Wall clock time and date at job start Tue Mar 31 2020 21:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99790 * 2 1 4 4 C 1.52997 * 109.46920 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47127 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.46883 * 180.02562 * 5 4 3 7 7 C 1.46850 * 124.36339 * 269.71508 * 6 5 4 8 8 C 1.54794 * 105.42130 * 163.05313 * 7 6 5 9 9 C 1.53896 * 101.52579 * 25.08288 * 8 7 6 10 10 C 1.53622 * 110.33659 * 216.08703 * 9 8 7 11 11 C 1.55333 * 102.71641 * 216.82485 * 10 9 8 12 12 C 1.54974 * 101.66776 * 34.89074 * 11 10 9 13 13 N 1.46231 * 110.90491 * 96.33381 * 9 8 7 14 14 C 1.34773 * 125.81508 * 299.81662 * 13 9 8 15 15 O 1.21283 * 119.99590 * 359.97438 * 14 13 9 16 16 C 1.50694 * 120.00239 * 180.02562 * 14 13 9 17 17 C 1.53003 * 109.47402 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47039 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00654 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99615 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99486 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00127 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47254 * 89.99688 * 22 20 18 24 24 H 1.48505 * 109.46908 * 209.99867 * 22 20 18 25 25 H 1.48500 * 109.46877 * 329.99726 * 22 20 18 26 26 C 1.34649 * 124.36984 * 90.02385 * 6 5 4 27 27 O 1.21282 * 125.07520 * 0.77813 * 26 6 5 28 28 H 1.09000 * 109.47602 * 299.99914 * 1 2 3 29 29 H 1.09003 * 109.47235 * 60.00167 * 1 2 3 30 30 H 1.09003 * 109.47321 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47554 * 60.00014 * 3 2 1 32 32 H 1.09001 * 109.47106 * 299.99458 * 3 2 1 33 33 H 1.09001 * 109.47502 * 60.00157 * 4 3 2 34 34 H 1.09001 * 109.47289 * 299.99954 * 4 3 2 35 35 H 1.09001 * 109.47002 * 299.99574 * 5 4 3 36 36 H 1.08993 * 109.46955 * 60.00011 * 5 4 3 37 37 H 1.08989 * 110.24322 * 282.17254 * 7 6 5 38 38 H 1.08999 * 110.24010 * 44.16346 * 7 6 5 39 39 H 1.09002 * 111.20046 * 266.95580 * 8 7 6 40 40 H 1.09004 * 110.90468 * 143.07817 * 8 7 6 41 41 H 1.09001 * 110.75987 * 335.13056 * 10 9 8 42 42 H 1.08993 * 110.76140 * 98.52070 * 10 9 8 43 43 H 1.08992 * 110.98607 * 276.79616 * 11 10 9 44 44 H 1.08997 * 111.01644 * 152.99743 * 11 10 9 45 45 H 1.08998 * 110.36210 * 204.55825 * 12 11 10 46 46 H 1.09003 * 110.36713 * 82.24364 * 12 11 10 47 47 H 1.08999 * 109.47293 * 300.00038 * 16 14 13 48 48 H 1.09003 * 109.47316 * 60.00128 * 16 14 13 49 49 H 1.08999 * 109.47030 * 300.00325 * 17 16 14 50 50 H 1.09003 * 109.46678 * 59.99863 * 17 16 14 51 51 H 0.97011 * 119.99685 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1577 2.5824 0.0013 6 7 5.6182 2.4667 0.0013 7 6 6.4449 2.4067 1.2135 8 6 7.8166 1.8595 0.7496 9 6 7.8269 2.2725 -0.7329 10 6 8.5172 1.1948 -1.5826 11 6 9.2758 2.0330 -2.6477 12 6 9.6865 3.2829 -1.8287 13 7 8.5498 3.5300 -0.9192 14 6 8.2322 4.7130 -0.3570 15 8 7.2702 4.7968 0.3768 16 6 9.0717 5.9317 -0.6410 17 6 8.4990 7.1329 0.1142 18 6 9.3390 8.3515 -0.1694 19 1 10.1954 8.2770 -0.8232 20 6 9.0135 9.5619 0.4051 21 7 9.7463 10.6255 0.1572 22 14 7.5319 9.6911 1.5353 23 1 7.9514 9.4219 2.9341 24 1 6.9580 11.0578 1.4449 25 1 6.5084 8.6963 1.1254 26 6 6.3760 2.4076 -1.1101 27 8 5.9527 2.4556 -2.2457 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.8574 0.6436 -0.8891 34 1 3.8567 0.6439 0.8909 35 1 3.8365 3.1235 -0.8887 36 1 3.8357 3.1230 0.8912 37 1 6.5588 3.4023 1.6420 38 1 5.9973 1.7307 1.9421 39 1 7.8642 0.7755 0.8534 40 1 8.6306 2.3381 1.2941 41 1 9.2150 0.6148 -0.9786 42 1 7.7807 0.5449 -2.0551 43 1 8.6168 2.3056 -3.4719 44 1 10.1536 1.4996 -3.0124 45 1 9.8361 4.1369 -2.4893 46 1 10.5925 3.0811 -1.2571 47 1 10.0960 5.7516 -0.3146 48 1 9.0625 6.1380 -1.7113 49 1 7.4749 7.3129 -0.2127 50 1 8.5079 6.9269 1.1845 51 1 9.5175 11.4771 0.5616 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269990719.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:20 Heat of formation + Delta-G solvation = -136.033616 kcal Electronic energy + Delta-G solvation = -30897.514942 eV Core-core repulsion = 26795.965302 eV Total energy + Delta-G solvation = -4101.549640 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.53086 -40.15491 -39.02678 -38.26924 -37.49624 -35.59606 -34.83071 -33.43665 -32.54132 -31.62384 -29.03918 -28.09094 -28.03621 -26.27623 -25.18133 -23.86003 -23.16753 -22.77745 -22.03462 -20.76079 -19.81054 -19.09885 -18.08870 -17.91588 -17.56912 -17.23600 -16.93707 -16.64478 -16.31212 -16.22404 -15.87755 -15.69880 -15.57861 -15.02729 -14.89766 -14.75375 -14.63926 -14.37090 -14.22528 -13.84281 -13.60176 -13.54911 -13.36402 -13.21897 -13.14414 -12.91737 -12.69984 -12.54217 -12.22876 -12.13197 -12.04809 -12.00283 -11.97136 -11.93738 -11.80447 -11.73580 -11.41790 -11.00818 -10.79542 -10.71832 -10.70157 -9.76874 -9.59458 -8.32951 -6.36019 1.21088 1.31103 1.33511 1.48037 1.58921 1.91251 2.16235 2.33208 2.81288 3.02569 3.21423 3.30946 3.57230 3.74374 3.78988 3.88286 4.00639 4.05970 4.11711 4.17798 4.25029 4.27312 4.34057 4.39863 4.42493 4.45420 4.49631 4.53758 4.56590 4.62728 4.76057 4.77543 4.80994 4.90063 4.92236 4.92689 4.96854 5.02102 5.07337 5.15613 5.28502 5.32040 5.39362 5.42523 5.54669 5.58698 6.05140 6.14087 6.21716 6.41297 6.70126 7.06989 7.17465 7.29090 8.82779 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010512 B = 0.003232 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.050223 B = 8662.120400 C =10664.380986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.065 3.935 4 C -0.118 4.118 5 C 0.128 3.872 6 N -0.602 5.602 7 C 0.096 3.904 8 C -0.126 4.126 9 C 0.124 3.876 10 C -0.102 4.102 11 C -0.125 4.125 12 C 0.091 3.909 13 N -0.604 5.604 14 C 0.524 3.476 15 O -0.558 6.558 16 C -0.108 4.108 17 C 0.012 3.988 18 C -0.529 4.529 19 H 0.048 0.952 20 C 0.013 3.987 21 N -0.943 5.943 22 Si 0.941 3.059 23 H -0.264 1.264 24 H -0.280 1.280 25 H -0.264 1.264 26 C 0.508 3.492 27 O -0.572 6.572 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.124 0.876 40 H 0.095 0.905 41 H 0.124 0.876 42 H 0.079 0.921 43 H 0.056 0.944 44 H 0.124 0.876 45 H 0.078 0.922 46 H 0.104 0.896 47 H 0.105 0.895 48 H 0.088 0.912 49 H 0.003 0.997 50 H 0.015 0.985 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.128 -27.574 1.351 28.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.012 4.012 4 C -0.156 4.156 5 C 0.006 3.994 6 N -0.333 5.333 7 C -0.026 4.026 8 C -0.164 4.164 9 C 0.035 3.965 10 C -0.140 4.140 11 C -0.163 4.163 12 C -0.030 4.030 13 N -0.339 5.339 14 C 0.315 3.685 15 O -0.437 6.437 16 C -0.147 4.147 17 C -0.026 4.026 18 C -0.567 4.567 19 H 0.067 0.933 20 C -0.184 4.184 21 N -0.584 5.584 22 Si 0.765 3.235 23 H -0.189 1.189 24 H -0.206 1.206 25 H -0.189 1.189 26 C 0.294 3.706 27 O -0.452 6.452 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.089 0.911 38 H 0.119 0.881 39 H 0.142 0.858 40 H 0.113 0.887 41 H 0.142 0.858 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.142 0.858 45 H 0.096 0.904 46 H 0.122 0.878 47 H 0.123 0.877 48 H 0.106 0.894 49 H 0.021 0.979 50 H 0.034 0.966 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.838 -27.377 1.248 28.795 hybrid contribution -1.005 1.319 0.163 1.666 sum -9.844 -26.058 1.411 27.891 Atomic orbital electron populations 1.22941 0.79314 1.03951 1.00892 1.87819 1.21645 1.28482 1.95635 1.22419 0.92873 0.84696 1.01235 1.21702 0.93908 0.96784 1.03230 1.21222 0.78158 0.96825 1.03185 1.48279 1.06576 1.70608 1.07883 1.22464 0.90773 1.02578 0.86751 1.23016 0.97228 1.03645 0.92530 1.21342 0.89302 0.87147 0.98736 1.22575 0.99820 0.94979 0.96674 1.22839 1.01635 0.94912 0.96898 1.22779 0.88814 0.99448 0.91994 1.48525 1.30051 1.06735 1.48592 1.20962 0.84949 0.83834 0.78778 1.90585 1.29857 1.84860 1.38355 1.21436 0.99955 0.90984 1.02348 1.19167 0.95231 0.92477 0.95739 1.21406 1.12873 0.93563 1.28874 0.93343 1.25815 0.99263 0.95454 0.97917 1.70030 1.41230 1.00949 1.46144 0.85796 0.80385 0.77417 0.79894 1.18851 1.20568 1.18888 1.21339 0.90194 0.74818 0.84238 1.90634 1.79306 1.52618 1.22605 0.92855 0.93532 0.88317 0.91361 0.93192 0.92789 0.89762 0.92338 0.88609 0.91072 0.88148 0.85783 0.88650 0.85819 0.90259 0.92471 0.85830 0.90401 0.87814 0.87716 0.89421 0.97879 0.96638 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.01 113.37 1.25 1.57 16 2 O -0.42 -8.33 10.70 -148.98 -1.59 -9.93 16 3 C 0.06 1.17 5.94 71.98 0.43 1.60 16 4 C -0.12 -2.38 5.91 30.60 0.18 -2.20 16 5 C 0.13 3.11 5.95 86.38 0.51 3.62 16 6 N -0.60 -16.50 2.69 -817.82 -2.20 -18.70 16 7 C 0.10 2.17 6.39 86.93 0.56 2.72 16 8 C -0.13 -2.30 5.96 31.51 0.19 -2.11 16 9 C 0.12 2.94 0.85 3.36 0.00 2.94 16 10 C -0.10 -1.64 5.86 31.60 0.19 -1.46 16 11 C -0.13 -2.00 7.09 32.07 0.23 -1.77 16 12 C 0.09 1.77 6.71 86.83 0.58 2.35 16 13 N -0.60 -16.61 2.85 -770.22 -2.20 -18.81 16 14 C 0.52 18.90 7.46 87.66 0.65 19.56 16 15 O -0.56 -23.05 12.03 -3.04 -0.04 -23.09 16 16 C -0.11 -4.18 4.66 29.85 0.14 -4.04 16 17 C 0.01 0.59 3.33 29.85 0.10 0.69 16 18 C -0.53 -30.68 9.66 25.60 0.25 -30.43 16 19 H 0.05 2.97 7.99 -2.91 -0.02 2.94 16 20 C 0.01 0.79 5.47 84.66 0.46 1.25 16 21 N -0.94 -59.19 13.96 21.45 0.30 -58.89 16 22 Si 0.94 46.73 27.47 68.60 1.88 48.61 16 23 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 24 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.26 -13.14 6.54 99.48 0.65 -12.49 16 26 C 0.51 15.95 6.20 87.62 0.54 16.49 16 27 O -0.57 -22.21 17.42 -3.03 -0.05 -22.26 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.06 1.67 7.93 -2.39 -0.02 1.65 16 36 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 2.08 5.90 -2.39 -0.01 2.07 16 38 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.12 1.36 7.83 -2.39 -0.02 1.34 16 40 H 0.09 1.76 8.07 -2.39 -0.02 1.74 16 41 H 0.12 1.08 7.81 -2.39 -0.02 1.07 16 42 H 0.08 1.41 7.78 -2.39 -0.02 1.39 16 43 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.08 1.62 7.50 -2.39 -0.02 1.60 16 46 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 48 H 0.09 3.33 7.86 -2.39 -0.02 3.31 16 49 H 0.00 0.15 7.16 -2.39 -0.02 0.13 16 50 H 0.02 0.77 7.53 -2.39 -0.02 0.75 16 51 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 Total: -1.00 -82.00 403.84 3.20 -78.80 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.84 Total: 13.47 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 6.26 Total: 10.78 kcal Atomic # 7 Polarization: -92.30 SS G_CDS: -4.10 Total: -96.40 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -1.68 Total: -55.27 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.88 Total: 48.61 kcal Total: -82.00 3.20 -78.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269990719.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.235 kcal (2) G-P(sol) polarization free energy of solvation -81.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds