Wall clock time and date at job start Tue Mar 31 2020 22:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86806 * 119.99929 * 2 1 4 4 H 1.48498 * 109.46940 * 90.00109 * 3 2 1 5 5 H 1.48506 * 109.46609 * 210.00152 * 3 2 1 6 6 H 1.48497 * 109.46902 * 329.99865 * 3 2 1 7 7 C 1.38801 * 119.99805 * 179.72900 * 2 1 3 8 8 H 1.08007 * 120.00252 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00184 * 359.97438 * 7 2 1 10 10 C 1.46508 * 120.00002 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.84941 * 336.18783 * 10 9 7 12 12 C 1.53777 * 113.61525 * 107.50122 * 10 9 7 13 13 C 1.53786 * 87.08099 * 139.98038 * 12 10 9 14 14 H 1.08990 * 113.69196 * 89.12283 * 13 12 10 15 15 C 1.53002 * 113.61245 * 220.02216 * 13 12 10 16 16 N 1.46503 * 109.46923 * 272.49117 * 15 13 12 17 17 C 1.34771 * 120.00179 * 180.02562 * 16 15 13 18 18 O 1.21280 * 119.99909 * 354.97703 * 17 16 15 19 19 C 1.50701 * 120.00200 * 174.98062 * 17 16 15 20 20 N 1.46507 * 109.47020 * 324.16967 * 19 17 16 21 21 C 1.34776 * 119.99643 * 304.82005 * 20 19 17 22 22 N 1.34779 * 119.99434 * 175.00125 * 21 20 19 23 23 O 1.21589 * 120.00343 * 355.00483 * 21 20 19 24 24 C 1.53000 * 109.47165 * 204.17213 * 19 17 16 25 25 C 1.52999 * 109.46914 * 179.97438 * 24 19 17 26 26 C 1.52996 * 109.47555 * 59.99980 * 25 24 19 27 27 C 1.53000 * 109.47026 * 299.99952 * 26 25 24 28 28 C 1.53001 * 109.47354 * 84.16565 * 19 17 16 29 29 C 1.53780 * 87.08009 * 334.56571 * 13 12 10 30 30 H 0.96994 * 120.00112 * 179.97438 * 1 2 3 31 31 H 0.96994 * 120.00034 * 359.97438 * 9 7 2 32 32 H 1.08993 * 113.61615 * 254.52444 * 12 10 9 33 33 H 1.09000 * 113.61773 * 25.43377 * 12 10 9 34 34 H 1.08995 * 109.47331 * 32.49319 * 15 13 12 35 35 H 1.08999 * 109.47075 * 152.49749 * 15 13 12 36 36 H 0.97006 * 120.00010 * 0.02562 * 16 15 13 37 37 H 0.96999 * 119.99915 * 124.81499 * 20 19 17 38 38 H 0.96994 * 120.00242 * 0.02562 * 22 21 20 39 39 H 0.97008 * 119.99214 * 179.97438 * 22 21 20 40 40 H 1.08997 * 109.46567 * 299.99630 * 24 19 17 41 41 H 1.08995 * 109.47073 * 59.99441 * 24 19 17 42 42 H 1.08997 * 109.47249 * 299.99271 * 25 24 19 43 43 H 1.09003 * 109.46877 * 179.97438 * 25 24 19 44 44 H 1.08998 * 109.47298 * 180.02562 * 26 25 24 45 45 H 1.08997 * 109.47420 * 59.99397 * 26 25 24 46 46 H 1.09005 * 109.47184 * 299.99885 * 27 26 25 47 47 H 1.08998 * 109.47487 * 179.97438 * 27 26 25 48 48 H 1.08998 * 109.47378 * 300.00741 * 28 19 17 49 49 H 1.09005 * 109.46682 * 60.00480 * 28 19 17 50 50 H 1.09004 * 113.61898 * 270.88610 * 29 13 12 51 51 H 1.08996 * 113.61747 * 139.98303 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4401 -0.7001 6 1 1.4477 2.6527 -0.7001 7 6 2.0102 -1.2021 0.0057 8 1 3.0903 -1.2021 0.0061 9 7 1.3255 -2.3879 0.0118 10 6 2.0581 -3.6567 0.0184 11 1 3.0655 -3.5659 -0.3876 12 6 1.9991 -4.3951 1.3660 13 6 1.8480 -5.6948 0.5579 14 1 2.7977 -6.1631 0.3000 15 6 0.8448 -6.6792 1.1625 16 7 1.5260 -7.5322 2.1395 17 6 0.8360 -8.4812 2.8026 18 8 -0.3650 -8.5695 2.6589 19 6 1.5567 -9.4325 3.7227 20 7 2.8730 -9.7500 3.1632 21 6 2.9725 -10.2440 1.9132 22 7 4.1862 -10.4413 1.3613 23 8 1.9675 -10.5115 1.2834 24 6 0.7405 -10.7185 3.8677 25 6 1.4726 -11.6846 4.8013 26 6 1.6464 -11.0334 6.1748 27 6 2.4626 -9.7474 6.0298 28 6 1.7301 -8.7809 5.0961 29 6 1.2601 -4.8318 -0.5710 30 1 -0.4850 -0.8400 -0.0004 31 1 0.3556 -2.3880 0.0126 32 1 2.9272 -4.3402 1.9349 33 1 1.1209 -4.1469 1.9619 34 1 0.0462 -6.1264 1.6572 35 1 0.4220 -7.2988 0.3717 36 1 2.4738 -7.4140 2.3092 37 1 3.6728 -9.6047 3.6924 38 1 4.9880 -10.2282 1.8639 39 1 4.2578 -10.7972 0.4617 40 1 -0.2387 -10.4823 4.2839 41 1 0.6171 -11.1827 2.8893 42 1 2.4517 -11.9208 4.3846 43 1 0.8909 -12.6006 4.9049 44 1 2.1684 -11.7215 6.8398 45 1 0.6673 -10.7971 6.5915 46 1 3.4418 -9.9835 5.6131 47 1 2.5861 -9.2831 7.0082 48 1 2.3115 -7.8647 4.9928 49 1 0.7508 -8.5447 5.5124 50 1 0.1797 -4.7028 -0.5047 51 1 1.5915 -5.1293 -1.5658 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264404517.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:07 Heat of formation + Delta-G solvation = -81.343563 kcal Electronic energy + Delta-G solvation = -30626.934411 eV Core-core repulsion = 26560.049061 eV Total energy + Delta-G solvation = -4066.885351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.25609 -40.46238 -39.81652 -38.67336 -36.33809 -35.40063 -34.94626 -34.15034 -32.03624 -31.78594 -30.69480 -28.64944 -26.59063 -25.79112 -24.53460 -23.73116 -22.89605 -22.57977 -21.61300 -20.61790 -20.18050 -19.43432 -19.30562 -18.63452 -17.74657 -17.31176 -16.78360 -16.71209 -16.14281 -16.10799 -15.85468 -15.69156 -15.46276 -15.32846 -15.19425 -14.93583 -14.66148 -14.45768 -13.77886 -13.54560 -13.38268 -13.36856 -13.26568 -13.19587 -13.06393 -12.65047 -12.56837 -12.16320 -12.10617 -11.86077 -11.80261 -11.68934 -11.51400 -11.43414 -11.37035 -11.26415 -11.05731 -10.86802 -10.81258 -10.63263 -10.12278 -10.00058 -9.10875 -8.40095 -5.33999 1.43899 1.57925 1.69201 1.83019 1.87513 2.06974 2.26068 2.72011 3.37066 3.47485 3.55134 3.59886 3.63864 3.65290 3.71451 3.80988 4.05276 4.11633 4.18329 4.22356 4.23363 4.28622 4.42751 4.45089 4.48838 4.63563 4.66064 4.76003 4.83637 4.84379 4.91106 4.99340 5.09393 5.10671 5.14990 5.19232 5.23152 5.26526 5.34502 5.38648 5.39643 5.51598 5.57318 5.62502 5.89487 6.03910 6.47496 6.49062 7.08278 7.09858 7.18911 7.67752 7.98386 8.12096 9.11626 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.002269 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.973023 B =12339.674783 C =12743.081714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.110 4.110 3 Si 1.131 2.869 4 H -0.284 1.284 5 H -0.269 1.269 6 H -0.296 1.296 7 C -0.331 4.331 8 H 0.072 0.928 9 N -0.743 5.743 10 C 0.151 3.849 11 H 0.081 0.919 12 C -0.147 4.147 13 C -0.092 4.092 14 H 0.118 0.882 15 C 0.141 3.859 16 N -0.705 5.705 17 C 0.511 3.489 18 O -0.586 6.586 19 C 0.197 3.803 20 N -0.718 5.718 21 C 0.698 3.302 22 N -0.845 5.845 23 O -0.632 6.632 24 C -0.114 4.114 25 C -0.106 4.106 26 C -0.121 4.121 27 C -0.109 4.109 28 C -0.119 4.119 29 C -0.140 4.140 30 H 0.242 0.758 31 H 0.358 0.642 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.410 0.590 37 H 0.420 0.580 38 H 0.416 0.584 39 H 0.419 0.581 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.057 0.943 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.091 0.909 49 H 0.074 0.926 50 H 0.064 0.936 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.585 -27.149 13.242 33.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.301 4.301 3 Si 0.956 3.044 4 H -0.211 1.211 5 H -0.194 1.194 6 H -0.222 1.222 7 C -0.462 4.462 8 H 0.090 0.910 9 N -0.382 5.382 10 C 0.042 3.958 11 H 0.099 0.901 12 C -0.188 4.188 13 C -0.111 4.111 14 H 0.136 0.864 15 C 0.017 3.983 16 N -0.356 5.356 17 C 0.297 3.703 18 O -0.465 6.465 19 C 0.106 3.894 20 N -0.379 5.379 21 C 0.396 3.604 22 N -0.414 5.414 23 O -0.512 6.512 24 C -0.154 4.154 25 C -0.143 4.143 26 C -0.159 4.159 27 C -0.146 4.146 28 C -0.157 4.157 29 C -0.180 4.180 30 H 0.053 0.947 31 H 0.189 0.811 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.247 0.753 37 H 0.259 0.741 38 H 0.247 0.753 39 H 0.252 0.748 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.104 0.896 47 H 0.106 0.894 48 H 0.110 0.890 49 H 0.093 0.907 50 H 0.083 0.917 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.938 -25.688 12.696 31.864 hybrid contribution 0.028 -1.475 -0.335 1.513 sum 13.967 -27.163 12.361 32.950 Atomic orbital electron populations 1.70966 1.07350 1.27831 1.56572 1.27280 0.97104 1.04958 1.00742 0.82583 0.73604 0.71366 0.76855 1.21116 1.19449 1.22230 1.20500 0.92503 0.87028 1.46171 0.91050 1.42669 1.04534 1.02116 1.88867 1.21862 0.95432 0.83312 0.95197 0.90096 1.23680 1.01223 0.95492 0.98415 1.22412 0.99101 0.92971 0.96585 0.86429 1.21132 0.94975 0.91470 0.90714 1.45725 1.13544 1.34898 1.41457 1.21398 0.87407 0.80965 0.80488 1.90668 1.16946 1.73130 1.65771 1.20173 0.82941 0.93511 0.92813 1.44945 1.08612 1.69822 1.14559 1.16249 0.84496 0.77924 0.81724 1.42791 1.05883 1.71647 1.21097 1.91020 1.37238 1.59054 1.63873 1.21699 0.98435 0.94585 1.00642 1.21436 1.00424 0.97283 0.95176 1.21597 1.00776 0.97382 0.96119 1.21542 0.98929 0.94468 0.99685 1.21877 1.03302 0.99722 0.90786 1.23360 0.99829 0.96242 0.98534 0.94718 0.81050 0.90862 0.92672 0.93565 0.93315 0.75319 0.74072 0.75330 0.74824 0.92177 0.93069 0.91242 0.91924 0.89932 0.92404 0.89632 0.89393 0.89013 0.90723 0.91739 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.72 13.70 21.65 0.30 -62.42 16 2 C -0.11 -6.48 5.50 84.86 0.47 -6.01 16 3 Si 1.13 52.14 29.92 68.60 2.05 54.19 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 6 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 7 C -0.33 -18.63 9.97 84.03 0.84 -17.79 16 8 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.74 -37.98 5.40 -320.44 -1.73 -39.71 16 10 C 0.15 5.87 4.48 45.52 0.20 6.08 16 11 H 0.08 3.06 8.10 -2.39 -0.02 3.04 16 12 C -0.15 -4.78 7.43 31.12 0.23 -4.54 16 13 C -0.09 -2.44 3.76 -10.27 -0.04 -2.48 16 14 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 15 C 0.14 4.14 5.52 86.38 0.48 4.62 16 16 N -0.71 -17.17 5.12 -463.07 -2.37 -19.54 16 17 C 0.51 14.42 5.18 87.66 0.45 14.87 16 18 O -0.59 -22.67 16.09 -3.03 -0.05 -22.71 16 19 C 0.20 3.58 0.58 2.86 0.00 3.58 16 20 N -0.72 -8.13 3.47 -441.43 -1.53 -9.66 16 21 C 0.70 11.79 7.98 179.05 1.43 13.22 16 22 N -0.84 -6.26 8.88 -184.74 -1.64 -7.90 16 23 O -0.63 -18.62 14.46 -3.99 -0.06 -18.68 16 24 C -0.11 -2.48 4.11 30.59 0.13 -2.36 16 25 C -0.11 -1.42 5.76 30.59 0.18 -1.24 16 26 C -0.12 -1.07 5.92 30.59 0.18 -0.89 16 27 C -0.11 -0.66 5.75 30.61 0.18 -0.48 16 28 C -0.12 -1.42 4.79 30.61 0.15 -1.28 16 29 C -0.14 -4.58 7.39 31.12 0.23 -4.35 16 30 H 0.24 15.59 6.77 -92.71 -0.63 14.96 16 31 H 0.36 19.50 6.76 -92.71 -0.63 18.87 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.05 2.05 7.90 -2.39 -0.02 2.04 16 34 H 0.05 1.57 7.84 -2.39 -0.02 1.55 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.41 7.26 7.95 -92.70 -0.74 6.53 16 37 H 0.42 1.22 7.19 -92.71 -0.67 0.55 16 38 H 0.42 -0.16 8.85 -92.71 -0.82 -0.98 16 39 H 0.42 3.14 8.93 -92.70 -0.83 2.31 16 40 H 0.06 1.50 7.87 -2.39 -0.02 1.48 16 41 H 0.05 1.50 6.36 -2.39 -0.02 1.48 16 42 H 0.07 0.82 7.60 -2.39 -0.02 0.80 16 43 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.09 0.15 6.77 -2.38 -0.02 0.14 16 47 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 50 H 0.06 2.31 8.08 -2.38 -0.02 2.29 16 51 H 0.08 2.29 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -86.94 398.67 -2.48 -89.42 By element: Atomic # 1 Polarization: 38.61 SS G_CDS: -2.55 Total: 36.06 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 5.10 Total: 0.95 kcal Atomic # 7 Polarization: -132.26 SS G_CDS: -6.98 Total: -139.23 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -0.11 Total: -41.39 kcal Atomic # 14 Polarization: 52.14 SS G_CDS: 2.05 Total: 54.19 kcal Total: -86.94 -2.48 -89.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264404517.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.080 kcal (2) G-P(sol) polarization free energy of solvation -86.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds