Wall clock time and date at job start Tue Mar 31 2020 22:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99562 * 2 1 4 4 H 1.48496 * 109.47098 * 270.00120 * 3 2 1 5 5 H 1.48498 * 109.47164 * 30.00027 * 3 2 1 6 6 H 1.48497 * 109.47117 * 149.99942 * 3 2 1 7 7 C 1.38809 * 120.00358 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00005 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00151 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00063 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46885 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.46878 * 304.99906 * 11 10 9 13 13 C 1.52998 * 109.47207 * 65.00538 * 11 10 9 14 14 C 1.53001 * 109.46707 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47381 * 299.99593 * 14 13 11 16 16 C 1.52999 * 109.46913 * 60.00113 * 15 14 13 17 17 C 1.53001 * 109.47504 * 299.99933 * 16 15 14 18 18 H 1.08994 * 109.46878 * 300.00393 * 17 16 15 19 19 N 1.46492 * 109.47218 * 179.97438 * 17 16 15 20 20 C 1.34784 * 119.99500 * 85.00520 * 19 17 16 21 21 O 1.21278 * 120.00112 * 359.97438 * 20 19 17 22 22 C 1.50704 * 119.99670 * 180.02562 * 20 19 17 23 23 N 1.46505 * 109.46804 * 179.97438 * 22 20 19 24 24 C 1.46382 * 119.33000 * 89.99972 * 23 22 20 25 25 C 1.53236 * 109.15464 * 150.93968 * 24 23 22 26 26 C 1.53241 * 108.71544 * 55.38786 * 25 24 23 27 27 N 1.46418 * 109.14951 * 304.83640 * 26 25 24 28 28 C 1.34132 * 119.32794 * 270.01863 * 23 22 20 29 29 O 1.21583 * 118.70045 * 0.57404 * 28 23 22 30 30 H 0.96996 * 120.00810 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99422 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47051 * 60.00482 * 10 9 7 33 33 H 1.09004 * 109.47279 * 300.00465 * 10 9 7 34 34 H 1.08995 * 109.46479 * 299.99818 * 13 11 10 35 35 H 1.08998 * 109.47067 * 59.99544 * 13 11 10 36 36 H 1.09000 * 109.47271 * 60.00474 * 14 13 11 37 37 H 1.09001 * 109.46680 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.47072 * 180.02562 * 15 14 13 39 39 H 1.09003 * 109.47012 * 300.00260 * 15 14 13 40 40 H 1.08996 * 109.47049 * 179.97438 * 16 15 14 41 41 H 1.09003 * 109.47162 * 60.00238 * 16 15 14 42 42 H 0.97000 * 120.00787 * 265.00519 * 19 17 16 43 43 H 1.08996 * 109.47566 * 59.99959 * 22 20 19 44 44 H 1.08996 * 109.46996 * 299.99628 * 22 20 19 45 45 H 1.09000 * 109.52104 * 31.03231 * 24 23 22 46 46 H 1.09001 * 109.57532 * 270.87637 * 24 23 22 47 47 H 1.09002 * 109.62275 * 175.20306 * 25 24 23 48 48 H 1.09001 * 109.62029 * 295.57406 * 25 24 23 49 49 H 1.08992 * 109.52656 * 64.51571 * 26 25 24 50 50 H 1.09002 * 109.52466 * 184.71307 * 26 25 24 51 51 H 0.96997 * 119.23974 * 208.83927 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 2.0583 -3.6567 0.0016 11 6 1.0641 -4.8197 0.0022 12 1 0.3803 -4.7126 0.8443 13 6 0.2689 -4.8116 -1.3048 14 6 -0.7248 -5.9750 -1.3043 15 6 0.0366 -7.2961 -1.1789 16 6 0.8319 -7.3042 0.1282 17 6 1.8256 -6.1408 0.1278 18 1 2.5094 -6.2475 -0.7143 19 7 2.5866 -6.1483 1.3795 20 6 3.6867 -6.9185 1.4948 21 8 4.0461 -7.6058 0.5624 22 6 4.4692 -6.9266 2.7827 23 7 5.6100 -7.8369 2.6551 24 6 6.8878 -7.3205 2.1616 25 6 8.0299 -8.1453 2.7643 26 6 7.7941 -9.6239 2.4380 27 7 6.4649 -10.0143 2.9119 28 6 5.4624 -9.1267 2.9925 29 8 4.3767 -9.5065 3.3866 30 1 -0.4851 0.8399 -0.0004 31 1 0.3557 -2.3880 0.0016 32 1 2.6855 -3.7140 0.8911 33 1 2.6843 -3.7148 -0.8888 34 1 -0.2732 -3.8702 -1.3944 35 1 0.9527 -4.9186 -2.1468 36 1 -1.4088 -5.8683 -0.4623 37 1 -1.2917 -5.9689 -2.2354 38 1 -0.6714 -8.1249 -1.1790 39 1 0.7204 -7.4027 -2.0209 40 1 1.3739 -8.2455 0.2178 41 1 0.1480 -7.1975 0.9703 42 1 2.2990 -5.5989 2.1254 43 1 3.8264 -7.2622 3.5964 44 1 4.8292 -5.9201 2.9954 45 1 6.9970 -6.2768 2.4563 46 1 6.9173 -7.3971 1.0747 47 1 8.9794 -7.8230 2.3368 48 1 8.0498 -8.0077 3.8454 49 1 7.8510 -9.7725 1.3598 50 1 8.5532 -10.2313 2.9310 51 1 6.3073 -10.9343 3.1757 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268763842.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:39 Heat of formation + Delta-G solvation = -65.353195 kcal Electronic energy + Delta-G solvation = -30513.166342 eV Core-core repulsion = 26446.974386 eV Total energy + Delta-G solvation = -4066.191956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.98061 -39.79842 -38.06616 -36.63113 -35.05699 -34.59654 -34.00453 -31.87596 -31.37297 -29.87078 -29.51537 -27.84111 -25.76297 -25.12613 -23.41435 -22.98900 -22.13338 -20.60497 -20.42539 -19.82402 -19.03845 -17.79453 -17.48820 -17.39529 -16.96571 -16.13383 -15.80290 -15.08679 -14.97737 -14.68874 -14.56742 -14.27111 -14.22853 -14.03568 -14.00657 -13.70226 -13.38680 -13.26532 -13.03066 -12.66278 -12.62112 -12.32514 -11.99801 -11.79271 -11.74787 -11.60630 -11.47572 -11.03703 -10.87932 -10.87033 -10.68118 -10.37230 -10.27890 -10.21803 -10.07666 -9.95976 -9.86537 -9.62520 -9.35115 -8.90133 -8.77825 -8.74080 -6.91506 -5.77154 -3.05361 2.36711 2.75860 3.00210 3.35310 3.42474 3.47565 3.49194 3.59879 4.27790 4.40905 4.56978 4.65687 4.77325 4.84821 4.90348 4.99982 5.02330 5.13445 5.16731 5.20552 5.28410 5.30905 5.31504 5.42181 5.58662 5.64318 5.68269 5.69903 5.73525 5.80902 5.95417 5.99230 6.15289 6.21453 6.25413 6.31012 6.32433 6.34698 6.44224 6.59774 6.65161 6.71669 6.81390 6.83502 6.94265 7.58946 7.65294 7.69203 8.34696 8.42009 8.42430 9.53172 10.11607 10.46365 11.45751 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.002891 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.276181 B = 9682.500743 C =11715.545443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.160 3.840 11 C -0.100 4.100 12 H 0.075 0.925 13 C -0.106 4.106 14 C -0.121 4.121 15 C -0.114 4.114 16 C -0.126 4.126 17 C 0.157 3.843 18 H 0.085 0.915 19 N -0.719 5.719 20 C 0.499 3.501 21 O -0.537 6.537 22 C 0.111 3.889 23 N -0.604 5.604 24 C 0.111 3.889 25 C -0.151 4.151 26 C 0.110 3.890 27 N -0.738 5.738 28 C 0.718 3.282 29 O -0.597 6.597 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.019 0.981 33 H 0.017 0.983 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.402 0.598 43 H 0.115 0.885 44 H 0.110 0.890 45 H 0.084 0.916 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.077 0.923 49 H 0.065 0.935 50 H 0.082 0.918 51 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.756 -19.214 5.357 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.032 3.968 11 C -0.119 4.119 12 H 0.093 0.907 13 C -0.145 4.145 14 C -0.159 4.159 15 C -0.152 4.152 16 C -0.164 4.164 17 C 0.052 3.948 18 H 0.103 0.897 19 N -0.371 5.371 20 C 0.283 3.717 21 O -0.413 6.413 22 C -0.017 4.017 23 N -0.340 5.340 24 C -0.012 4.012 25 C -0.190 4.190 26 C -0.015 4.015 27 N -0.396 5.396 28 C 0.419 3.581 29 O -0.476 6.476 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.236 0.764 43 H 0.133 0.867 44 H 0.127 0.873 45 H 0.103 0.897 46 H 0.089 0.911 47 H 0.116 0.884 48 H 0.096 0.904 49 H 0.083 0.917 50 H 0.101 0.899 51 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 12.644 -19.594 4.843 23.817 hybrid contribution 0.108 0.961 0.324 1.020 sum 12.751 -18.633 5.167 23.162 Atomic orbital electron populations 1.69649 1.05077 1.25622 1.57881 1.24722 0.95503 0.97625 1.03134 0.86207 0.78626 0.83950 0.77510 1.21772 1.21803 1.20822 1.19211 0.90966 0.84219 1.42507 0.91345 1.42375 1.05837 0.99894 1.89429 1.20651 0.93030 0.85328 0.97768 1.21595 0.97714 0.93420 0.99181 0.90684 1.21486 0.97650 0.98790 0.96525 1.21597 0.98073 0.94566 1.01636 1.21482 0.98723 0.97608 0.97429 1.21883 0.97860 0.98566 0.98139 1.20960 0.92571 0.94704 0.86566 0.89685 1.46067 1.27612 1.46147 1.17229 1.21108 0.80971 0.79447 0.90128 1.90668 1.68791 1.41345 1.40499 1.21231 0.88802 0.94839 0.96811 1.46266 1.11341 1.07431 1.68937 1.21635 0.81674 0.98455 0.99413 1.22195 0.99331 0.94945 1.02515 1.21524 0.84350 0.95780 0.99835 1.44879 1.10371 1.12438 1.71903 1.15311 0.83758 0.80841 0.78231 1.90950 1.24783 1.77471 1.54395 0.93532 0.78211 0.96372 0.96533 0.90270 0.92137 0.92018 0.92157 0.92238 0.92033 0.91877 0.91917 0.76369 0.86681 0.87250 0.89716 0.91093 0.88423 0.90420 0.91658 0.89936 0.74951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.87 13.06 55.49 0.72 -27.14 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.73 -17.96 5.33 -59.91 -0.32 -18.28 16 10 C 0.16 3.13 5.56 -4.04 -0.02 3.10 16 11 C -0.10 -1.57 1.80 -90.61 -0.16 -1.74 16 12 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 13 C -0.11 -1.66 5.08 -26.73 -0.14 -1.79 16 14 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 15 C -0.11 -1.42 5.92 -26.73 -0.16 -1.58 16 16 C -0.13 -1.70 5.49 -26.73 -0.15 -1.85 16 17 C 0.16 2.27 1.90 -67.93 -0.13 2.14 16 18 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 19 N -0.72 -9.49 4.30 -53.80 -0.23 -9.72 16 20 C 0.50 7.07 7.86 -10.98 -0.09 6.98 16 21 O -0.54 -9.53 16.09 5.56 0.09 -9.44 16 22 C 0.11 1.22 5.84 -5.19 -0.03 1.19 16 23 N -0.60 -6.85 2.30 -181.15 -0.42 -7.27 16 24 C 0.11 0.90 6.55 -3.98 -0.03 0.87 16 25 C -0.15 -0.80 6.19 -26.48 -0.16 -0.97 16 26 C 0.11 0.64 7.22 -3.96 -0.03 0.61 16 27 N -0.74 -6.87 5.58 -65.50 -0.37 -7.24 16 28 C 0.72 9.47 8.18 -88.06 -0.72 8.75 16 29 O -0.60 -10.22 16.50 5.29 0.09 -10.13 16 30 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.38 9.90 6.85 -40.82 -0.28 9.62 16 32 H 0.02 0.35 7.30 -51.93 -0.38 -0.03 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 1.42 7.18 -51.93 -0.37 1.05 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.40 4.59 8.39 -40.82 -0.34 4.25 16 43 H 0.12 1.28 7.31 -51.93 -0.38 0.90 16 44 H 0.11 0.87 7.86 -51.93 -0.41 0.47 16 45 H 0.08 0.55 7.87 -51.93 -0.41 0.14 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 51 H 0.41 3.32 8.88 -40.82 -0.36 2.96 16 LS Contribution 402.40 15.07 6.06 6.06 Total: -1.00 -36.45 402.40 -10.40 -46.85 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -8.79 Total: 12.36 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -2.22 Total: 6.80 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -0.61 Total: -69.65 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: 0.18 Total: -19.57 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.45 -10.40 -46.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268763842.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.502 kcal (2) G-P(sol) polarization free energy of solvation -36.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds