Wall clock time and date at job start Tue Mar 31 2020 21:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99790 * 2 1 4 4 C 1.52997 * 109.46920 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47127 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.46883 * 180.02562 * 5 4 3 7 7 C 1.46850 * 124.36339 * 269.71508 * 6 5 4 8 8 C 1.54794 * 105.42130 * 163.05313 * 7 6 5 9 9 C 1.53896 * 101.52579 * 25.08288 * 8 7 6 10 10 C 1.53622 * 110.33659 * 216.08703 * 9 8 7 11 11 C 1.55333 * 102.71641 * 216.82485 * 10 9 8 12 12 C 1.54974 * 101.66776 * 34.89074 * 11 10 9 13 13 N 1.46231 * 110.90491 * 96.33381 * 9 8 7 14 14 C 1.34773 * 125.81508 * 299.81662 * 13 9 8 15 15 O 1.21283 * 119.99590 * 359.97438 * 14 13 9 16 16 C 1.50694 * 120.00239 * 180.02562 * 14 13 9 17 17 C 1.53003 * 109.47402 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47039 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00654 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99615 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99486 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00127 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47254 * 89.99688 * 22 20 18 24 24 H 1.48505 * 109.46908 * 209.99867 * 22 20 18 25 25 H 1.48500 * 109.46877 * 329.99726 * 22 20 18 26 26 C 1.34649 * 124.36984 * 90.02385 * 6 5 4 27 27 O 1.21282 * 125.07520 * 0.77813 * 26 6 5 28 28 H 1.09000 * 109.47602 * 299.99914 * 1 2 3 29 29 H 1.09003 * 109.47235 * 60.00167 * 1 2 3 30 30 H 1.09003 * 109.47321 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47554 * 60.00014 * 3 2 1 32 32 H 1.09001 * 109.47106 * 299.99458 * 3 2 1 33 33 H 1.09001 * 109.47502 * 60.00157 * 4 3 2 34 34 H 1.09001 * 109.47289 * 299.99954 * 4 3 2 35 35 H 1.09001 * 109.47002 * 299.99574 * 5 4 3 36 36 H 1.08993 * 109.46955 * 60.00011 * 5 4 3 37 37 H 1.08989 * 110.24322 * 282.17254 * 7 6 5 38 38 H 1.08999 * 110.24010 * 44.16346 * 7 6 5 39 39 H 1.09002 * 111.20046 * 266.95580 * 8 7 6 40 40 H 1.09004 * 110.90468 * 143.07817 * 8 7 6 41 41 H 1.09001 * 110.75987 * 335.13056 * 10 9 8 42 42 H 1.08993 * 110.76140 * 98.52070 * 10 9 8 43 43 H 1.08992 * 110.98607 * 276.79616 * 11 10 9 44 44 H 1.08997 * 111.01644 * 152.99743 * 11 10 9 45 45 H 1.08998 * 110.36210 * 204.55825 * 12 11 10 46 46 H 1.09003 * 110.36713 * 82.24364 * 12 11 10 47 47 H 1.08999 * 109.47293 * 300.00038 * 16 14 13 48 48 H 1.09003 * 109.47316 * 60.00128 * 16 14 13 49 49 H 1.08999 * 109.47030 * 300.00325 * 17 16 14 50 50 H 1.09003 * 109.46678 * 59.99863 * 17 16 14 51 51 H 0.97011 * 119.99685 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1577 2.5824 0.0013 6 7 5.6182 2.4667 0.0013 7 6 6.4449 2.4067 1.2135 8 6 7.8166 1.8595 0.7496 9 6 7.8269 2.2725 -0.7329 10 6 8.5172 1.1948 -1.5826 11 6 9.2758 2.0330 -2.6477 12 6 9.6865 3.2829 -1.8287 13 7 8.5498 3.5300 -0.9192 14 6 8.2322 4.7130 -0.3570 15 8 7.2702 4.7968 0.3768 16 6 9.0717 5.9317 -0.6410 17 6 8.4990 7.1329 0.1142 18 6 9.3390 8.3515 -0.1694 19 1 10.1954 8.2770 -0.8232 20 6 9.0135 9.5619 0.4051 21 7 9.7463 10.6255 0.1572 22 14 7.5319 9.6911 1.5353 23 1 7.9514 9.4219 2.9341 24 1 6.9580 11.0578 1.4449 25 1 6.5084 8.6963 1.1254 26 6 6.3760 2.4076 -1.1101 27 8 5.9527 2.4556 -2.2457 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.8574 0.6436 -0.8891 34 1 3.8567 0.6439 0.8909 35 1 3.8365 3.1235 -0.8887 36 1 3.8357 3.1230 0.8912 37 1 6.5588 3.4023 1.6420 38 1 5.9973 1.7307 1.9421 39 1 7.8642 0.7755 0.8534 40 1 8.6306 2.3381 1.2941 41 1 9.2150 0.6148 -0.9786 42 1 7.7807 0.5449 -2.0551 43 1 8.6168 2.3056 -3.4719 44 1 10.1536 1.4996 -3.0124 45 1 9.8361 4.1369 -2.4893 46 1 10.5925 3.0811 -1.2571 47 1 10.0960 5.7516 -0.3146 48 1 9.0625 6.1380 -1.7113 49 1 7.4749 7.3129 -0.2127 50 1 8.5079 6.9269 1.1845 51 1 9.5175 11.4771 0.5616 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269990719.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:21 Heat of formation + Delta-G solvation = -111.492298 kcal Electronic energy + Delta-G solvation = -30896.450751 eV Core-core repulsion = 26795.965302 eV Total energy + Delta-G solvation = -4100.485449 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.45914 -38.89489 -38.23783 -37.16410 -36.35318 -34.03078 -33.43710 -31.90890 -31.04715 -30.70184 -28.09283 -27.31698 -26.25654 -25.45503 -24.17195 -22.51092 -22.32009 -21.66153 -20.76009 -19.50204 -18.54263 -17.32772 -17.02744 -16.76013 -16.46741 -16.39484 -15.90350 -15.43015 -15.28390 -14.87775 -14.82323 -14.29617 -14.18589 -14.09382 -13.75486 -13.62416 -13.42528 -13.03744 -12.75937 -12.65388 -12.55188 -12.40476 -12.39798 -12.23169 -11.98873 -11.64987 -11.46122 -11.40336 -11.30791 -11.15730 -11.12568 -10.99476 -10.90580 -10.17170 -10.06222 -10.00756 -9.90660 -9.81013 -9.27202 -9.19435 -8.66980 -8.53311 -8.47030 -6.04731 -4.03432 2.37324 2.83161 3.00202 3.32777 3.35067 3.41989 3.52208 3.53720 4.13319 4.24841 4.40243 4.48587 4.62567 4.64592 4.76830 4.83295 4.93732 4.96924 4.97943 5.02456 5.06406 5.13722 5.20389 5.23857 5.30594 5.31458 5.37341 5.41625 5.43488 5.52751 5.57023 5.66785 5.72139 5.74578 5.80589 5.90833 6.00283 6.04901 6.07603 6.14125 6.39215 6.54183 6.65680 6.81060 7.11892 7.32103 7.40719 7.62815 7.77511 8.21046 8.45788 8.56269 8.98304 9.58084 11.08114 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010512 B = 0.003232 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.050223 B = 8662.120400 C =10664.380986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.064 3.936 4 C -0.133 4.133 5 C 0.132 3.868 6 N -0.601 5.601 7 C 0.101 3.899 8 C -0.136 4.136 9 C 0.132 3.868 10 C -0.109 4.109 11 C -0.132 4.132 12 C 0.101 3.899 13 N -0.607 5.607 14 C 0.526 3.474 15 O -0.527 6.527 16 C -0.115 4.115 17 C 0.004 3.996 18 C -0.524 4.524 19 H 0.073 0.927 20 C 0.069 3.931 21 N -0.903 5.903 22 Si 0.878 3.122 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.262 1.262 26 C 0.524 3.476 27 O -0.528 6.528 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.085 0.915 49 H 0.022 0.978 50 H 0.019 0.981 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.276 -24.906 -0.033 26.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.013 4.013 4 C -0.172 4.172 5 C 0.010 3.990 6 N -0.333 5.333 7 C -0.022 4.022 8 C -0.175 4.175 9 C 0.043 3.957 10 C -0.148 4.148 11 C -0.170 4.170 12 C -0.021 4.021 13 N -0.344 5.344 14 C 0.318 3.682 15 O -0.403 6.403 16 C -0.154 4.154 17 C -0.034 4.034 18 C -0.562 4.562 19 H 0.091 0.909 20 C -0.132 4.132 21 N -0.542 5.542 22 Si 0.705 3.295 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.186 1.186 26 C 0.310 3.690 27 O -0.403 6.403 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.092 0.908 47 H 0.105 0.895 48 H 0.104 0.896 49 H 0.041 0.959 50 H 0.037 0.963 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.005 -24.672 -0.143 26.264 hybrid contribution -0.959 0.492 0.663 1.265 sum -9.963 -24.180 0.520 26.157 Atomic orbital electron populations 1.22744 0.80942 1.02737 1.00079 1.87865 1.19785 1.28086 1.95460 1.22430 0.93663 0.84698 1.00522 1.21899 0.93171 0.98341 1.03808 1.21142 0.78513 0.95718 1.03652 1.48032 1.05844 1.71896 1.07533 1.22369 0.89613 1.03223 0.86971 1.22954 0.98329 1.01497 0.94690 1.21017 0.91061 0.87206 0.96442 1.22484 0.99584 0.95921 0.96784 1.22845 1.00744 0.95453 0.97949 1.22424 0.88971 0.98763 0.91974 1.48599 1.29356 1.07168 1.49305 1.21415 0.85417 0.82998 0.78409 1.90584 1.28810 1.84144 1.36752 1.21658 0.98979 0.91793 1.02992 1.19362 0.96852 0.91779 0.95397 1.21095 1.13300 0.91984 1.29850 0.90927 1.24971 0.96419 0.95649 0.96192 1.69914 1.39352 1.00255 1.44636 0.86790 0.83994 0.77302 0.81413 1.20262 1.21456 1.18624 1.20674 0.88540 0.75320 0.84491 1.90673 1.78266 1.50450 1.20942 0.94033 0.93990 0.89636 0.93016 0.92949 0.90748 0.90866 0.90020 0.90039 0.88170 0.91335 0.89481 0.88816 0.89585 0.89759 0.89947 0.89537 0.89780 0.90837 0.89550 0.89634 0.95932 0.96288 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.14 10.70 -35.23 -0.38 -4.52 16 3 C 0.06 0.60 5.94 37.16 0.22 0.82 16 4 C -0.13 -1.39 5.91 -26.73 -0.16 -1.54 16 5 C 0.13 1.59 5.95 -4.04 -0.02 1.57 16 6 N -0.60 -8.35 2.69 -172.40 -0.46 -8.81 16 7 C 0.10 1.22 6.39 -2.91 -0.02 1.20 16 8 C -0.14 -1.45 5.96 -25.32 -0.15 -1.60 16 9 C 0.13 1.70 0.85 -132.41 -0.11 1.58 16 10 C -0.11 -1.05 5.86 -25.17 -0.15 -1.20 16 11 C -0.13 -1.23 7.09 -24.45 -0.17 -1.40 16 12 C 0.10 1.10 6.71 -2.36 -0.02 1.09 16 13 N -0.61 -8.77 2.85 -157.38 -0.45 -9.22 16 14 C 0.53 9.58 7.46 -10.99 -0.08 9.50 16 15 O -0.53 -10.82 12.03 5.56 0.07 -10.75 16 16 C -0.11 -2.23 4.66 -27.88 -0.13 -2.36 16 17 C 0.00 0.10 3.33 -27.88 -0.09 0.01 16 18 C -0.52 -14.92 9.66 -34.44 -0.33 -15.26 16 19 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 20 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 21 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 22 Si 0.88 22.45 27.47 -169.99 -4.67 17.78 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.26 -6.67 6.54 56.52 0.37 -6.30 16 26 C 0.52 8.26 6.20 -11.13 -0.07 8.19 16 27 O -0.53 -9.90 17.42 5.56 0.10 -9.80 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.10 7.93 -51.93 -0.41 0.69 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.10 1.49 5.90 -51.94 -0.31 1.19 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.69 7.83 -51.93 -0.41 0.28 16 40 H 0.09 1.02 8.07 -51.93 -0.42 0.60 16 41 H 0.09 0.61 7.81 -51.93 -0.41 0.21 16 42 H 0.08 0.84 7.78 -51.93 -0.40 0.44 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.08 0.93 7.50 -51.93 -0.39 0.54 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 48 H 0.09 1.61 7.86 -51.93 -0.41 1.20 16 49 H 0.02 0.59 7.16 -51.93 -0.37 0.22 16 50 H 0.02 0.47 7.53 -51.93 -0.39 0.08 16 51 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 403.84 15.07 6.09 6.09 Total: -1.00 -36.29 403.84 -8.20 -44.49 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -9.00 Total: -1.99 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -0.27 Total: 3.87 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -0.14 Total: -45.16 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.21 Total: -25.07 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.67 Total: 17.78 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.29 -8.20 -44.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269990719.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.003 kcal (2) G-P(sol) polarization free energy of solvation -36.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds