Wall clock time and date at job start Tue Mar 31 2020 22:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99810 * 2 1 4 4 H 1.48504 * 109.47433 * 274.99610 * 3 2 1 5 5 H 1.48501 * 109.47130 * 34.99786 * 3 2 1 6 6 H 1.48500 * 109.47148 * 154.99642 * 3 2 1 7 7 C 1.38811 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00154 * 185.55600 * 7 2 1 9 9 N 1.36935 * 119.99808 * 5.55319 * 7 2 1 10 10 C 1.47287 * 125.79373 * 5.34259 * 9 7 2 11 11 C 1.54328 * 107.30671 * 178.92701 * 10 9 7 12 12 C 1.55149 * 102.94232 * 337.81782 * 11 10 9 13 13 H 1.08998 * 111.04449 * 277.41550 * 12 11 10 14 14 C 1.53003 * 111.00357 * 153.57666 * 12 11 10 15 15 N 1.46507 * 109.47163 * 181.35526 * 14 12 11 16 16 C 1.34774 * 119.99698 * 180.02562 * 15 14 12 17 17 O 1.21279 * 120.00244 * 355.01268 * 16 15 14 18 18 C 1.50698 * 119.99654 * 175.02095 * 16 15 14 19 19 N 1.46501 * 109.47467 * 324.05439 * 18 16 15 20 20 C 1.34779 * 119.99825 * 304.82695 * 19 18 16 21 21 N 1.34769 * 119.99875 * 175.00743 * 20 19 18 22 22 O 1.21585 * 119.99824 * 355.00775 * 20 19 18 23 23 C 1.52996 * 109.46947 * 204.05354 * 18 16 15 24 24 C 1.53005 * 109.47271 * 179.97438 * 23 18 16 25 25 C 1.52997 * 109.47304 * 59.99982 * 24 23 18 26 26 C 1.53005 * 109.47299 * 300.00501 * 25 24 23 27 27 C 1.53001 * 109.47009 * 59.99461 * 26 25 24 28 28 C 1.47425 * 125.64957 * 185.34793 * 9 7 2 29 29 H 0.96998 * 120.00235 * 0.02562 * 1 2 3 30 30 H 1.09010 * 109.85526 * 59.50539 * 10 9 7 31 31 H 1.08996 * 109.87744 * 298.36083 * 10 9 7 32 32 H 1.09000 * 110.71764 * 219.45367 * 11 10 9 33 33 H 1.09000 * 110.87157 * 96.25553 * 11 10 9 34 34 H 1.09008 * 109.46946 * 301.34673 * 14 12 11 35 35 H 1.08985 * 109.47288 * 61.35046 * 14 12 11 36 36 H 0.96994 * 119.99794 * 359.97438 * 15 14 12 37 37 H 0.96995 * 119.99984 * 124.81417 * 19 18 16 38 38 H 0.96995 * 120.00357 * 359.97438 * 21 20 19 39 39 H 0.97002 * 120.00146 * 179.97438 * 21 20 19 40 40 H 1.08995 * 109.47725 * 299.99891 * 23 18 16 41 41 H 1.09002 * 109.47346 * 60.00069 * 23 18 16 42 42 H 1.09004 * 109.46568 * 300.00394 * 24 23 18 43 43 H 1.08999 * 109.47440 * 180.02562 * 24 23 18 44 44 H 1.08995 * 109.47434 * 180.02562 * 25 24 23 45 45 H 1.09006 * 109.46851 * 59.99886 * 25 24 23 46 46 H 1.09002 * 109.46721 * 300.00022 * 26 25 24 47 47 H 1.08997 * 109.47207 * 179.97438 * 26 25 24 48 48 H 1.09001 * 109.47005 * 180.02562 * 27 26 25 49 49 H 1.08993 * 109.47034 * 60.00519 * 27 26 25 50 50 H 1.08999 * 110.36877 * 85.26054 * 28 9 7 51 51 H 1.08998 * 110.36847 * 323.04990 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1075 -1.3948 5 1 1.5043 2.6199 0.8030 6 1 3.5965 1.4121 0.5918 7 6 2.0103 -1.2021 -0.0005 8 1 3.0865 -1.2043 0.0900 9 7 1.3305 -2.3852 -0.1158 10 6 -0.1156 -2.5279 -0.3564 11 6 -0.4206 -4.0385 -0.4380 12 6 0.9570 -4.6519 -0.8032 13 1 1.1410 -4.5899 -1.8757 14 6 1.0601 -6.0981 -0.3147 15 7 2.3828 -6.6329 -0.6478 16 6 2.7019 -7.8987 -0.3124 17 8 1.9298 -8.5651 0.3438 18 6 4.0181 -8.4858 -0.7526 19 7 4.3553 -7.9832 -2.0868 20 6 3.4846 -8.1357 -3.1042 21 7 3.7495 -7.5861 -4.3059 22 8 2.4603 -8.7693 -2.9379 23 6 3.9074 -10.0111 -0.7952 24 6 5.2435 -10.6072 -1.2428 25 6 6.3391 -10.2029 -0.2542 26 6 6.4498 -8.6775 -0.2115 27 6 5.1136 -8.0815 0.2360 28 6 1.9251 -3.7307 -0.0196 29 1 -0.4850 0.8400 -0.0004 30 1 -0.3842 -2.0441 -1.2956 31 1 -0.6740 -2.0809 0.4661 32 1 -1.1528 -4.2424 -1.2192 33 1 -0.7687 -4.4169 0.5231 34 1 0.9178 -6.1278 0.7656 35 1 0.2920 -6.7009 -0.7990 36 1 3.0285 -6.0763 -1.1103 37 1 5.2050 -7.5405 -2.2378 38 1 4.5665 -7.0803 -4.4384 39 1 3.1231 -7.6962 -5.0383 40 1 3.6566 -10.3852 0.1974 41 1 3.1272 -10.2993 -1.4998 42 1 5.4939 -10.2331 -2.2355 43 1 5.1645 -11.6939 -1.2736 44 1 7.2910 -10.6272 -0.5733 45 1 6.0886 -10.5769 0.7386 46 1 6.7002 -8.3035 -1.2043 47 1 7.2300 -8.3894 0.4931 48 1 5.1924 -6.9947 0.2660 49 1 4.8633 -8.4554 1.2287 50 1 1.9872 -4.0445 1.0224 51 1 2.9140 -3.7422 -0.4779 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266537547.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:13 Heat of formation + Delta-G solvation = -85.783547 kcal Electronic energy + Delta-G solvation = -31300.886504 eV Core-core repulsion = 27233.808621 eV Total energy + Delta-G solvation = -4067.077883 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.21015 -40.17702 -39.38487 -38.57483 -36.08675 -35.06566 -34.45130 -33.97940 -31.86409 -31.57443 -30.65514 -29.82152 -27.37038 -25.65747 -24.11865 -23.68504 -22.76370 -22.09542 -21.48595 -21.14366 -20.17048 -19.33494 -18.95720 -18.49986 -17.71134 -17.27863 -16.91975 -16.60928 -16.08127 -15.99160 -15.83084 -15.61061 -15.41701 -15.20978 -14.87042 -14.62934 -14.58232 -14.01285 -13.86299 -13.74900 -13.43592 -13.34075 -13.23063 -13.12549 -13.01436 -12.77850 -12.65103 -12.11258 -12.00868 -11.96832 -11.86332 -11.73340 -11.60137 -11.47907 -11.45425 -11.33292 -11.22459 -10.80468 -10.72343 -10.60884 -10.07263 -9.96658 -8.89800 -7.83856 -5.21304 1.46934 1.48569 1.48836 1.57908 1.91843 2.10920 2.30369 2.50226 3.33820 3.52328 3.57348 3.61725 3.68305 3.74907 3.82728 3.98503 3.99485 4.15557 4.24297 4.27198 4.39748 4.48873 4.52915 4.55873 4.67323 4.68328 4.76288 4.79868 4.87728 5.01899 5.02652 5.03178 5.14839 5.18745 5.22749 5.28812 5.33206 5.38523 5.42944 5.44299 5.46706 5.55460 5.64882 5.75527 5.90690 6.05830 6.19629 6.52728 7.08969 7.10798 7.22008 7.69293 7.77028 8.43115 9.26336 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015850 B = 0.002785 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.115042 B =10051.113433 C =10440.641020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.069 4.069 3 Si 0.980 3.020 4 H -0.287 1.287 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.241 4.241 8 H 0.087 0.913 9 N -0.627 5.627 10 C 0.182 3.818 11 C -0.124 4.124 12 C -0.093 4.093 13 H 0.084 0.916 14 C 0.146 3.854 15 N -0.709 5.709 16 C 0.514 3.486 17 O -0.582 6.582 18 C 0.195 3.805 19 N -0.720 5.720 20 C 0.699 3.301 21 N -0.847 5.847 22 O -0.630 6.630 23 C -0.113 4.113 24 C -0.106 4.106 25 C -0.120 4.120 26 C -0.110 4.110 27 C -0.119 4.119 28 C 0.143 3.857 29 H 0.246 0.754 30 H 0.002 0.998 31 H 0.018 0.982 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.408 0.592 37 H 0.418 0.582 38 H 0.415 0.585 39 H 0.419 0.581 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.016 0.984 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.546 -19.398 -6.906 27.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.808 3.192 4 H -0.214 1.214 5 H -0.225 1.225 6 H -0.188 1.188 7 C -0.370 4.370 8 H 0.105 0.895 9 N -0.353 5.353 10 C 0.057 3.943 11 C -0.162 4.162 12 C -0.112 4.112 13 H 0.103 0.897 14 C 0.022 3.978 15 N -0.360 5.360 16 C 0.300 3.700 17 O -0.461 6.461 18 C 0.104 3.896 19 N -0.381 5.381 20 C 0.397 3.603 21 N -0.416 5.416 22 O -0.510 6.510 23 C -0.152 4.152 24 C -0.144 4.144 25 C -0.157 4.157 26 C -0.147 4.147 27 C -0.157 4.157 28 C 0.018 3.982 29 H 0.055 0.945 30 H 0.020 0.980 31 H 0.036 0.964 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.243 0.757 37 H 0.258 0.742 38 H 0.246 0.754 39 H 0.251 0.749 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.079 0.921 46 H 0.100 0.900 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.097 0.903 50 H 0.034 0.966 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.152 -20.178 -6.134 26.565 hybrid contribution 0.139 1.770 -0.535 1.855 sum 16.291 -18.408 -6.670 25.471 Atomic orbital electron populations 1.70194 1.06502 1.25252 1.58249 1.25709 0.96561 1.01249 1.02703 0.85038 0.77890 0.79024 0.77253 1.21365 1.22509 1.18822 1.19499 0.91364 0.83673 1.42438 0.89513 1.44856 1.04699 1.01223 1.84510 1.20963 0.84633 0.91503 0.97217 1.22712 0.96445 0.95304 1.01778 1.22365 0.96557 0.92135 1.00170 0.89738 1.21081 0.84591 0.92407 0.99744 1.45796 1.16574 1.13647 1.59962 1.21311 0.89014 0.81233 0.78393 1.90652 1.52792 1.61316 1.41315 1.20221 0.91437 0.94729 0.83241 1.44984 1.21814 1.64315 1.07001 1.16232 0.82894 0.79538 0.81670 1.42809 1.28559 1.59031 1.11186 1.91003 1.29248 1.47453 1.83344 1.21695 0.99268 0.92257 1.02007 1.21441 0.93104 1.00154 0.99684 1.21588 0.98690 0.96182 0.99280 1.21535 0.95031 0.95120 1.03042 1.21868 0.93797 1.02593 0.97452 1.21668 0.95706 0.84311 0.96477 0.94485 0.98001 0.96378 0.89997 0.91242 0.92325 0.92472 0.75667 0.74235 0.75440 0.74861 0.91805 0.93010 0.91499 0.91783 0.90036 0.92144 0.89956 0.89398 0.89306 0.90288 0.96583 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.76 10.44 21.65 0.23 -57.53 16 2 C -0.07 -3.93 5.46 84.86 0.46 -3.47 16 3 Si 0.98 45.10 29.56 68.60 2.03 47.13 16 4 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.24 -13.27 10.27 84.03 0.86 -12.41 16 8 H 0.09 4.48 7.83 -2.91 -0.02 4.45 16 9 N -0.63 -31.87 3.40 -691.30 -2.35 -34.22 16 10 C 0.18 9.10 5.41 86.68 0.47 9.57 16 11 C -0.12 -4.63 6.42 31.78 0.20 -4.43 16 12 C -0.09 -3.09 3.11 -9.40 -0.03 -3.12 16 13 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 14 C 0.15 4.56 5.13 86.38 0.44 5.00 16 15 N -0.71 -19.21 4.98 -463.06 -2.30 -21.51 16 16 C 0.51 15.11 5.18 87.66 0.45 15.57 16 17 O -0.58 -22.35 16.09 -3.03 -0.05 -22.40 16 18 C 0.19 3.86 0.58 2.86 0.00 3.86 16 19 N -0.72 -10.19 3.47 -441.45 -1.53 -11.72 16 20 C 0.70 13.81 7.98 179.06 1.43 15.24 16 21 N -0.85 -9.30 8.88 -184.76 -1.64 -10.94 16 22 O -0.63 -19.86 14.46 -3.98 -0.06 -19.92 16 23 C -0.11 -2.54 4.11 30.59 0.13 -2.41 16 24 C -0.11 -1.53 5.77 30.59 0.18 -1.36 16 25 C -0.12 -1.17 5.92 30.59 0.18 -0.99 16 26 C -0.11 -0.85 5.75 30.60 0.18 -0.67 16 27 C -0.12 -1.62 4.78 30.60 0.15 -1.47 16 28 C 0.14 5.59 6.40 86.86 0.56 6.15 16 29 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.00 0.10 7.83 -2.38 -0.02 0.08 16 31 H 0.02 1.03 7.10 -2.39 -0.02 1.01 16 32 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.07 2.49 8.04 -2.39 -0.02 2.47 16 34 H 0.06 1.96 8.10 -2.38 -0.02 1.94 16 35 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.41 9.17 7.82 -92.71 -0.72 8.45 16 37 H 0.42 2.64 7.19 -92.71 -0.67 1.97 16 38 H 0.41 1.50 8.85 -92.71 -0.82 0.68 16 39 H 0.42 4.56 8.93 -92.71 -0.83 3.73 16 40 H 0.06 1.60 7.87 -2.39 -0.02 1.58 16 41 H 0.05 1.55 6.36 -2.39 -0.02 1.53 16 42 H 0.07 0.89 7.60 -2.38 -0.02 0.87 16 43 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.06 0.67 8.14 -2.38 -0.02 0.66 16 46 H 0.08 0.34 6.77 -2.39 -0.02 0.33 16 47 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.02 0.66 8.00 -2.39 -0.02 0.64 16 51 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -82.62 392.87 -2.09 -84.71 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -2.07 Total: 21.34 kcal Atomic # 6 Polarization: 19.41 SS G_CDS: 5.66 Total: 25.07 kcal Atomic # 7 Polarization: -128.32 SS G_CDS: -7.60 Total: -135.93 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -0.11 Total: -42.32 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -82.62 -2.09 -84.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266537547.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.073 kcal (2) G-P(sol) polarization free energy of solvation -82.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds