Wall clock time and date at job start Tue Mar 31 2020 21:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42907 * 113.99944 * 2 1 4 4 C 1.52997 * 109.47063 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46879 * 180.02562 * 4 3 2 6 6 C 1.50709 * 109.47017 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99784 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00044 * 179.97438 * 6 5 4 9 9 C 1.47656 * 125.81434 * 359.97278 * 8 6 5 10 10 C 1.54970 * 104.85781 * 155.99507 * 9 8 6 11 11 C 1.55326 * 101.67007 * 36.59681 * 10 9 8 12 12 C 1.46227 * 125.81680 * 179.97438 * 8 6 5 13 13 C 1.53915 * 110.88418 * 302.29162 * 12 8 6 14 14 C 1.54638 * 101.58673 * 144.78283 * 13 12 8 15 15 N 1.46847 * 105.50549 * 335.21278 * 14 13 12 16 16 C 1.46504 * 124.36853 * 196.85750 * 15 14 13 17 17 C 1.53004 * 109.46796 * 270.00001 * 16 15 14 18 18 C 1.50699 * 109.46824 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00127 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99851 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99687 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99972 * 179.97438 * 20 18 17 23 23 H 1.48510 * 109.47170 * 90.00333 * 22 20 18 24 24 H 1.48493 * 109.47486 * 210.00456 * 22 20 18 25 25 H 1.48497 * 109.47527 * 330.00724 * 22 20 18 26 26 C 1.34664 * 111.26458 * 16.87948 * 15 14 13 27 27 O 1.21274 * 125.07173 * 179.18848 * 26 15 14 28 28 H 1.09004 * 109.46929 * 299.99402 * 1 2 3 29 29 H 1.08998 * 109.47563 * 59.99864 * 1 2 3 30 30 H 1.09002 * 109.47198 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46852 * 60.00178 * 3 2 1 32 32 H 1.09000 * 109.47306 * 300.00187 * 3 2 1 33 33 H 1.09000 * 109.47404 * 60.00195 * 4 3 2 34 34 H 1.09005 * 109.47333 * 299.99794 * 4 3 2 35 35 H 1.09000 * 109.47083 * 59.99828 * 5 4 3 36 36 H 1.08995 * 109.46954 * 299.99396 * 5 4 3 37 37 H 1.09004 * 110.36042 * 274.84444 * 9 8 6 38 38 H 1.09003 * 110.36003 * 37.14682 * 9 8 6 39 39 H 1.08998 * 110.98959 * 154.69320 * 10 9 8 40 40 H 1.09005 * 110.98660 * 278.50433 * 10 9 8 41 41 H 1.09005 * 110.76373 * 206.80867 * 11 10 9 42 42 H 1.08998 * 110.91843 * 83.49742 * 11 10 9 43 43 H 1.09000 * 110.99918 * 262.85635 * 13 12 8 44 44 H 1.08994 * 111.00079 * 26.70643 * 13 12 8 45 45 H 1.09003 * 110.23355 * 216.20946 * 14 13 12 46 46 H 1.08992 * 110.31353 * 94.26513 * 14 13 12 47 47 H 1.08998 * 109.47169 * 29.99994 * 16 15 14 48 48 H 1.08995 * 109.47119 * 150.00102 * 16 15 14 49 49 H 1.08998 * 109.47255 * 299.99940 * 17 16 15 50 50 H 1.09008 * 109.46939 * 60.00159 * 17 16 15 51 51 H 0.97002 * 119.99620 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1576 2.5825 0.0000 6 6 5.6600 2.4635 -0.0013 7 8 6.1816 1.3686 -0.0021 8 7 6.4239 3.5739 -0.0015 9 6 5.9272 4.9644 -0.0011 10 6 7.0824 5.7988 0.6078 11 6 8.3302 5.0768 0.0297 12 6 7.8858 3.6068 -0.0021 13 6 8.4522 2.8509 1.2131 14 6 9.7334 2.2218 0.6182 15 7 9.4854 2.1171 -0.8254 16 6 10.2595 1.2723 -1.7384 17 6 11.4419 2.0700 -2.2922 18 6 12.2385 1.2008 -3.2309 19 1 11.9319 0.1817 -3.4144 20 6 13.3582 1.7072 -3.8562 21 7 13.7312 2.9484 -3.6331 22 14 14.3460 0.6297 -5.0191 23 1 13.8153 0.7738 -6.3986 24 1 15.7708 1.0471 -4.9908 25 1 14.2372 -0.7886 -4.5927 26 6 8.4549 2.8980 -1.2019 27 8 8.0463 3.0128 -2.3379 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8465 -0.8900 33 1 3.8567 0.6440 -0.8909 34 1 3.8574 0.6437 0.8892 35 1 3.8363 3.1229 0.8904 36 1 3.8357 3.1239 -0.8895 37 1 5.7179 5.2926 -1.0193 38 1 5.0328 5.0474 0.6163 39 1 7.0378 6.8336 0.2681 40 1 7.0703 5.7461 1.6965 41 1 9.1905 5.2063 0.6865 42 1 8.5559 5.4341 -0.9750 43 1 8.6946 3.5391 2.0229 44 1 7.7595 2.0804 1.5515 45 1 9.9009 1.2328 1.0447 46 1 10.5934 2.8642 0.8074 47 1 10.6300 0.3999 -1.2001 48 1 9.6226 0.9480 -2.5613 49 1 11.0714 2.9424 -2.8305 50 1 12.0788 2.3943 -1.4692 51 1 14.5191 3.3045 -4.0728 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270801970.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:04 Heat of formation + Delta-G solvation = -145.407357 kcal Electronic energy + Delta-G solvation = -30510.159069 eV Core-core repulsion = 26408.202953 eV Total energy + Delta-G solvation = -4101.956116 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.47377 -40.30346 -38.90793 -38.31776 -37.50318 -35.66376 -34.71495 -33.59826 -32.67631 -30.80234 -29.18489 -28.65551 -27.02473 -26.71863 -25.24325 -23.85695 -23.62034 -22.78767 -21.72067 -20.98105 -19.63664 -18.73626 -18.32801 -17.62799 -17.38722 -17.28241 -16.99479 -16.65513 -16.62487 -16.41108 -15.89680 -15.74461 -15.34595 -14.99928 -14.81925 -14.57155 -14.54279 -14.32875 -14.20441 -13.81816 -13.69041 -13.33386 -13.17168 -13.06737 -13.03709 -12.92133 -12.76618 -12.58842 -12.57636 -12.38567 -12.12810 -12.05958 -11.96879 -11.92368 -11.88322 -11.57982 -11.46042 -10.97338 -10.90833 -10.64168 -10.60838 -9.67429 -9.61662 -8.27704 -6.40648 1.33680 1.35728 1.38550 1.49542 1.58993 1.90214 2.15480 2.38617 2.85713 3.05111 3.20548 3.35807 3.50647 3.65888 3.77501 3.94315 3.95859 4.11148 4.13481 4.16776 4.22170 4.31537 4.45036 4.47945 4.49591 4.52032 4.56551 4.57736 4.59985 4.62615 4.72638 4.75625 4.77322 4.85157 4.86559 4.90011 4.97280 5.08426 5.13217 5.20726 5.24545 5.28685 5.36563 5.39842 5.53452 5.75516 6.10465 6.21710 6.26241 6.46581 6.72717 7.09142 7.15058 7.28580 8.84502 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013516 B = 0.002592 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.139562 B =10800.188279 C =12126.647668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.427 6.427 3 C 0.065 3.935 4 C -0.102 4.102 5 C -0.116 4.116 6 C 0.515 3.485 7 O -0.580 6.580 8 N -0.600 5.600 9 C 0.089 3.911 10 C -0.111 4.111 11 C -0.117 4.117 12 C 0.133 3.867 13 C -0.117 4.117 14 C 0.095 3.905 15 N -0.616 5.616 16 C 0.144 3.856 17 C 0.030 3.970 18 C -0.549 4.549 19 H 0.061 0.939 20 C 0.002 3.998 21 N -0.929 5.929 22 Si 0.972 3.028 23 H -0.276 1.276 24 H -0.275 1.275 25 H -0.260 1.260 26 C 0.500 3.500 27 O -0.587 6.587 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.139 0.861 36 H 0.112 0.888 37 H 0.065 0.935 38 H 0.125 0.875 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.053 0.947 43 H 0.137 0.863 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.040 0.960 49 H -0.026 1.026 50 H 0.006 0.994 51 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.715 7.632 17.813 31.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.347 6.347 3 C -0.011 4.011 4 C -0.141 4.141 5 C -0.156 4.156 6 C 0.306 3.694 7 O -0.460 6.460 8 N -0.333 5.333 9 C -0.032 4.032 10 C -0.149 4.149 11 C -0.156 4.156 12 C 0.044 3.956 13 C -0.155 4.155 14 C -0.027 4.027 15 N -0.348 5.348 16 C 0.022 3.978 17 C -0.008 4.008 18 C -0.587 4.587 19 H 0.079 0.921 20 C -0.196 4.196 21 N -0.568 5.568 22 Si 0.796 3.204 23 H -0.202 1.202 24 H -0.200 1.200 25 H -0.184 1.184 26 C 0.287 3.713 27 O -0.468 6.468 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.157 0.843 36 H 0.130 0.870 37 H 0.083 0.917 38 H 0.143 0.857 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.072 0.928 43 H 0.155 0.845 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.103 0.897 48 H 0.059 0.941 49 H -0.007 1.007 50 H 0.025 0.975 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.437 6.937 17.155 30.653 hybrid contribution 0.923 -0.640 -1.528 1.897 sum -23.514 6.297 15.626 28.927 Atomic orbital electron populations 1.22922 0.79251 1.03676 1.01154 1.87859 1.21765 1.29404 1.95689 1.22570 0.92111 0.84396 1.02014 1.21160 0.94111 0.96259 1.02539 1.21523 0.87732 0.99037 1.07276 1.21227 0.91045 0.82347 0.74744 1.90735 1.76018 1.27966 1.51234 1.48426 1.04112 1.08129 1.72655 1.22837 0.99786 0.78280 1.02308 1.22872 0.90069 0.99580 1.02348 1.22620 1.01554 0.88727 1.02668 1.21190 0.82964 0.98606 0.92875 1.22949 0.95369 1.00573 0.96633 1.22385 0.99072 1.03093 0.78123 1.48596 1.32150 1.43561 1.10444 1.21342 0.92072 0.92968 0.91449 1.19164 0.92224 0.94496 0.94922 1.21504 1.10925 0.99079 1.27216 0.92052 1.26015 0.98558 0.96607 0.98465 1.70102 1.26232 1.16086 1.44398 0.85349 0.77538 0.79080 0.78481 1.20156 1.19954 1.18443 1.21651 0.79979 0.79314 0.90329 1.90602 1.65025 1.66526 1.24600 0.92442 0.93115 0.89149 0.90459 0.91925 0.93960 0.91850 0.84272 0.86960 0.91654 0.85694 0.87108 0.87185 0.86910 0.92805 0.84507 0.90161 0.89451 0.89606 0.89682 0.94129 1.00716 0.97521 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.43 -8.70 10.70 -148.98 -1.59 -10.29 16 3 C 0.07 0.98 5.94 71.98 0.43 1.41 16 4 C -0.10 -2.12 4.87 30.59 0.15 -1.97 16 5 C -0.12 -1.87 4.72 29.85 0.14 -1.73 16 6 C 0.52 14.04 7.28 87.66 0.64 14.68 16 7 O -0.58 -21.97 14.42 -3.05 -0.04 -22.01 16 8 N -0.60 -14.44 2.90 -770.21 -2.23 -16.67 16 9 C 0.09 1.18 6.71 86.83 0.58 1.76 16 10 C -0.11 -1.16 7.09 32.07 0.23 -0.93 16 11 C -0.12 -2.49 5.97 31.60 0.19 -2.30 16 12 C 0.13 3.79 0.72 3.36 0.00 3.79 16 13 C -0.12 -2.75 6.05 31.46 0.19 -2.56 16 14 C 0.10 2.87 7.36 86.87 0.64 3.51 16 15 N -0.62 -26.19 2.94 -818.13 -2.41 -28.59 16 16 C 0.14 7.09 5.88 86.38 0.51 7.59 16 17 C 0.03 1.73 5.30 29.85 0.16 1.89 16 18 C -0.55 -33.34 9.11 25.60 0.23 -33.11 16 19 H 0.06 3.58 7.74 -2.91 -0.02 3.56 16 20 C 0.00 0.12 5.46 84.66 0.46 0.58 16 21 N -0.93 -58.40 13.29 21.45 0.28 -58.12 16 22 Si 0.97 46.15 29.54 68.60 2.03 48.17 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 26 C 0.50 21.66 6.08 87.62 0.53 22.19 16 27 O -0.59 -31.35 17.62 -3.01 -0.05 -31.41 16 28 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.04 1.17 8.10 -2.39 -0.02 1.16 16 34 H 0.06 1.49 8.10 -2.38 -0.02 1.47 16 35 H 0.14 0.99 7.86 -2.39 -0.02 0.97 16 36 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.13 0.58 7.51 -2.39 -0.02 0.56 16 39 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 41 H 0.11 1.91 7.62 -2.38 -0.02 1.89 16 42 H 0.05 1.50 7.90 -2.39 -0.02 1.48 16 43 H 0.14 1.90 7.67 -2.39 -0.02 1.88 16 44 H 0.08 2.11 6.53 -2.39 -0.02 2.10 16 45 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 47 H 0.08 3.80 8.14 -2.39 -0.02 3.78 16 48 H 0.04 2.19 7.94 -2.39 -0.02 2.17 16 49 H -0.03 -1.69 8.14 -2.39 -0.02 -1.71 16 50 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 51 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -94.45 411.56 3.20 -91.25 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.89 Total: 11.30 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 6.33 Total: 16.37 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -4.35 Total: -103.39 kcal Atomic # 8 Polarization: -62.02 SS G_CDS: -1.69 Total: -63.71 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -94.45 3.20 -91.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270801970.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.155 kcal (2) G-P(sol) polarization free energy of solvation -94.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds