Wall clock time and date at job start Tue Mar 31 2020 22:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99810 * 2 1 4 4 H 1.48504 * 109.47433 * 274.99610 * 3 2 1 5 5 H 1.48501 * 109.47130 * 34.99786 * 3 2 1 6 6 H 1.48500 * 109.47148 * 154.99642 * 3 2 1 7 7 C 1.38811 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00154 * 185.55600 * 7 2 1 9 9 N 1.36935 * 119.99808 * 5.55319 * 7 2 1 10 10 C 1.47287 * 125.79373 * 5.34259 * 9 7 2 11 11 C 1.54328 * 107.30671 * 178.92701 * 10 9 7 12 12 C 1.55149 * 102.94232 * 337.81782 * 11 10 9 13 13 H 1.08998 * 111.04449 * 277.41550 * 12 11 10 14 14 C 1.53003 * 111.00357 * 153.57666 * 12 11 10 15 15 N 1.46507 * 109.47163 * 181.35526 * 14 12 11 16 16 C 1.34774 * 119.99698 * 180.02562 * 15 14 12 17 17 O 1.21279 * 120.00244 * 355.01268 * 16 15 14 18 18 C 1.50698 * 119.99654 * 175.02095 * 16 15 14 19 19 N 1.46501 * 109.47467 * 324.05439 * 18 16 15 20 20 C 1.34779 * 119.99825 * 304.82695 * 19 18 16 21 21 N 1.34769 * 119.99875 * 175.00743 * 20 19 18 22 22 O 1.21585 * 119.99824 * 355.00775 * 20 19 18 23 23 C 1.52996 * 109.46947 * 204.05354 * 18 16 15 24 24 C 1.53005 * 109.47271 * 179.97438 * 23 18 16 25 25 C 1.52997 * 109.47304 * 59.99982 * 24 23 18 26 26 C 1.53005 * 109.47299 * 300.00501 * 25 24 23 27 27 C 1.53001 * 109.47009 * 59.99461 * 26 25 24 28 28 C 1.47425 * 125.64957 * 185.34793 * 9 7 2 29 29 H 0.96998 * 120.00235 * 0.02562 * 1 2 3 30 30 H 1.09010 * 109.85526 * 59.50539 * 10 9 7 31 31 H 1.08996 * 109.87744 * 298.36083 * 10 9 7 32 32 H 1.09000 * 110.71764 * 219.45367 * 11 10 9 33 33 H 1.09000 * 110.87157 * 96.25553 * 11 10 9 34 34 H 1.09008 * 109.46946 * 301.34673 * 14 12 11 35 35 H 1.08985 * 109.47288 * 61.35046 * 14 12 11 36 36 H 0.96994 * 119.99794 * 359.97438 * 15 14 12 37 37 H 0.96995 * 119.99984 * 124.81417 * 19 18 16 38 38 H 0.96995 * 120.00357 * 359.97438 * 21 20 19 39 39 H 0.97002 * 120.00146 * 179.97438 * 21 20 19 40 40 H 1.08995 * 109.47725 * 299.99891 * 23 18 16 41 41 H 1.09002 * 109.47346 * 60.00069 * 23 18 16 42 42 H 1.09004 * 109.46568 * 300.00394 * 24 23 18 43 43 H 1.08999 * 109.47440 * 180.02562 * 24 23 18 44 44 H 1.08995 * 109.47434 * 180.02562 * 25 24 23 45 45 H 1.09006 * 109.46851 * 59.99886 * 25 24 23 46 46 H 1.09002 * 109.46721 * 300.00022 * 26 25 24 47 47 H 1.08997 * 109.47207 * 179.97438 * 26 25 24 48 48 H 1.09001 * 109.47005 * 180.02562 * 27 26 25 49 49 H 1.08993 * 109.47034 * 60.00519 * 27 26 25 50 50 H 1.08999 * 110.36877 * 85.26054 * 28 9 7 51 51 H 1.08998 * 110.36847 * 323.04990 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1075 -1.3948 5 1 1.5043 2.6199 0.8030 6 1 3.5965 1.4121 0.5918 7 6 2.0103 -1.2021 -0.0005 8 1 3.0865 -1.2043 0.0900 9 7 1.3305 -2.3852 -0.1158 10 6 -0.1156 -2.5279 -0.3564 11 6 -0.4206 -4.0385 -0.4380 12 6 0.9570 -4.6519 -0.8032 13 1 1.1410 -4.5899 -1.8757 14 6 1.0601 -6.0981 -0.3147 15 7 2.3828 -6.6329 -0.6478 16 6 2.7019 -7.8987 -0.3124 17 8 1.9298 -8.5651 0.3438 18 6 4.0181 -8.4858 -0.7526 19 7 4.3553 -7.9832 -2.0868 20 6 3.4846 -8.1357 -3.1042 21 7 3.7495 -7.5861 -4.3059 22 8 2.4603 -8.7693 -2.9379 23 6 3.9074 -10.0111 -0.7952 24 6 5.2435 -10.6072 -1.2428 25 6 6.3391 -10.2029 -0.2542 26 6 6.4498 -8.6775 -0.2115 27 6 5.1136 -8.0815 0.2360 28 6 1.9251 -3.7307 -0.0196 29 1 -0.4850 0.8400 -0.0004 30 1 -0.3842 -2.0441 -1.2956 31 1 -0.6740 -2.0809 0.4661 32 1 -1.1528 -4.2424 -1.2192 33 1 -0.7687 -4.4169 0.5231 34 1 0.9178 -6.1278 0.7656 35 1 0.2920 -6.7009 -0.7990 36 1 3.0285 -6.0763 -1.1103 37 1 5.2050 -7.5405 -2.2378 38 1 4.5665 -7.0803 -4.4384 39 1 3.1231 -7.6962 -5.0383 40 1 3.6566 -10.3852 0.1974 41 1 3.1272 -10.2993 -1.4998 42 1 5.4939 -10.2331 -2.2355 43 1 5.1645 -11.6939 -1.2736 44 1 7.2910 -10.6272 -0.5733 45 1 6.0886 -10.5769 0.7386 46 1 6.7002 -8.3035 -1.2043 47 1 7.2300 -8.3894 0.4931 48 1 5.1924 -6.9947 0.2660 49 1 4.8633 -8.4554 1.2287 50 1 1.9872 -4.0445 1.0224 51 1 2.9140 -3.7422 -0.4779 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266537547.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:14 Heat of formation + Delta-G solvation = -57.763755 kcal Electronic energy + Delta-G solvation = -31299.671475 eV Core-core repulsion = 27233.808621 eV Total energy + Delta-G solvation = -4065.862853 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.30193 -39.07394 -38.12748 -37.36547 -34.64881 -34.14202 -33.53428 -32.38609 -31.13508 -30.03004 -29.62076 -28.20698 -25.64315 -24.17891 -23.06742 -22.93174 -21.94753 -20.65850 -19.92948 -19.85795 -19.28933 -18.56357 -17.72489 -16.96673 -16.73685 -16.09058 -15.64322 -15.32012 -14.92537 -14.81717 -14.64167 -14.48914 -14.40449 -13.96834 -13.91353 -13.50869 -13.09686 -12.95643 -12.58487 -12.48173 -12.37538 -12.31696 -11.94651 -11.69615 -11.47067 -11.38994 -10.96413 -10.90322 -10.88958 -10.81900 -10.65592 -10.40925 -10.27190 -10.13528 -10.00842 -9.92287 -9.83867 -9.80013 -9.62656 -9.05374 -8.80688 -8.62510 -6.83033 -5.71729 -3.06623 2.43066 2.87359 3.01239 3.33867 3.37951 3.42630 3.45443 4.20908 4.35781 4.39946 4.45298 4.48279 4.80422 4.91576 4.96370 5.09941 5.16200 5.17640 5.29372 5.30367 5.43485 5.44209 5.56188 5.61245 5.70036 5.72126 5.77812 5.81378 5.91498 5.93463 6.01101 6.09826 6.14324 6.19743 6.26572 6.36398 6.46001 6.48560 6.56291 6.56756 6.69676 6.73183 6.93386 7.50724 7.65495 7.65536 7.70771 7.81694 8.25374 8.36344 8.43678 9.20026 9.81296 10.48561 11.39333 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015850 B = 0.002785 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.115042 B =10051.113433 C =10440.641020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.175 3.825 11 C -0.134 4.134 12 C -0.116 4.116 13 H 0.076 0.924 14 C 0.134 3.866 15 N -0.716 5.716 16 C 0.522 3.478 17 O -0.537 6.537 18 C 0.186 3.814 19 N -0.738 5.738 20 C 0.704 3.296 21 N -0.866 5.866 22 O -0.576 6.576 23 C -0.116 4.116 24 C -0.114 4.114 25 C -0.122 4.122 26 C -0.115 4.115 27 C -0.122 4.122 28 C 0.144 3.856 29 H 0.252 0.748 30 H 0.033 0.967 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.397 0.603 37 H 0.399 0.601 38 H 0.396 0.604 39 H 0.415 0.585 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.089 0.911 50 H 0.019 0.981 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.069 -19.191 -5.967 24.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.050 3.950 11 C -0.173 4.173 12 C -0.136 4.136 13 H 0.094 0.906 14 C 0.011 3.989 15 N -0.367 5.367 16 C 0.306 3.694 17 O -0.412 6.412 18 C 0.096 3.904 19 N -0.397 5.397 20 C 0.403 3.597 21 N -0.435 5.435 22 O -0.453 6.453 23 C -0.155 4.155 24 C -0.151 4.151 25 C -0.160 4.160 26 C -0.153 4.153 27 C -0.160 4.160 28 C 0.018 3.982 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.231 0.769 37 H 0.234 0.766 38 H 0.224 0.776 39 H 0.248 0.752 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.096 0.904 49 H 0.107 0.893 50 H 0.036 0.964 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 12.569 -19.988 -5.153 24.167 hybrid contribution 1.249 1.748 -0.822 2.300 sum 13.818 -18.240 -5.975 23.650 Atomic orbital electron populations 1.69961 1.04913 1.25012 1.56812 1.24816 0.95686 0.97702 1.02285 0.86111 0.78617 0.83644 0.77446 1.21692 1.21725 1.20648 1.19043 0.90608 0.82587 1.43517 0.90547 1.44539 1.04135 0.99814 1.84670 1.21214 0.85006 0.88385 1.00397 1.22837 0.94859 0.99191 1.00384 1.22583 0.98630 0.92167 1.00177 0.90574 1.21363 0.83539 0.93558 1.00463 1.45903 1.17144 1.13483 1.60148 1.20468 0.87884 0.81640 0.79451 1.90680 1.50968 1.60329 1.39249 1.20372 0.92793 0.95518 0.81690 1.45255 1.21361 1.64753 1.08379 1.15983 0.83354 0.79804 0.80608 1.42993 1.27874 1.60069 1.12523 1.91019 1.26831 1.45072 1.82329 1.21776 0.98393 0.91453 1.03883 1.21485 0.94415 1.00290 0.98946 1.21588 0.98764 0.95481 1.00132 1.21515 0.96343 0.95908 1.01540 1.21830 0.93604 1.01775 0.98800 1.21530 0.94387 0.86230 0.96078 0.93754 0.94903 0.92531 0.92064 0.92075 0.91445 0.91818 0.76931 0.76600 0.77631 0.75249 0.90184 0.89407 0.92116 0.91795 0.91929 0.91636 0.91911 0.91062 0.90413 0.89263 0.96353 0.95000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.11 10.44 55.49 0.58 -26.53 16 2 C -0.01 -0.24 5.46 -17.43 -0.10 -0.33 16 3 Si 0.91 21.92 29.56 -169.99 -5.02 16.90 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.35 10.27 -15.06 -0.15 -6.51 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.61 -15.41 3.40 -169.86 -0.58 -15.99 16 10 C 0.17 4.27 5.41 -2.92 -0.02 4.25 16 11 C -0.13 -2.54 6.42 -24.90 -0.16 -2.70 16 12 C -0.12 -2.01 3.11 -88.47 -0.27 -2.29 16 13 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 14 C 0.13 2.16 5.13 -4.04 -0.02 2.14 16 15 N -0.72 -10.14 4.98 -60.29 -0.30 -10.44 16 16 C 0.52 7.73 5.18 -10.99 -0.06 7.67 16 17 O -0.54 -10.02 16.09 5.56 0.09 -9.93 16 18 C 0.19 1.96 0.58 -132.97 -0.08 1.88 16 19 N -0.74 -6.07 3.47 -53.50 -0.19 -6.26 16 20 C 0.70 7.51 7.98 -86.92 -0.69 6.82 16 21 N -0.87 -5.81 8.88 27.63 0.25 -5.57 16 22 O -0.58 -9.07 14.46 5.29 0.08 -8.99 16 23 C -0.12 -1.30 4.11 -26.73 -0.11 -1.41 16 24 C -0.11 -0.91 5.77 -26.73 -0.15 -1.06 16 25 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 26 C -0.12 -0.67 5.75 -26.73 -0.15 -0.82 16 27 C -0.12 -0.97 4.78 -26.73 -0.13 -1.10 16 28 C 0.14 2.92 6.40 -2.53 -0.02 2.90 16 29 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.03 0.87 7.83 -51.92 -0.41 0.47 16 31 H 0.06 1.54 7.10 -51.93 -0.37 1.18 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.11 8.04 -51.93 -0.42 0.69 16 34 H 0.07 1.14 8.10 -51.92 -0.42 0.72 16 35 H 0.06 1.08 8.14 -51.94 -0.42 0.65 16 36 H 0.40 4.95 7.82 -40.82 -0.32 4.63 16 37 H 0.40 2.04 7.19 -40.82 -0.29 1.74 16 38 H 0.40 1.41 8.85 -40.82 -0.36 1.04 16 39 H 0.42 2.67 8.93 -40.82 -0.36 2.31 16 40 H 0.08 0.95 7.87 -51.93 -0.41 0.54 16 41 H 0.09 1.25 6.36 -51.93 -0.33 0.92 16 42 H 0.06 0.48 7.60 -51.93 -0.39 0.08 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.29 6.77 -51.93 -0.35 -0.06 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.02 0.39 8.00 -51.93 -0.42 -0.03 16 51 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 392.87 15.07 5.92 5.92 Total: -1.00 -36.13 392.87 -10.07 -46.20 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -8.63 Total: 6.19 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -2.27 Total: 8.50 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: -0.24 Total: -64.79 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.17 Total: -18.92 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.13 -10.07 -46.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266537547.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.565 kcal (2) G-P(sol) polarization free energy of solvation -36.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds