Wall clock time and date at job start Tue Mar 31 2020 21:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00146 * 2 1 4 4 C 1.53001 * 109.47382 * 179.97438 * 3 2 1 5 5 C 1.50707 * 110.74974 * 64.85716 * 4 3 2 6 6 O 1.21278 * 120.00046 * 246.52810 * 5 4 3 7 7 N 1.34771 * 119.99979 * 66.52989 * 5 4 3 8 8 C 1.47154 * 121.21713 * 355.26708 * 7 5 4 9 9 C 1.52842 * 107.97987 * 122.73722 * 8 7 5 10 10 C 1.53089 * 110.58032 * 57.34342 * 9 8 7 11 11 H 1.08999 * 112.49816 * 70.55275 * 10 9 8 12 12 C 1.56028 * 106.38912 * 195.43529 * 10 9 8 13 13 C 1.54508 * 102.60983 * 78.36790 * 12 10 9 14 14 N 1.47437 * 107.14876 * 22.85583 * 13 12 10 15 15 C 1.36932 * 126.05866 * 181.63812 * 14 13 12 16 16 H 1.08006 * 119.99709 * 179.97438 * 15 14 13 17 17 C 1.38807 * 120.00054 * 359.97438 * 15 14 13 18 18 N 1.31614 * 120.00334 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99811 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47317 * 59.99732 * 19 17 15 21 21 H 1.48502 * 109.47104 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46887 * 299.99704 * 19 17 15 23 23 C 1.46476 * 107.87876 * 1.61557 * 14 13 12 24 24 H 1.09001 * 107.85530 * 89.63640 * 23 14 13 25 25 C 1.46763 * 121.21648 * 175.28973 * 7 5 4 26 26 C 1.55303 * 110.84929 * 188.32919 * 4 3 2 27 27 C 1.55502 * 100.69570 * 152.42118 * 26 4 3 28 28 O 1.43649 * 105.17811 * 323.57882 * 27 26 4 29 29 C 1.43241 * 109.96948 * 24.43751 * 28 27 26 30 30 H 1.09005 * 109.47066 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46895 * 300.00261 * 1 2 3 32 32 H 1.08997 * 109.47079 * 60.00519 * 1 2 3 33 33 H 1.08998 * 109.47074 * 59.99443 * 3 2 1 34 34 H 1.09000 * 109.46794 * 299.99556 * 3 2 1 35 35 H 1.08996 * 109.76109 * 3.11627 * 8 7 5 36 36 H 1.09001 * 109.80151 * 242.37931 * 8 7 5 37 37 H 1.08998 * 109.25061 * 297.05831 * 9 8 7 38 38 H 1.09003 * 109.22098 * 177.60500 * 9 8 7 39 39 H 1.08994 * 110.78012 * 196.64916 * 12 10 9 40 40 H 1.08993 * 110.77854 * 320.08982 * 12 10 9 41 41 H 1.09004 * 109.90063 * 142.23436 * 13 12 10 42 42 H 1.08996 * 109.90055 * 263.29673 * 13 12 10 43 43 H 0.96995 * 120.00207 * 180.02562 * 18 17 15 44 44 H 1.08996 * 109.22737 * 112.19303 * 25 7 5 45 45 H 1.08997 * 109.22707 * 352.82676 * 25 7 5 46 46 H 1.09001 * 111.12455 * 270.44684 * 26 4 3 47 47 H 1.09000 * 111.12342 * 34.60413 * 26 4 3 48 48 H 1.08999 * 110.27864 * 204.65202 * 27 26 4 49 49 H 1.08996 * 110.28913 * 82.51399 * 27 26 4 50 50 H 1.09003 * 109.82405 * 238.77316 * 29 28 27 51 51 H 1.08997 * 109.90495 * 117.84200 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.0210 0.5453 -1.2748 6 8 4.5422 -0.5493 -1.2443 7 7 3.8760 1.1901 -2.4494 8 6 3.1566 2.4711 -2.5325 9 6 4.1061 3.5074 -3.1330 10 6 4.6086 3.0464 -4.5036 11 1 3.8287 3.0736 -5.2645 12 6 5.8415 3.9402 -4.8439 13 6 6.9652 3.3011 -3.9976 14 7 6.5668 1.9076 -3.7271 15 6 7.2688 0.9989 -2.9811 16 1 6.8836 -0.0009 -2.8454 17 6 8.4754 1.3628 -2.3994 18 7 8.9451 2.5811 -2.5653 19 14 9.4334 0.1229 -1.3824 20 1 9.7811 -1.0476 -2.2275 21 1 10.6784 0.7544 -0.8760 22 1 8.6026 -0.3240 -0.2355 23 6 5.2866 1.6678 -4.3974 24 1 5.4988 1.3096 -5.4048 25 6 4.4294 0.6400 -3.6924 26 6 4.1998 2.5726 0.2109 27 6 5.5390 2.1531 0.8807 28 8 5.2057 1.0368 1.7212 29 6 4.0234 0.3924 1.2326 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8463 -0.8900 35 1 2.8495 2.7867 -1.5354 36 1 2.2797 2.3614 -3.1706 37 1 4.9570 3.6444 -2.4656 38 1 3.5794 4.4553 -3.2433 39 1 6.0781 3.8843 -5.9064 40 1 5.6670 4.9720 -4.5391 41 1 7.9030 3.3178 -4.5529 42 1 7.0792 3.8458 -3.0604 43 1 9.7884 2.8352 -2.1591 44 1 3.6115 0.3435 -4.3491 45 1 5.0365 -0.2346 -3.4589 46 1 4.3727 3.0737 -0.7415 47 1 3.6046 3.1959 0.8782 48 1 5.9347 2.9730 1.4800 49 1 6.2629 1.8534 0.1230 50 1 3.2536 0.3979 2.0043 51 1 4.2518 -0.6339 0.9455 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223214192.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:07 Heat of formation + Delta-G solvation = -98.676302 kcal Electronic energy + Delta-G solvation = -33829.766841 eV Core-core repulsion = 29729.837136 eV Total energy + Delta-G solvation = -4099.929706 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.24954 -40.45945 -38.97396 -38.61481 -36.70704 -34.73047 -34.31251 -32.73159 -30.75581 -30.62956 -30.06264 -27.92731 -26.58741 -26.27453 -25.89141 -23.90629 -23.52280 -23.15148 -21.70539 -20.78544 -19.61366 -18.45916 -18.34025 -17.58891 -17.51819 -17.06568 -16.87298 -16.53833 -16.19597 -16.10458 -15.97871 -15.83536 -15.53752 -15.30342 -14.73244 -14.46771 -14.30657 -14.17092 -13.95973 -13.73664 -13.38365 -13.20943 -13.08846 -12.96146 -12.77112 -12.67627 -12.65533 -12.57359 -12.34575 -12.26307 -12.15211 -12.03209 -11.91393 -11.66349 -11.38191 -11.24421 -11.10974 -10.82504 -10.67772 -10.60636 -10.39624 -9.49914 -8.79054 -7.85472 -5.13261 1.30537 1.33908 1.42558 1.68075 2.06753 2.44816 2.57400 2.84741 3.24816 3.33368 3.44279 3.58994 3.72290 3.79363 3.85810 3.92560 4.07313 4.12273 4.19925 4.27861 4.34057 4.42191 4.45766 4.50090 4.56238 4.61683 4.62551 4.66282 4.66401 4.70961 4.73212 4.75840 4.81944 4.85615 4.91210 4.94215 4.97856 5.03260 5.16162 5.20876 5.34330 5.52613 5.67098 5.71282 5.76029 5.85066 5.89048 6.20437 6.23548 6.55862 7.16261 7.28952 7.83832 8.46032 9.24305 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.006209 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.130595 B = 4508.772246 C = 5823.194075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.078 3.922 4 C -0.107 4.107 5 C 0.533 3.467 6 O -0.589 6.589 7 N -0.591 5.591 8 C 0.091 3.909 9 C -0.124 4.124 10 C -0.082 4.082 11 H 0.123 0.877 12 C -0.128 4.128 13 C 0.186 3.814 14 N -0.602 5.602 15 C -0.199 4.199 16 H 0.056 0.944 17 C -0.049 4.049 18 N -0.940 5.940 19 Si 0.937 3.063 20 H -0.285 1.285 21 H -0.285 1.285 22 H -0.301 1.301 23 C 0.142 3.858 24 H 0.023 0.977 25 C 0.119 3.881 26 C -0.134 4.134 27 C 0.046 3.954 28 O -0.405 6.405 29 C 0.074 3.926 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.043 0.957 38 H 0.110 0.890 39 H 0.064 0.936 40 H 0.086 0.914 41 H -0.004 1.004 42 H 0.013 0.987 43 H 0.243 0.757 44 H 0.089 0.911 45 H 0.043 0.957 46 H 0.104 0.896 47 H 0.137 0.863 48 H 0.108 0.892 49 H 0.017 0.983 50 H 0.104 0.896 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.883 7.556 1.396 24.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.338 6.338 3 C 0.002 3.998 4 C -0.110 4.110 5 C 0.322 3.678 6 O -0.469 6.469 7 N -0.323 5.323 8 C -0.030 4.030 9 C -0.162 4.162 10 C -0.102 4.102 11 H 0.141 0.859 12 C -0.166 4.166 13 C 0.061 3.939 14 N -0.327 5.327 15 C -0.329 4.329 16 H 0.074 0.926 17 C -0.242 4.242 18 N -0.590 5.590 19 Si 0.768 3.232 20 H -0.211 1.211 21 H -0.210 1.210 22 H -0.228 1.228 23 C 0.035 3.965 24 H 0.041 0.959 25 C -0.005 4.005 26 C -0.171 4.171 27 C -0.030 4.030 28 O -0.325 6.325 29 C -0.003 4.003 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.062 0.938 38 H 0.128 0.872 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.014 0.986 42 H 0.031 0.969 43 H 0.053 0.947 44 H 0.107 0.893 45 H 0.062 0.938 46 H 0.122 0.878 47 H 0.155 0.845 48 H 0.126 0.874 49 H 0.035 0.965 50 H 0.122 0.878 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -22.178 6.731 1.685 23.238 hybrid contribution 1.715 -1.184 0.364 2.116 sum -20.462 5.547 2.049 21.300 Atomic orbital electron populations 1.22947 0.78733 1.03668 1.01576 1.87970 1.22099 1.28025 1.95710 1.22789 0.87159 0.85746 1.04147 1.22311 0.98226 0.97476 0.93036 1.20356 0.77403 0.84685 0.85400 1.90634 1.46168 1.23365 1.86767 1.47813 1.54473 1.23509 1.06465 1.22421 0.95131 0.81766 1.03676 1.21915 0.99021 0.99298 0.95939 1.22401 0.96694 0.92805 0.98265 0.85940 1.23020 0.95019 0.99283 0.99325 1.20984 0.93614 0.83870 0.95404 1.44406 1.20009 1.09711 1.58619 1.18858 1.00056 0.92333 1.21663 0.92638 1.25047 0.99065 0.97672 1.02465 1.70075 1.21198 1.17796 1.49968 0.85773 0.78521 0.79572 0.79292 1.21144 1.21046 1.22848 1.21033 0.86153 0.95507 0.93823 0.95947 1.21221 0.96938 0.96811 0.85519 1.23732 0.95043 0.94135 1.04157 1.23489 0.97382 0.88696 0.93398 1.88335 1.46002 1.45923 1.52239 1.23050 0.87069 0.95972 0.94206 0.89499 0.91979 0.92510 0.88457 0.89404 0.87466 0.87789 0.93832 0.87165 0.91692 0.89529 0.98590 0.96887 0.94737 0.89260 0.93805 0.87822 0.84511 0.87397 0.96500 0.87767 0.93399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.42 -9.99 10.15 -148.98 -1.51 -11.50 16 3 C 0.08 1.50 4.38 71.98 0.32 1.82 16 4 C -0.11 -3.16 0.34 -51.67 -0.02 -3.18 16 5 C 0.53 20.86 6.20 87.66 0.54 21.41 16 6 O -0.59 -30.14 14.92 -3.02 -0.05 -30.19 16 7 N -0.59 -19.56 2.94 -823.08 -2.42 -21.98 16 8 C 0.09 1.90 4.33 86.20 0.37 2.27 16 9 C -0.12 -2.88 4.69 30.57 0.14 -2.73 16 10 C -0.08 -2.20 3.68 -9.37 -0.03 -2.23 16 11 H 0.12 2.30 8.14 -2.39 -0.02 2.29 16 12 C -0.13 -4.03 6.33 32.16 0.20 -3.83 16 13 C 0.19 8.69 4.61 86.71 0.40 9.09 16 14 N -0.60 -29.80 3.20 -674.06 -2.15 -31.95 16 15 C -0.20 -11.66 9.70 84.03 0.81 -10.85 16 16 H 0.06 3.48 6.51 -2.91 -0.02 3.46 16 17 C -0.05 -2.97 5.49 84.86 0.47 -2.50 16 18 N -0.94 -57.49 10.38 21.65 0.22 -57.27 16 19 Si 0.94 51.63 29.55 68.60 2.03 53.66 16 20 H -0.28 -15.40 7.11 99.48 0.71 -14.70 16 21 H -0.28 -15.23 7.11 99.48 0.71 -14.52 16 22 H -0.30 -17.44 7.11 99.48 0.71 -16.74 16 23 C 0.14 5.35 2.97 44.77 0.13 5.48 16 24 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 25 C 0.12 4.38 5.67 85.76 0.49 4.87 16 26 C -0.13 -3.48 5.13 32.25 0.17 -3.32 16 27 C 0.05 1.72 7.62 72.84 0.56 2.27 16 28 O -0.41 -16.13 11.36 -148.98 -1.69 -17.82 16 29 C 0.07 2.57 6.56 72.45 0.48 3.04 16 30 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.10 1.22 8.07 -2.39 -0.02 1.20 16 34 H 0.09 1.27 5.32 -2.39 -0.01 1.26 16 35 H 0.11 1.77 3.23 -2.39 -0.01 1.77 16 36 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.04 1.40 5.63 -2.39 -0.01 1.39 16 38 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.09 2.29 7.97 -2.39 -0.02 2.27 16 41 H 0.00 -0.23 7.57 -2.38 -0.02 -0.25 16 42 H 0.01 0.68 7.05 -2.39 -0.02 0.66 16 43 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 45 H 0.04 2.07 5.57 -2.39 -0.01 2.06 16 46 H 0.10 2.78 4.05 -2.39 -0.01 2.77 16 47 H 0.14 2.19 7.99 -2.39 -0.02 2.17 16 48 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 49 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.10 2.87 7.82 -2.39 -0.02 2.85 16 51 H 0.05 2.06 6.77 -2.39 -0.02 2.04 16 Total: -1.00 -86.57 373.94 1.63 -84.93 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 0.93 Total: 8.87 kcal Atomic # 6 Polarization: 16.97 SS G_CDS: 6.27 Total: 23.24 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -4.35 Total: -111.19 kcal Atomic # 8 Polarization: -56.26 SS G_CDS: -3.25 Total: -59.51 kcal Atomic # 14 Polarization: 51.63 SS G_CDS: 2.03 Total: 53.66 kcal Total: -86.57 1.63 -84.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223214192.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.743 kcal (2) G-P(sol) polarization free energy of solvation -86.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds