Wall clock time and date at job start Tue Mar 31 2020 22:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00010 * 2 1 4 4 H 1.48498 * 109.47123 * 269.99833 * 3 2 1 5 5 H 1.48497 * 109.47329 * 29.99998 * 3 2 1 6 6 H 1.48506 * 109.46940 * 149.99710 * 3 2 1 7 7 C 1.38814 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99704 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99891 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99477 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46883 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.46744 * 55.00126 * 11 10 9 13 13 C 1.52995 * 109.47234 * 295.00505 * 11 10 9 14 14 C 1.52996 * 109.47236 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47461 * 59.99859 * 14 13 11 16 16 C 1.53003 * 109.46609 * 300.00382 * 15 14 13 17 17 C 1.52996 * 109.47102 * 175.00371 * 11 10 9 18 18 H 1.08997 * 109.47474 * 60.00037 * 17 11 10 19 19 N 1.46506 * 109.46921 * 300.00089 * 17 11 10 20 20 C 1.34780 * 119.99819 * 155.00496 * 19 17 11 21 21 O 1.21280 * 119.99932 * 359.97438 * 20 19 17 22 22 C 1.50704 * 119.99741 * 180.02562 * 20 19 17 23 23 N 1.46497 * 109.46775 * 179.97438 * 22 20 19 24 24 C 1.46384 * 119.32894 * 269.72490 * 23 22 20 25 25 C 1.53494 * 109.01676 * 150.82702 * 24 23 22 26 26 C 1.53246 * 108.43068 * 55.78605 * 25 24 23 27 27 N 1.46382 * 109.15544 * 304.38872 * 26 25 24 28 28 C 1.34136 * 119.33027 * 89.99743 * 23 22 20 29 29 O 1.21584 * 118.70036 * 0.57132 * 28 23 22 30 30 H 0.97001 * 119.99776 * 0.02562 * 1 2 3 31 31 H 0.96992 * 120.00556 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46891 * 60.00526 * 10 9 7 33 33 H 1.08993 * 109.47378 * 299.99898 * 10 9 7 34 34 H 1.09006 * 109.47389 * 299.99793 * 13 11 10 35 35 H 1.09003 * 109.47743 * 59.99455 * 13 11 10 36 36 H 1.09000 * 109.47315 * 179.97438 * 14 13 11 37 37 H 1.08997 * 109.46920 * 299.99564 * 14 13 11 38 38 H 1.09001 * 109.47049 * 59.99481 * 15 14 13 39 39 H 1.08992 * 109.47282 * 180.02562 * 15 14 13 40 40 H 1.09007 * 109.46960 * 179.97438 * 16 15 14 41 41 H 1.08996 * 109.47370 * 299.99482 * 16 15 14 42 42 H 0.97001 * 120.00277 * 335.00154 * 19 17 11 43 43 H 1.09002 * 109.47064 * 299.99496 * 22 20 19 44 44 H 1.08997 * 109.47007 * 59.99577 * 22 20 19 45 45 H 1.09002 * 109.52012 * 270.86889 * 24 23 22 46 46 H 1.08999 * 109.52583 * 31.05733 * 24 23 22 47 47 H 1.08996 * 109.80332 * 296.04285 * 25 24 23 48 48 H 1.09000 * 109.73197 * 175.49253 * 25 24 23 49 49 H 1.08992 * 109.52708 * 184.47730 * 26 25 24 50 50 H 1.09008 * 109.51732 * 64.28428 * 26 25 24 51 51 H 0.96998 * 119.32419 * 209.03697 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1120 -2.4709 0.0011 11 6 5.6163 -2.1914 0.0009 12 1 5.8658 -1.5447 0.8422 13 6 6.0064 -1.4999 -1.3070 14 6 7.5107 -1.2209 -1.3075 15 6 8.2742 -2.5407 -1.1810 16 6 7.8841 -3.2322 0.1270 17 6 6.3803 -3.5109 0.1277 18 1 6.1308 -4.1575 -0.7135 19 7 6.0068 -4.1729 1.3801 20 6 6.1245 -5.5106 1.4964 21 8 6.5392 -6.1661 0.5641 22 6 5.7398 -6.1917 2.7845 23 7 5.9575 -7.6348 2.6577 24 6 4.8693 -8.4839 2.1700 25 6 5.4682 -9.7005 1.4507 26 6 6.4199 -10.4144 2.4166 27 7 7.4221 -9.4612 2.8959 28 6 7.1480 -8.1519 2.9960 29 8 8.0128 -7.4045 3.4102 30 1 -0.4850 0.8401 -0.0004 31 1 3.8646 -0.3622 -0.0004 32 1 3.8484 -3.0434 -0.8882 33 1 3.8491 -3.0415 0.8918 34 1 5.7569 -2.1465 -2.1483 35 1 5.4621 -0.5598 -1.3974 36 1 7.7886 -0.7287 -2.2395 37 1 7.7606 -0.5745 -0.4662 38 1 8.0243 -3.1872 -2.0222 39 1 9.3459 -2.3419 -1.1809 40 1 8.4278 -4.1727 0.2169 41 1 8.1340 -2.5858 0.9683 42 1 5.6748 -3.6487 2.1257 43 1 6.3511 -5.8018 3.5984 44 1 4.6878 -6.0004 2.9965 45 1 4.2619 -8.8168 3.0117 46 1 4.2500 -7.9185 1.4738 47 1 6.0192 -9.3737 0.5688 48 1 4.6708 -10.3811 1.1525 49 1 6.9160 -11.2353 1.8990 50 1 5.8544 -10.8048 3.2629 51 1 8.3022 -9.7830 3.1464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268763843.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:43 Heat of formation + Delta-G solvation = -61.156225 kcal Electronic energy + Delta-G solvation = -30654.676015 eV Core-core repulsion = 26588.666054 eV Total energy + Delta-G solvation = -4066.009962 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.99758 -39.87737 -38.16782 -36.61630 -35.07985 -34.79525 -34.08476 -31.95078 -31.34069 -30.04822 -29.90462 -27.91692 -25.79730 -25.34354 -23.45110 -22.81119 -22.04317 -20.72974 -20.44073 -19.87296 -19.17485 -17.89024 -17.71313 -17.41102 -17.13533 -16.25471 -15.80151 -15.13454 -15.00660 -14.63578 -14.57292 -14.39773 -14.24480 -14.16486 -14.01702 -13.86166 -13.51606 -13.30980 -12.97034 -12.75676 -12.73286 -12.44625 -12.05791 -11.90520 -11.70628 -11.66405 -11.61446 -11.19370 -11.05136 -10.96962 -10.79928 -10.49174 -10.35421 -10.27677 -10.11544 -10.02920 -9.92312 -9.59281 -9.36185 -8.94959 -8.83925 -8.77720 -7.23994 -5.78569 -3.13742 2.36000 2.71208 2.97314 3.33284 3.35288 3.38027 3.43708 3.58250 4.31634 4.45544 4.57316 4.67432 4.71449 4.78588 4.84641 4.89981 5.00518 5.01832 5.10044 5.15216 5.22155 5.27876 5.30614 5.37141 5.50338 5.53512 5.56683 5.59284 5.65811 5.75439 5.78174 5.85434 5.99781 6.08887 6.11129 6.19054 6.22055 6.28721 6.31159 6.46004 6.50579 6.57069 6.66548 6.81055 6.82880 7.57785 7.59006 7.97838 8.29719 8.40595 8.40815 9.19904 9.92320 10.12440 11.39995 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013227 B = 0.002867 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.408490 B = 9765.166863 C =11221.962100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.089 0.911 9 N -0.755 5.755 10 C 0.164 3.836 11 C -0.105 4.105 12 H 0.074 0.926 13 C -0.108 4.108 14 C -0.122 4.122 15 C -0.114 4.114 16 C -0.126 4.126 17 C 0.158 3.842 18 H 0.087 0.913 19 N -0.720 5.720 20 C 0.500 3.500 21 O -0.535 6.535 22 C 0.110 3.890 23 N -0.604 5.604 24 C 0.115 3.885 25 C -0.153 4.153 26 C 0.111 3.889 27 N -0.738 5.738 28 C 0.717 3.283 29 O -0.599 6.599 30 H 0.259 0.741 31 H 0.361 0.639 32 H 0.026 0.974 33 H 0.027 0.973 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.402 0.598 43 H 0.116 0.884 44 H 0.111 0.889 45 H 0.068 0.932 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.096 0.904 49 H 0.082 0.918 50 H 0.064 0.936 51 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.074 -18.281 4.576 24.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.400 5.400 10 C 0.037 3.963 11 C -0.124 4.124 12 H 0.093 0.907 13 C -0.146 4.146 14 C -0.160 4.160 15 C -0.152 4.152 16 C -0.165 4.165 17 C 0.053 3.947 18 H 0.105 0.895 19 N -0.372 5.372 20 C 0.284 3.716 21 O -0.412 6.412 22 C -0.018 4.018 23 N -0.340 5.340 24 C -0.008 4.008 25 C -0.192 4.192 26 C -0.014 4.014 27 N -0.395 5.395 28 C 0.418 3.582 29 O -0.477 6.477 30 H 0.069 0.931 31 H 0.194 0.806 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.236 0.764 43 H 0.134 0.866 44 H 0.128 0.872 45 H 0.086 0.914 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.114 0.886 49 H 0.100 0.900 50 H 0.082 0.918 51 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 15.386 -18.413 4.072 24.338 hybrid contribution 0.530 1.301 0.336 1.444 sum 15.916 -17.112 4.408 23.782 Atomic orbital electron populations 1.69699 1.05115 1.25805 1.57673 1.24667 0.95222 0.97175 1.02113 0.86562 0.79211 0.85032 0.77806 1.21069 1.21761 1.20324 1.19046 0.80681 0.94654 1.42872 0.89332 1.42723 1.03980 1.02197 1.91144 1.20631 0.87844 0.89193 0.98646 1.21652 0.96456 0.95249 0.99038 0.90726 1.21506 0.94966 1.01273 0.96890 1.21603 0.95632 0.97067 1.01650 1.21478 0.99469 0.96766 0.97528 1.21883 0.95843 1.00694 0.98076 1.20912 0.93548 0.93471 0.86776 0.89486 1.46061 1.66893 1.07100 1.17134 1.21123 0.77852 0.82439 0.90182 1.90670 1.45380 1.64616 1.40495 1.21219 1.03735 0.80065 0.96735 1.46292 1.12438 1.06528 1.68746 1.21647 0.89083 0.91697 0.98402 1.22231 1.00212 0.97488 0.99229 1.21530 0.90725 0.91855 0.97299 1.44879 1.17412 1.05616 1.71635 1.15322 0.82323 0.82385 0.78132 1.90946 1.45475 1.57603 1.53718 0.93071 0.80640 0.95598 0.95537 0.91636 0.90995 0.92051 0.92075 0.91884 0.92138 0.91713 0.91927 0.76355 0.86622 0.87154 0.91407 0.89670 0.89853 0.88573 0.89998 0.91787 0.74953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.14 13.97 55.49 0.78 -28.36 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 3 Si 0.88 21.82 27.74 -169.99 -4.71 17.10 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 7 C -0.24 -6.76 10.47 -15.06 -0.16 -6.91 16 8 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 9 N -0.75 -17.34 5.13 -59.90 -0.31 -17.65 16 10 C 0.16 3.04 5.57 -4.04 -0.02 3.02 16 11 C -0.10 -1.53 1.80 -90.62 -0.16 -1.69 16 12 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 13 C -0.11 -1.54 5.08 -26.74 -0.14 -1.67 16 14 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 15 C -0.11 -1.31 5.92 -26.73 -0.16 -1.47 16 16 C -0.13 -1.59 5.49 -26.76 -0.15 -1.74 16 17 C 0.16 2.13 1.90 -67.96 -0.13 2.00 16 18 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 19 N -0.72 -8.98 4.31 -53.83 -0.23 -9.21 16 20 C 0.50 6.78 7.86 -10.98 -0.09 6.70 16 21 O -0.54 -9.12 16.09 5.56 0.09 -9.03 16 22 C 0.11 1.19 5.80 -5.19 -0.03 1.16 16 23 N -0.60 -6.74 2.30 -181.00 -0.42 -7.16 16 24 C 0.11 0.92 6.50 -3.85 -0.03 0.90 16 25 C -0.15 -1.01 6.22 -26.35 -0.16 -1.17 16 26 C 0.11 0.64 7.20 -3.98 -0.03 0.61 16 27 N -0.74 -6.79 5.58 -65.52 -0.37 -7.15 16 28 C 0.72 9.33 8.17 -88.06 -0.72 8.61 16 29 O -0.60 -10.08 16.49 5.29 0.09 -10.00 16 30 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.36 8.10 4.71 -40.82 -0.19 7.90 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.03 0.49 7.30 -51.93 -0.38 0.11 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.14 7.18 -51.93 -0.37 0.76 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.40 4.28 8.39 -40.82 -0.34 3.94 16 43 H 0.12 1.25 7.30 -51.93 -0.38 0.87 16 44 H 0.11 0.87 8.05 -51.93 -0.42 0.45 16 45 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.71 8.06 -51.93 -0.42 0.29 16 47 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 51 H 0.41 3.28 8.88 -40.82 -0.36 2.92 16 LS Contribution 399.57 15.07 6.02 6.02 Total: -1.00 -37.16 399.57 -10.05 -47.21 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -8.77 Total: 11.47 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -2.22 Total: 6.75 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: -0.55 Total: -69.53 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.18 Total: -19.03 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.16 -10.05 -47.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268763843.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.943 kcal (2) G-P(sol) polarization free energy of solvation -37.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds