Wall clock time and date at job start Tue Mar 31 2020 21:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42907 * 113.99944 * 2 1 4 4 C 1.52997 * 109.47063 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46879 * 180.02562 * 4 3 2 6 6 C 1.50709 * 109.47017 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99784 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00044 * 179.97438 * 6 5 4 9 9 C 1.47656 * 125.81434 * 359.97278 * 8 6 5 10 10 C 1.54970 * 104.85781 * 155.99507 * 9 8 6 11 11 C 1.55326 * 101.67007 * 36.59681 * 10 9 8 12 12 C 1.46227 * 125.81680 * 179.97438 * 8 6 5 13 13 C 1.53915 * 110.88418 * 302.29162 * 12 8 6 14 14 C 1.54638 * 101.58673 * 144.78283 * 13 12 8 15 15 N 1.46847 * 105.50549 * 335.21278 * 14 13 12 16 16 C 1.46504 * 124.36853 * 196.85750 * 15 14 13 17 17 C 1.53004 * 109.46796 * 270.00001 * 16 15 14 18 18 C 1.50699 * 109.46824 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00127 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99851 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99687 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99972 * 179.97438 * 20 18 17 23 23 H 1.48510 * 109.47170 * 90.00333 * 22 20 18 24 24 H 1.48493 * 109.47486 * 210.00456 * 22 20 18 25 25 H 1.48497 * 109.47527 * 330.00724 * 22 20 18 26 26 C 1.34664 * 111.26458 * 16.87948 * 15 14 13 27 27 O 1.21274 * 125.07173 * 179.18848 * 26 15 14 28 28 H 1.09004 * 109.46929 * 299.99402 * 1 2 3 29 29 H 1.08998 * 109.47563 * 59.99864 * 1 2 3 30 30 H 1.09002 * 109.47198 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46852 * 60.00178 * 3 2 1 32 32 H 1.09000 * 109.47306 * 300.00187 * 3 2 1 33 33 H 1.09000 * 109.47404 * 60.00195 * 4 3 2 34 34 H 1.09005 * 109.47333 * 299.99794 * 4 3 2 35 35 H 1.09000 * 109.47083 * 59.99828 * 5 4 3 36 36 H 1.08995 * 109.46954 * 299.99396 * 5 4 3 37 37 H 1.09004 * 110.36042 * 274.84444 * 9 8 6 38 38 H 1.09003 * 110.36003 * 37.14682 * 9 8 6 39 39 H 1.08998 * 110.98959 * 154.69320 * 10 9 8 40 40 H 1.09005 * 110.98660 * 278.50433 * 10 9 8 41 41 H 1.09005 * 110.76373 * 206.80867 * 11 10 9 42 42 H 1.08998 * 110.91843 * 83.49742 * 11 10 9 43 43 H 1.09000 * 110.99918 * 262.85635 * 13 12 8 44 44 H 1.08994 * 111.00079 * 26.70643 * 13 12 8 45 45 H 1.09003 * 110.23355 * 216.20946 * 14 13 12 46 46 H 1.08992 * 110.31353 * 94.26513 * 14 13 12 47 47 H 1.08998 * 109.47169 * 29.99994 * 16 15 14 48 48 H 1.08995 * 109.47119 * 150.00102 * 16 15 14 49 49 H 1.08998 * 109.47255 * 299.99940 * 17 16 15 50 50 H 1.09008 * 109.46939 * 60.00159 * 17 16 15 51 51 H 0.97002 * 119.99620 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1576 2.5825 0.0000 6 6 5.6600 2.4635 -0.0013 7 8 6.1816 1.3686 -0.0021 8 7 6.4239 3.5739 -0.0015 9 6 5.9272 4.9644 -0.0011 10 6 7.0824 5.7988 0.6078 11 6 8.3302 5.0768 0.0297 12 6 7.8858 3.6068 -0.0021 13 6 8.4522 2.8509 1.2131 14 6 9.7334 2.2218 0.6182 15 7 9.4854 2.1171 -0.8254 16 6 10.2595 1.2723 -1.7384 17 6 11.4419 2.0700 -2.2922 18 6 12.2385 1.2008 -3.2309 19 1 11.9319 0.1817 -3.4144 20 6 13.3582 1.7072 -3.8562 21 7 13.7312 2.9484 -3.6331 22 14 14.3460 0.6297 -5.0191 23 1 13.8153 0.7738 -6.3986 24 1 15.7708 1.0471 -4.9908 25 1 14.2372 -0.7886 -4.5927 26 6 8.4549 2.8980 -1.2019 27 8 8.0463 3.0128 -2.3379 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8465 -0.8900 33 1 3.8567 0.6440 -0.8909 34 1 3.8574 0.6437 0.8892 35 1 3.8363 3.1229 0.8904 36 1 3.8357 3.1239 -0.8895 37 1 5.7179 5.2926 -1.0193 38 1 5.0328 5.0474 0.6163 39 1 7.0378 6.8336 0.2681 40 1 7.0703 5.7461 1.6965 41 1 9.1905 5.2063 0.6865 42 1 8.5559 5.4341 -0.9750 43 1 8.6946 3.5391 2.0229 44 1 7.7595 2.0804 1.5515 45 1 9.9009 1.2328 1.0447 46 1 10.5934 2.8642 0.8074 47 1 10.6300 0.3999 -1.2001 48 1 9.6226 0.9480 -2.5613 49 1 11.0714 2.9424 -2.8305 50 1 12.0788 2.3943 -1.4692 51 1 14.5191 3.3045 -4.0728 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270801970.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:05 Heat of formation + Delta-G solvation = -117.459786 kcal Electronic energy + Delta-G solvation = -30508.947172 eV Core-core repulsion = 26408.202953 eV Total energy + Delta-G solvation = -4100.744219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.29367 -39.09320 -38.17385 -37.21883 -35.87470 -33.97891 -33.52031 -32.01616 -31.64825 -29.13509 -28.22010 -27.74635 -26.07425 -25.09617 -24.12302 -22.87858 -22.19185 -21.59790 -20.67420 -19.61417 -18.38406 -17.32168 -16.74635 -16.65296 -16.48786 -16.35794 -15.70740 -15.47837 -15.29308 -15.00716 -14.86045 -14.44646 -14.04358 -13.99029 -13.65088 -13.53425 -13.04345 -12.87789 -12.67969 -12.54476 -12.45823 -12.34928 -12.33675 -12.01697 -11.89209 -11.67472 -11.47314 -11.41297 -11.29542 -11.26432 -11.15539 -10.91318 -10.76124 -10.62893 -9.99902 -9.97195 -9.85002 -9.77951 -9.58686 -9.17439 -8.50325 -8.33880 -7.92543 -5.99520 -4.02268 2.48615 2.65107 3.17967 3.34477 3.39843 3.42969 3.47173 3.65868 4.18567 4.30935 4.44967 4.48535 4.54997 4.65216 4.75538 4.77814 4.79271 4.93754 4.96384 5.04091 5.06332 5.06944 5.09786 5.15529 5.24516 5.31219 5.36693 5.37358 5.41869 5.55197 5.58423 5.72124 5.79854 5.82786 5.86415 5.94292 6.00244 6.06013 6.14458 6.32111 6.57064 6.83475 6.86735 7.07391 7.38668 7.56852 7.71061 7.91060 8.00830 8.10410 8.37987 8.74391 9.04309 9.61382 11.11974 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013516 B = 0.002592 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.139562 B =10800.188279 C =12126.647668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.062 3.938 4 C -0.106 4.106 5 C -0.129 4.129 6 C 0.529 3.471 7 O -0.523 6.523 8 N -0.598 5.598 9 C 0.098 3.902 10 C -0.128 4.128 11 C -0.113 4.113 12 C 0.132 3.868 13 C -0.135 4.135 14 C 0.106 3.894 15 N -0.603 5.603 16 C 0.130 3.870 17 C 0.013 3.987 18 C -0.520 4.520 19 H 0.057 0.943 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.521 3.479 27 O -0.527 6.527 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.020 0.980 50 H 0.017 0.983 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.321 6.135 15.325 28.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.014 4.014 4 C -0.143 4.143 5 C -0.169 4.169 6 C 0.318 3.682 7 O -0.398 6.398 8 N -0.333 5.333 9 C -0.024 4.024 10 C -0.166 4.166 11 C -0.152 4.152 12 C 0.043 3.957 13 C -0.174 4.174 14 C -0.018 4.018 15 N -0.336 5.336 16 C 0.010 3.990 17 C -0.025 4.025 18 C -0.559 4.559 19 H 0.075 0.925 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.198 1.198 26 C 0.305 3.695 27 O -0.403 6.403 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.038 0.962 50 H 0.036 0.964 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.020 5.398 14.614 27.796 hybrid contribution 0.484 -0.177 -0.710 0.877 sum -22.536 5.221 13.904 26.990 Atomic orbital electron populations 1.22743 0.81035 1.02835 0.99887 1.87907 1.19664 1.27969 1.95391 1.22536 0.94063 0.84734 1.00083 1.21235 0.92091 0.95781 1.05239 1.21499 0.91576 0.99434 1.04430 1.20264 0.89064 0.82915 0.75966 1.90764 1.74708 1.25717 1.48659 1.48187 1.04973 1.06400 1.73741 1.22456 0.97605 0.80846 1.01514 1.22807 0.93642 0.99322 1.00873 1.22539 0.98551 0.90528 1.03558 1.21143 0.81493 0.97395 0.95709 1.22940 0.97526 1.00435 0.96501 1.22020 0.96930 1.01709 0.81145 1.48426 1.32477 1.44143 1.08522 1.21802 0.93674 0.92413 0.91095 1.19411 0.91265 0.95890 0.95956 1.21101 1.10075 0.98532 1.26186 0.92472 1.25002 0.97464 0.95079 0.96795 1.69976 1.25609 1.14270 1.43416 0.86542 0.79130 0.80717 0.81311 1.20599 1.21220 1.19799 1.20326 0.80358 0.79660 0.89133 1.90669 1.63390 1.64577 1.21639 0.94137 0.94055 0.89590 0.93307 0.93203 0.90047 0.90204 0.88809 0.88654 0.90750 0.90235 0.89287 0.90219 0.88858 0.89503 0.89328 0.89140 0.90463 0.90949 0.91594 0.91286 0.96169 0.96423 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.09 10.70 -35.23 -0.38 -4.47 16 3 C 0.06 0.52 5.94 37.16 0.22 0.74 16 4 C -0.11 -1.09 4.87 -26.73 -0.13 -1.23 16 5 C -0.13 -1.17 4.72 -27.88 -0.13 -1.30 16 6 C 0.53 7.30 7.28 -10.98 -0.08 7.22 16 7 O -0.52 -9.46 14.42 5.55 0.08 -9.38 16 8 N -0.60 -7.61 2.90 -157.38 -0.46 -8.07 16 9 C 0.10 0.82 6.71 -2.37 -0.02 0.81 16 10 C -0.13 -0.94 7.09 -24.46 -0.17 -1.12 16 11 C -0.11 -1.29 5.97 -25.18 -0.15 -1.44 16 12 C 0.13 1.91 0.72 -132.41 -0.10 1.81 16 13 C -0.14 -1.71 6.05 -25.39 -0.15 -1.87 16 14 C 0.11 1.60 7.36 -2.99 -0.02 1.58 16 15 N -0.60 -12.16 2.94 -172.50 -0.51 -12.67 16 16 C 0.13 3.01 5.88 -4.04 -0.02 2.99 16 17 C 0.01 0.35 5.30 -27.88 -0.15 0.20 16 18 C -0.52 -15.22 9.11 -34.44 -0.31 -15.54 16 19 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -27.40 13.29 55.43 0.74 -26.67 16 22 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.52 10.64 6.08 -11.12 -0.07 10.57 16 27 O -0.53 -12.95 17.62 5.56 0.10 -12.85 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 34 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 35 H 0.09 0.57 7.86 -51.93 -0.41 0.16 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.42 7.51 -51.93 -0.39 0.03 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.91 7.62 -51.93 -0.40 0.52 16 42 H 0.09 1.17 7.90 -51.93 -0.41 0.76 16 43 H 0.09 0.82 7.67 -51.93 -0.40 0.42 16 44 H 0.09 1.25 6.53 -51.93 -0.34 0.91 16 45 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 46 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 48 H 0.07 1.71 7.94 -51.93 -0.41 1.30 16 49 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 50 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 51 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 411.56 15.07 6.20 6.20 Total: -1.00 -38.77 411.56 -8.57 -47.35 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -9.06 Total: -3.02 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -0.27 Total: 6.38 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.23 Total: -47.41 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.20 Total: -26.70 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -38.77 -8.57 -47.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270801970.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.114 kcal (2) G-P(sol) polarization free energy of solvation -38.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds