Wall clock time and date at job start Tue Mar 31 2020 21:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99509 * 2 1 4 4 C 1.53001 * 109.46961 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47055 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.46996 * 180.02562 * 5 4 3 7 7 O 1.21281 * 119.99846 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99910 * 180.02562 * 6 5 4 9 9 C 1.47137 * 125.60505 * 0.02562 * 8 6 5 10 10 C 1.54588 * 107.44757 * 181.01533 * 9 8 6 11 11 C 1.53706 * 102.78601 * 20.80609 * 10 9 8 12 12 C 1.53205 * 111.55288 * 206.03507 * 11 10 9 13 13 C 1.54793 * 101.39162 * 214.16795 * 12 11 10 14 14 N 1.46927 * 105.53869 * 24.17267 * 13 12 11 15 15 C 1.46505 * 124.37780 * 163.22731 * 14 13 12 16 16 C 1.53005 * 109.46767 * 90.00418 * 15 14 13 17 17 C 1.50694 * 109.47030 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00432 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00261 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99800 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00320 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47267 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47458 * 119.99933 * 21 19 17 24 24 H 1.48505 * 109.46894 * 239.99848 * 21 19 17 25 25 C 1.34890 * 111.24453 * 343.25382 * 14 13 12 26 26 O 1.21288 * 125.22033 * 181.23708 * 25 14 13 27 27 C 1.47996 * 125.76609 * 179.97438 * 8 6 5 28 28 H 1.09000 * 109.47745 * 59.99823 * 1 2 3 29 29 H 1.09003 * 109.46737 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47166 * 299.99457 * 1 2 3 31 31 H 1.08995 * 109.46910 * 60.00555 * 3 2 1 32 32 H 1.09002 * 109.47170 * 300.00005 * 3 2 1 33 33 H 1.09008 * 109.46970 * 60.00120 * 4 3 2 34 34 H 1.08997 * 109.47401 * 300.00184 * 4 3 2 35 35 H 1.08994 * 109.46977 * 59.99671 * 5 4 3 36 36 H 1.09002 * 109.46958 * 299.99730 * 5 4 3 37 37 H 1.09002 * 109.87582 * 61.50585 * 9 8 6 38 38 H 1.09002 * 109.87397 * 300.51744 * 9 8 6 39 39 H 1.08998 * 110.75223 * 139.13673 * 10 9 8 40 40 H 1.09009 * 110.74715 * 262.48602 * 10 9 8 41 41 H 1.09003 * 111.04063 * 332.19999 * 12 11 10 42 42 H 1.09004 * 111.04123 * 96.09775 * 12 11 10 43 43 H 1.09001 * 110.23777 * 143.19431 * 13 12 11 44 44 H 1.09008 * 110.23276 * 265.07504 * 13 12 11 45 45 H 1.08993 * 109.47356 * 210.00087 * 15 14 13 46 46 H 1.09004 * 109.47237 * 330.01145 * 15 14 13 47 47 H 1.09005 * 109.47238 * 300.00154 * 16 15 14 48 48 H 1.08998 * 109.46822 * 59.99931 * 16 15 14 49 49 H 0.96998 * 120.00266 * 179.97438 * 20 19 17 50 50 H 1.08996 * 110.31932 * 38.54444 * 27 8 6 51 51 H 1.09004 * 110.44886 * 276.16343 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1576 2.5826 0.0000 6 6 5.6599 2.4637 -0.0013 7 8 6.1815 1.3688 -0.0021 8 7 6.4238 3.5741 -0.0004 9 6 5.9237 4.9579 0.0022 10 6 7.1529 5.8950 -0.0239 11 6 8.2632 4.9844 -0.5720 12 6 9.6489 5.4450 -0.1084 13 6 10.5182 5.0840 -1.3373 14 7 9.5944 5.0606 -2.4796 15 6 10.0126 5.1113 -3.8828 16 6 10.2316 3.6885 -4.4012 17 6 10.6624 3.7406 -5.8444 18 1 10.7688 4.6931 -6.3422 19 6 10.9196 2.5721 -6.5297 20 7 10.7895 1.4121 -5.9237 21 14 11.4542 2.6367 -8.3183 22 1 11.5250 4.0517 -8.7631 23 1 12.7911 2.0058 -8.4585 24 1 10.4707 1.9037 -9.1556 25 6 8.3115 4.9871 -2.0693 26 8 7.3454 4.9317 -2.8005 27 6 7.9034 3.6062 -0.0010 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8465 -0.8900 33 1 3.8567 0.6441 -0.8909 34 1 3.8574 0.6438 0.8891 35 1 3.8362 3.1229 0.8904 36 1 3.8356 3.1240 -0.8896 37 1 5.3388 5.1388 0.9040 38 1 5.3072 5.1308 -0.8800 39 1 6.9808 6.7392 -0.6916 40 1 7.3971 6.2397 0.9810 41 1 9.6621 6.5188 0.0786 42 1 9.9698 4.8923 0.7747 43 1 11.2877 5.8407 -1.4901 44 1 10.9757 4.1041 -1.2007 45 1 9.2384 5.5986 -4.4753 46 1 10.9419 5.6750 -3.9649 47 1 11.0059 3.2010 -3.8087 48 1 9.3023 3.1248 -4.3191 49 1 10.9701 0.5901 -6.4058 50 1 8.2989 2.8158 -0.6388 51 1 8.2869 3.5038 1.0142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270800943.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:57 Heat of formation + Delta-G solvation = -149.847755 kcal Electronic energy + Delta-G solvation = -30005.751700 eV Core-core repulsion = 25903.603034 eV Total energy + Delta-G solvation = -4102.148666 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.29457 -40.62654 -38.92266 -38.19634 -37.48102 -35.73003 -34.73622 -34.05692 -31.97062 -30.49706 -29.66766 -28.56522 -27.18759 -26.73266 -25.38835 -23.96290 -23.44264 -22.74555 -21.83207 -20.33496 -19.97429 -18.73627 -18.32647 -17.54014 -17.39471 -17.22501 -17.14716 -16.81629 -16.61091 -16.24111 -16.08038 -15.68004 -15.47825 -14.92162 -14.88999 -14.52792 -14.46133 -14.35864 -14.01135 -13.84865 -13.78823 -13.61293 -13.17210 -13.07870 -13.02799 -12.96074 -12.90278 -12.64210 -12.55391 -12.41327 -12.07943 -12.01480 -12.00097 -11.94068 -11.80897 -11.67563 -11.42992 -11.00128 -10.68535 -10.62956 -10.60894 -9.73097 -9.56951 -8.28534 -6.42913 1.34709 1.36993 1.48803 1.50838 1.56775 1.88599 2.13234 2.37604 2.83135 3.04783 3.23060 3.28876 3.36486 3.67707 3.84273 3.91753 4.00070 4.09754 4.22512 4.25953 4.29969 4.34910 4.42233 4.42691 4.47341 4.50278 4.55101 4.56760 4.59539 4.61895 4.65043 4.72465 4.79009 4.83069 4.84755 4.94363 4.99601 5.05714 5.10494 5.17699 5.22709 5.26367 5.29334 5.39516 5.55454 5.77624 6.09162 6.23885 6.27797 6.45469 6.73893 7.08037 7.19473 7.28021 8.84002 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009298 B = 0.002775 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.689462 B =10086.430775 C =12328.355848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.426 6.426 3 C 0.066 3.934 4 C -0.103 4.103 5 C -0.118 4.118 6 C 0.515 3.485 7 O -0.596 6.596 8 N -0.619 5.619 9 C 0.095 3.905 10 C -0.095 4.095 11 C -0.107 4.107 12 C -0.096 4.096 13 C 0.086 3.914 14 N -0.622 5.622 15 C 0.144 3.856 16 C 0.023 3.977 17 C -0.543 4.543 18 H 0.071 0.929 19 C -0.005 4.005 20 N -0.936 5.936 21 Si 0.975 3.025 22 H -0.254 1.254 23 H -0.273 1.273 24 H -0.283 1.283 25 C 0.509 3.491 26 O -0.576 6.576 27 C 0.129 3.871 28 H 0.049 0.951 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.042 0.958 34 H 0.064 0.936 35 H 0.138 0.862 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.136 0.864 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.105 0.895 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.095 0.905 47 H -0.004 1.004 48 H -0.037 1.037 49 H 0.264 0.736 50 H 0.028 0.972 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.267 13.065 21.848 28.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.346 6.346 3 C -0.011 4.011 4 C -0.142 4.142 5 C -0.158 4.158 6 C 0.306 3.694 7 O -0.478 6.478 8 N -0.353 5.353 9 C -0.026 4.026 10 C -0.132 4.132 11 C -0.111 4.111 12 C -0.133 4.133 13 C -0.036 4.036 14 N -0.354 5.354 15 C 0.022 3.978 16 C -0.015 4.015 17 C -0.581 4.581 18 H 0.089 0.911 19 C -0.203 4.203 20 N -0.576 5.576 21 Si 0.798 3.202 22 H -0.178 1.178 23 H -0.198 1.198 24 H -0.209 1.209 25 C 0.298 3.702 26 O -0.456 6.456 27 C 0.005 3.995 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.156 0.844 36 H 0.125 0.875 37 H 0.134 0.866 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.154 0.846 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.124 0.876 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.113 0.887 47 H 0.014 0.986 48 H -0.018 1.018 49 H 0.073 0.927 50 H 0.047 0.953 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.377 12.088 21.363 27.954 hybrid contribution 0.278 -0.972 -1.781 2.048 sum -13.099 11.116 19.582 26.050 Atomic orbital electron populations 1.22931 0.79217 1.03738 1.01147 1.87857 1.21808 1.29282 1.95686 1.22561 0.92096 0.84440 1.01965 1.21173 0.94176 0.96213 1.02607 1.21506 0.88286 0.99002 1.06971 1.21091 0.91020 0.82345 0.74927 1.90710 1.76303 1.28180 1.52572 1.48758 1.06788 1.07324 1.72386 1.22405 0.98004 0.78791 1.03399 1.22517 0.90356 0.96182 1.04179 1.21582 1.00898 0.97696 0.90940 1.22605 0.88389 1.05167 0.97175 1.22518 0.93420 1.02743 0.84876 1.48829 1.07653 1.71451 1.07451 1.21339 0.99797 0.97524 0.79148 1.19218 0.93703 0.92806 0.95770 1.21588 1.45958 0.93441 0.97155 0.91097 1.26132 0.95296 0.94887 1.03942 1.70157 1.50057 0.98353 1.39068 0.85259 0.77876 0.79045 0.78015 1.17754 1.19783 1.20874 1.21050 0.82594 0.74853 0.91748 1.90644 1.39912 1.52085 1.62924 1.22036 0.81076 0.94707 1.01635 0.93232 0.89005 0.92361 0.90373 0.92131 0.93918 0.91683 0.84439 0.87514 0.86639 0.92154 0.89508 0.84574 0.85679 0.85664 0.87644 0.92341 0.92792 0.88699 0.98594 1.01845 0.92739 0.95336 0.86532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.43 -9.68 10.70 -148.98 -1.59 -11.27 16 3 C 0.07 1.18 5.94 71.98 0.43 1.61 16 4 C -0.10 -2.48 4.87 30.59 0.15 -2.33 16 5 C -0.12 -2.36 4.89 29.85 0.15 -2.22 16 6 C 0.52 15.73 7.85 87.66 0.69 16.41 16 7 O -0.60 -24.72 16.28 -3.03 -0.05 -24.76 16 8 N -0.62 -16.17 3.35 -812.32 -2.72 -18.89 16 9 C 0.10 1.60 6.23 86.80 0.54 2.15 16 10 C -0.09 -1.33 5.80 31.37 0.18 -1.15 16 11 C -0.11 -2.41 0.67 -52.74 -0.04 -2.45 16 12 C -0.10 -1.34 6.26 31.27 0.20 -1.14 16 13 C 0.09 2.04 7.37 86.91 0.64 2.68 16 14 N -0.62 -22.47 2.95 -818.18 -2.41 -24.89 16 15 C 0.14 6.28 5.88 86.38 0.51 6.79 16 16 C 0.02 1.32 5.30 29.85 0.16 1.47 16 17 C -0.54 -32.26 9.11 25.60 0.23 -32.03 16 18 H 0.07 3.93 7.74 -2.91 -0.02 3.90 16 19 C 0.00 -0.29 5.46 84.65 0.46 0.17 16 20 N -0.94 -60.82 13.29 21.45 0.28 -60.54 16 21 Si 0.97 45.98 29.54 68.60 2.03 48.00 16 22 H -0.25 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 25 C 0.51 18.70 6.77 87.36 0.59 19.29 16 26 O -0.58 -26.77 17.27 -3.05 -0.05 -26.83 16 27 C 0.13 3.42 5.91 86.25 0.51 3.93 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.04 1.32 8.10 -2.38 -0.02 1.30 16 34 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 35 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.09 1.32 8.00 -2.39 -0.02 1.30 16 40 H 0.14 0.67 8.05 -2.38 -0.02 0.65 16 41 H 0.12 0.93 7.96 -2.39 -0.02 0.91 16 42 H 0.13 1.03 7.63 -2.38 -0.02 1.01 16 43 H 0.11 1.93 8.14 -2.39 -0.02 1.92 16 44 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 45 H 0.05 2.50 7.96 -2.39 -0.02 2.48 16 46 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 47 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 48 H -0.04 -2.49 8.14 -2.39 -0.02 -2.51 16 49 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 50 H 0.03 1.06 7.95 -2.39 -0.02 1.04 16 51 H 0.12 2.23 7.75 -2.38 -0.02 2.21 16 Total: -1.00 -96.36 415.55 3.01 -93.34 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.89 Total: 11.04 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 6.65 Total: 14.80 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -4.85 Total: -104.32 kcal Atomic # 8 Polarization: -61.17 SS G_CDS: -1.70 Total: -62.87 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -96.36 3.01 -93.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270800943.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.504 kcal (2) G-P(sol) polarization free energy of solvation -96.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds