Wall clock time and date at job start Tue Mar 31 2020 22:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86806 * 119.99929 * 2 1 4 4 H 1.48498 * 109.46940 * 90.00109 * 3 2 1 5 5 H 1.48506 * 109.46609 * 210.00152 * 3 2 1 6 6 H 1.48497 * 109.46902 * 329.99865 * 3 2 1 7 7 C 1.38801 * 119.99805 * 179.72900 * 2 1 3 8 8 H 1.08007 * 120.00252 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00184 * 359.97438 * 7 2 1 10 10 C 1.46508 * 120.00002 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.84941 * 336.18783 * 10 9 7 12 12 C 1.53777 * 113.61525 * 107.50122 * 10 9 7 13 13 C 1.53786 * 87.08099 * 139.98038 * 12 10 9 14 14 H 1.08990 * 113.69196 * 89.12283 * 13 12 10 15 15 C 1.53002 * 113.61245 * 220.02216 * 13 12 10 16 16 N 1.46503 * 109.46923 * 272.49117 * 15 13 12 17 17 C 1.34771 * 120.00179 * 180.02562 * 16 15 13 18 18 O 1.21280 * 119.99909 * 354.97703 * 17 16 15 19 19 C 1.50701 * 120.00200 * 174.98062 * 17 16 15 20 20 N 1.46507 * 109.47020 * 324.16967 * 19 17 16 21 21 C 1.34776 * 119.99643 * 304.82005 * 20 19 17 22 22 N 1.34779 * 119.99434 * 175.00125 * 21 20 19 23 23 O 1.21589 * 120.00343 * 355.00483 * 21 20 19 24 24 C 1.53000 * 109.47165 * 204.17213 * 19 17 16 25 25 C 1.52999 * 109.46914 * 179.97438 * 24 19 17 26 26 C 1.52996 * 109.47555 * 59.99980 * 25 24 19 27 27 C 1.53000 * 109.47026 * 299.99952 * 26 25 24 28 28 C 1.53001 * 109.47354 * 84.16565 * 19 17 16 29 29 C 1.53780 * 87.08009 * 334.56571 * 13 12 10 30 30 H 0.96994 * 120.00112 * 179.97438 * 1 2 3 31 31 H 0.96994 * 120.00034 * 359.97438 * 9 7 2 32 32 H 1.08993 * 113.61615 * 254.52444 * 12 10 9 33 33 H 1.09000 * 113.61773 * 25.43377 * 12 10 9 34 34 H 1.08995 * 109.47331 * 32.49319 * 15 13 12 35 35 H 1.08999 * 109.47075 * 152.49749 * 15 13 12 36 36 H 0.97006 * 120.00010 * 0.02562 * 16 15 13 37 37 H 0.96999 * 119.99915 * 124.81499 * 20 19 17 38 38 H 0.96994 * 120.00242 * 0.02562 * 22 21 20 39 39 H 0.97008 * 119.99214 * 179.97438 * 22 21 20 40 40 H 1.08997 * 109.46567 * 299.99630 * 24 19 17 41 41 H 1.08995 * 109.47073 * 59.99441 * 24 19 17 42 42 H 1.08997 * 109.47249 * 299.99271 * 25 24 19 43 43 H 1.09003 * 109.46877 * 179.97438 * 25 24 19 44 44 H 1.08998 * 109.47298 * 180.02562 * 26 25 24 45 45 H 1.08997 * 109.47420 * 59.99397 * 26 25 24 46 46 H 1.09005 * 109.47184 * 299.99885 * 27 26 25 47 47 H 1.08998 * 109.47487 * 179.97438 * 27 26 25 48 48 H 1.08998 * 109.47378 * 300.00741 * 28 19 17 49 49 H 1.09005 * 109.46682 * 60.00480 * 28 19 17 50 50 H 1.09004 * 113.61898 * 270.88610 * 29 13 12 51 51 H 1.08996 * 113.61747 * 139.98303 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4401 -0.7001 6 1 1.4477 2.6527 -0.7001 7 6 2.0102 -1.2021 0.0057 8 1 3.0903 -1.2021 0.0061 9 7 1.3255 -2.3879 0.0118 10 6 2.0581 -3.6567 0.0184 11 1 3.0655 -3.5659 -0.3876 12 6 1.9991 -4.3951 1.3660 13 6 1.8480 -5.6948 0.5579 14 1 2.7977 -6.1631 0.3000 15 6 0.8448 -6.6792 1.1625 16 7 1.5260 -7.5322 2.1395 17 6 0.8360 -8.4812 2.8026 18 8 -0.3650 -8.5695 2.6589 19 6 1.5567 -9.4325 3.7227 20 7 2.8730 -9.7500 3.1632 21 6 2.9725 -10.2440 1.9132 22 7 4.1862 -10.4413 1.3613 23 8 1.9675 -10.5115 1.2834 24 6 0.7405 -10.7185 3.8677 25 6 1.4726 -11.6846 4.8013 26 6 1.6464 -11.0334 6.1748 27 6 2.4626 -9.7474 6.0298 28 6 1.7301 -8.7809 5.0961 29 6 1.2601 -4.8318 -0.5710 30 1 -0.4850 -0.8400 -0.0004 31 1 0.3556 -2.3880 0.0126 32 1 2.9272 -4.3402 1.9349 33 1 1.1209 -4.1469 1.9619 34 1 0.0462 -6.1264 1.6572 35 1 0.4220 -7.2988 0.3717 36 1 2.4738 -7.4140 2.3092 37 1 3.6728 -9.6047 3.6924 38 1 4.9880 -10.2282 1.8639 39 1 4.2578 -10.7972 0.4617 40 1 -0.2387 -10.4823 4.2839 41 1 0.6171 -11.1827 2.8893 42 1 2.4517 -11.9208 4.3846 43 1 0.8909 -12.6006 4.9049 44 1 2.1684 -11.7215 6.8398 45 1 0.6673 -10.7971 6.5915 46 1 3.4418 -9.9835 5.6131 47 1 2.5861 -9.2831 7.0082 48 1 2.3115 -7.8647 4.9928 49 1 0.7508 -8.5447 5.5124 50 1 0.1797 -4.7028 -0.5047 51 1 1.5915 -5.1293 -1.5658 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264404517.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:08 Heat of formation + Delta-G solvation = -51.260953 kcal Electronic energy + Delta-G solvation = -30625.629931 eV Core-core repulsion = 26560.049061 eV Total energy + Delta-G solvation = -4065.580871 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.42100 -39.29886 -38.67216 -37.79434 -34.81092 -34.29661 -33.76621 -33.33965 -31.23592 -30.19390 -29.86272 -27.27927 -25.16040 -24.05894 -23.37925 -23.11154 -22.11560 -21.21057 -20.66834 -19.57935 -19.08927 -18.68031 -17.84212 -17.28524 -17.00573 -16.26798 -15.65253 -15.42545 -15.11690 -14.97464 -14.86062 -14.65900 -14.49183 -14.07122 -13.89846 -13.75127 -13.46465 -13.21318 -12.99853 -12.68001 -12.57930 -12.47813 -11.95493 -11.88687 -11.57080 -11.51983 -11.08227 -10.98548 -10.94005 -10.75984 -10.72762 -10.45710 -10.35967 -10.25426 -10.05175 -10.00002 -9.93451 -9.86531 -9.21329 -9.09487 -8.93892 -8.86003 -7.03582 -6.11471 -3.11343 2.30627 2.74749 2.88760 3.19668 3.50316 3.55410 3.69550 4.07754 4.25189 4.29383 4.34989 4.66237 4.70136 4.79584 4.86304 4.95724 4.98991 5.01649 5.06693 5.18585 5.19374 5.35059 5.46200 5.49276 5.51842 5.60472 5.69311 5.71885 5.79918 5.82082 5.83313 5.89057 5.91629 5.98513 6.09928 6.15988 6.22450 6.25381 6.29143 6.33806 6.46988 6.54381 6.56365 6.75353 7.03764 7.51352 7.57706 7.79950 8.24147 8.31086 8.74454 9.21733 10.08070 10.23462 11.36820 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.002269 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.973023 B =12339.674783 C =12743.081714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.046 4.046 3 Si 1.083 2.917 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.335 4.335 8 H 0.065 0.935 9 N -0.725 5.725 10 C 0.172 3.828 11 H 0.076 0.924 12 C -0.159 4.159 13 C -0.124 4.124 14 H 0.086 0.914 15 C 0.134 3.866 16 N -0.717 5.717 17 C 0.521 3.479 18 O -0.534 6.534 19 C 0.187 3.813 20 N -0.737 5.737 21 C 0.703 3.297 22 N -0.867 5.867 23 O -0.575 6.575 24 C -0.117 4.117 25 C -0.114 4.114 26 C -0.123 4.123 27 C -0.115 4.115 28 C -0.122 4.122 29 C -0.144 4.144 30 H 0.256 0.744 31 H 0.368 0.632 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.395 0.605 37 H 0.398 0.602 38 H 0.396 0.604 39 H 0.415 0.585 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.089 0.911 50 H 0.079 0.921 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.444 -26.203 11.754 30.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.243 4.243 3 Si 0.914 3.086 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.466 4.466 8 H 0.083 0.917 9 N -0.364 5.364 10 C 0.060 3.940 11 H 0.094 0.906 12 C -0.200 4.200 13 C -0.143 4.143 14 H 0.104 0.896 15 C 0.011 3.989 16 N -0.368 5.368 17 C 0.305 3.695 18 O -0.409 6.409 19 C 0.097 3.903 20 N -0.397 5.397 21 C 0.402 3.598 22 N -0.435 5.435 23 O -0.451 6.451 24 C -0.156 4.156 25 C -0.151 4.151 26 C -0.160 4.160 27 C -0.153 4.153 28 C -0.160 4.160 29 C -0.183 4.183 30 H 0.067 0.933 31 H 0.202 0.798 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.229 0.771 37 H 0.234 0.766 38 H 0.223 0.777 39 H 0.248 0.752 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.095 0.905 49 H 0.108 0.892 50 H 0.097 0.903 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.644 -24.685 11.171 28.760 hybrid contribution 1.311 -1.659 0.177 2.122 sum 10.955 -26.344 11.349 30.705 Atomic orbital electron populations 1.70845 1.06061 1.28545 1.53397 1.25802 0.97070 1.01095 1.00370 0.83194 0.73861 0.75326 0.76230 1.22310 1.22158 1.21356 1.20119 0.92039 0.85911 1.48554 0.91698 1.42429 1.04795 1.00887 1.88277 1.21452 0.95241 0.84530 0.92779 0.90626 1.23923 1.01216 0.94996 0.99896 1.22598 0.98377 0.94357 0.98991 0.89619 1.21390 0.95130 0.91593 0.90784 1.45874 1.12944 1.35609 1.42330 1.20496 0.87725 0.80784 0.80544 1.90698 1.14413 1.71809 1.63957 1.20378 0.82403 0.95062 0.92503 1.45257 1.08827 1.70635 1.15007 1.16000 0.84239 0.78154 0.81457 1.43004 1.06494 1.73039 1.20996 1.91032 1.34938 1.56710 1.62384 1.21782 0.98411 0.93438 1.01931 1.21482 1.00672 0.98163 0.94797 1.21591 1.00578 0.96561 0.97289 1.21522 0.98617 0.95728 0.99411 1.21838 1.03282 0.98586 0.92266 1.23455 1.00892 0.97130 0.96862 0.93286 0.79807 0.92828 0.90498 0.91383 0.91853 0.77149 0.76634 0.77682 0.75228 0.90138 0.89397 0.92128 0.91724 0.91862 0.91583 0.91942 0.91041 0.90547 0.89226 0.90277 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.50 13.70 55.49 0.76 -28.74 16 2 C -0.05 -1.34 5.50 -17.43 -0.10 -1.43 16 3 Si 1.08 26.03 29.92 -169.99 -5.09 20.95 16 4 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 7 C -0.34 -9.47 9.97 -15.06 -0.15 -9.62 16 8 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 9 N -0.72 -18.33 5.40 -52.64 -0.28 -18.61 16 10 C 0.17 3.42 4.48 -67.11 -0.30 3.12 16 11 H 0.08 1.51 8.10 -51.93 -0.42 1.08 16 12 C -0.16 -2.69 7.43 -25.92 -0.19 -2.89 16 13 C -0.12 -1.77 3.76 -89.80 -0.34 -2.10 16 14 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 15 C 0.13 1.97 5.52 -4.04 -0.02 1.95 16 16 N -0.72 -9.04 5.12 -60.29 -0.31 -9.35 16 17 C 0.52 7.22 5.18 -10.99 -0.06 7.17 16 18 O -0.53 -9.70 16.09 5.56 0.09 -9.61 16 19 C 0.19 1.77 0.58 -132.97 -0.08 1.70 16 20 N -0.74 -5.07 3.47 -53.50 -0.19 -5.26 16 21 C 0.70 6.55 7.98 -86.92 -0.69 5.86 16 22 N -0.87 -4.47 8.88 27.64 0.25 -4.22 16 23 O -0.57 -8.42 14.46 5.29 0.08 -8.34 16 24 C -0.12 -1.22 4.11 -26.73 -0.11 -1.33 16 25 C -0.11 -0.83 5.76 -26.73 -0.15 -0.99 16 26 C -0.12 -0.70 5.92 -26.73 -0.16 -0.85 16 27 C -0.12 -0.56 5.75 -26.70 -0.15 -0.71 16 28 C -0.12 -0.86 4.79 -26.70 -0.13 -0.98 16 29 C -0.14 -2.40 7.39 -25.92 -0.19 -2.59 16 30 H 0.26 7.90 6.77 -40.82 -0.28 7.62 16 31 H 0.37 9.67 6.76 -40.82 -0.28 9.40 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.43 7.90 -51.93 -0.41 1.02 16 34 H 0.07 1.11 7.84 -51.93 -0.41 0.70 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.40 4.04 7.95 -40.82 -0.32 3.71 16 37 H 0.40 1.44 7.19 -40.82 -0.29 1.15 16 38 H 0.40 0.73 8.85 -40.82 -0.36 0.37 16 39 H 0.42 2.06 8.93 -40.82 -0.36 1.70 16 40 H 0.08 0.92 7.87 -51.93 -0.41 0.51 16 41 H 0.09 1.20 6.36 -51.93 -0.33 0.87 16 42 H 0.06 0.43 7.60 -51.93 -0.39 0.04 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.22 6.77 -51.93 -0.35 -0.13 16 47 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.08 1.38 8.08 -51.93 -0.42 0.96 16 51 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 398.67 15.07 6.01 6.01 Total: -1.00 -37.50 398.67 -9.98 -47.48 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -8.47 Total: 13.43 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -2.82 Total: -3.72 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: 0.23 Total: -66.19 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.17 Total: -17.95 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: -5.09 Total: 20.95 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.50 -9.98 -47.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264404517.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.779 kcal (2) G-P(sol) polarization free energy of solvation -37.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds