23 -0.40 -7.77 16 29 C 0.08 1.35 6.56 37.88 0.25 1.60 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.58 8.07 -51.93 -0.42 0.16 16 34 H 0.06 0.67 5.32 -51.93 -0.28 0.39 16 35 H 0.08 0.95 3.23 -51.93 -0.17 0.78 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.45 5.63 -51.93 -0.29 1.16 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.90 7.97 -51.93 -0.41 0.49 16 41 H 0.04 1.05 7.57 -51.93 -0.39 0.66 16 42 H 0.04 1.12 7.05 -51.93 -0.37 0.76 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.09 2.10 5.57 -51.93 -0.29 1.81 16 46 H 0.10 1.54 4.05 -51.93 -0.21 1.33 16 47 H 0.08 0.92 7.99 -51.93 -0.41 0.51 16 48 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 49 H 0.08 1.82 8.14 -51.93 -0.42 1.39 16 50 H 0.07 1.02 7.82 -51.93 -0.41 0.62 16 51 H 0.09 1.77 6.77 -51.93 -0.35 1.41 16 LS Contribution 373.94 15.07 5.64 5.64 Total: -1.00 -33.54 373.94 -8.18 -41.72 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -8.13 Total: 1.88 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 0.47 Total: 9.23 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.46 Total: -51.39 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.67 Total: -25.53 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.02 Total: 18.45 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.54 -8.18 -41.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223214192.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.613 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds