Wall clock time and date at job start Tue Mar 31 2020 21:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.53002 * 109.47079 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46969 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46861 * 179.97438 * 5 4 3 7 7 O 1.21282 * 120.00040 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00033 * 180.02562 * 6 5 4 9 9 C 1.47646 * 125.81308 * 0.02562 * 8 6 5 10 10 C 1.54973 * 104.86192 * 203.96901 * 9 8 6 11 11 C 1.55336 * 101.66540 * 323.40667 * 10 9 8 12 12 C 1.46240 * 125.81358 * 179.71550 * 8 6 5 13 13 C 1.53907 * 110.87209 * 57.76422 * 12 8 6 14 14 C 1.54643 * 101.58669 * 263.48022 * 13 12 8 15 15 N 1.46845 * 105.50198 * 335.21795 * 14 13 12 16 16 C 1.46498 * 124.36694 * 196.85195 * 15 14 13 17 17 C 1.53000 * 109.47358 * 270.04995 * 16 15 14 18 18 C 1.50707 * 109.46978 * 179.97438 * 17 16 15 19 19 H 1.07991 * 120.00227 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99578 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99643 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00110 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47288 * 89.99838 * 22 20 18 24 24 H 1.48499 * 109.46886 * 209.99507 * 22 20 18 25 25 H 1.48501 * 109.47363 * 329.99323 * 22 20 18 26 26 C 1.34659 * 111.26608 * 16.87711 * 15 14 13 27 27 O 1.21277 * 125.07318 * 179.18749 * 26 15 14 28 28 H 1.08997 * 109.47442 * 300.00036 * 1 2 3 29 29 H 1.08997 * 109.47171 * 60.00232 * 1 2 3 30 30 H 1.08999 * 109.46926 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47054 * 299.99711 * 3 2 1 32 32 H 1.09000 * 109.47187 * 59.99767 * 3 2 1 33 33 H 1.09004 * 109.46930 * 299.99773 * 4 3 2 34 34 H 1.09004 * 109.47059 * 59.99375 * 4 3 2 35 35 H 1.08996 * 109.47452 * 300.00062 * 5 4 3 36 36 H 1.09000 * 109.47054 * 59.99902 * 5 4 3 37 37 H 1.09004 * 110.36453 * 322.81780 * 9 8 6 38 38 H 1.09011 * 110.36535 * 85.12520 * 9 8 6 39 39 H 1.08999 * 110.98943 * 81.50203 * 10 9 8 40 40 H 1.09000 * 110.99382 * 205.31201 * 10 9 8 41 41 H 1.09001 * 110.75580 * 153.20591 * 11 10 9 42 42 H 1.08993 * 110.75708 * 276.58811 * 11 10 9 43 43 H 1.08999 * 111.00409 * 21.55217 * 13 12 8 44 44 H 1.09004 * 111.00242 * 145.40787 * 13 12 8 45 45 H 1.08999 * 110.24086 * 216.21442 * 14 13 12 46 46 H 1.08998 * 110.23667 * 94.22404 * 14 13 12 47 47 H 1.09000 * 109.47245 * 30.05286 * 16 15 14 48 48 H 1.09003 * 109.47287 * 150.05016 * 16 15 14 49 49 H 1.08996 * 109.47250 * 299.99568 * 17 16 15 50 50 H 1.08994 * 109.47088 * 60.00342 * 17 16 15 51 51 H 0.97001 * 119.99716 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1576 2.5825 -0.0013 6 6 5.6599 2.4635 -0.0013 7 8 6.1815 1.3686 -0.0004 8 7 6.4239 3.5739 -0.0013 9 6 5.9272 4.9643 -0.0008 10 6 7.0822 5.7992 -0.6095 11 6 8.3302 5.0768 -0.0320 12 6 7.8859 3.6067 0.0046 13 6 8.4563 2.8487 -1.2074 14 6 8.7564 1.4616 -0.5930 15 7 8.9438 1.7009 0.8436 16 6 9.5842 0.7567 1.7626 17 6 8.5268 -0.1804 2.3498 18 6 9.1859 -1.1520 3.2947 19 1 10.2520 -1.1056 3.4602 20 6 8.4273 -2.0996 3.9487 21 7 9.0023 -2.9472 4.7737 22 14 6.5831 -2.1795 3.6630 23 1 6.2970 -3.0938 2.5283 24 1 5.9140 -2.6866 4.8880 25 1 6.0720 -0.8218 3.3458 26 6 8.4505 2.8999 1.2075 27 8 8.4601 3.3441 2.3360 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 -0.8900 32 1 1.6885 1.8465 0.8900 33 1 3.8574 0.6437 0.8892 34 1 3.8567 0.6439 -0.8908 35 1 3.8356 3.1232 -0.8912 36 1 3.8364 3.1236 0.8887 37 1 5.0326 5.0478 -0.6180 38 1 5.7181 5.2921 1.0177 39 1 7.0699 5.7472 -1.6982 40 1 7.0377 6.8338 -0.2691 41 1 9.1903 5.2069 -0.6889 42 1 8.5528 5.4342 0.9733 43 1 7.7159 2.7714 -2.0036 44 1 9.3693 3.3214 -1.5694 45 1 9.6652 1.0454 -1.0276 46 1 7.9160 0.7870 -0.7565 47 1 10.3283 0.1716 1.2222 48 1 10.0700 1.3068 2.5686 49 1 7.7828 0.4047 2.8904 50 1 8.0412 -0.7305 1.5440 51 1 8.4687 -3.6142 5.2335 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270801972.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:08 Heat of formation + Delta-G solvation = -108.483893 kcal Electronic energy + Delta-G solvation = -31485.284696 eV Core-core repulsion = 27384.929701 eV Total energy + Delta-G solvation = -4100.354995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.38741 -38.98811 -38.07345 -37.28759 -35.93516 -33.92782 -33.42094 -32.05773 -31.69724 -29.46458 -28.15594 -27.84036 -25.99907 -25.23358 -24.07063 -22.83733 -22.10026 -21.43106 -20.55846 -19.65091 -18.45714 -17.27102 -16.87521 -16.65602 -16.55842 -16.22767 -15.92810 -15.50560 -15.19025 -15.01817 -14.70241 -14.29433 -14.08521 -13.90618 -13.62024 -13.49508 -13.21900 -12.99910 -12.78337 -12.61041 -12.46393 -12.30153 -12.25989 -12.15415 -11.94210 -11.64730 -11.52729 -11.44364 -11.24682 -11.13755 -11.06085 -10.88269 -10.78426 -10.32339 -9.90238 -9.88918 -9.81848 -9.69670 -9.58467 -9.13930 -8.56019 -8.43263 -7.94814 -5.95841 -3.93705 2.39739 2.62105 3.25215 3.43616 3.49335 3.54485 3.61616 3.63085 4.10069 4.25348 4.41885 4.53324 4.57852 4.69055 4.75995 4.76889 4.85880 4.95811 5.01718 5.04138 5.11243 5.14421 5.17576 5.21012 5.27888 5.35621 5.37430 5.39853 5.44624 5.49998 5.54157 5.60395 5.74490 5.82417 5.90590 5.95917 6.06180 6.15061 6.24364 6.31021 6.45299 6.75266 6.95186 6.98333 7.35552 7.39463 7.53891 7.78176 7.88512 8.17352 8.58071 8.66754 9.07272 9.67722 11.17154 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.006616 B = 0.005590 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4231.016791 B = 5007.401014 C = 8537.992343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.064 3.936 4 C -0.108 4.108 5 C -0.127 4.127 6 C 0.522 3.478 7 O -0.504 6.504 8 N -0.601 5.601 9 C 0.100 3.900 10 C -0.128 4.128 11 C -0.115 4.115 12 C 0.132 3.868 13 C -0.133 4.133 14 C 0.098 3.902 15 N -0.594 5.594 16 C 0.138 3.862 17 C -0.019 4.019 18 C -0.519 4.519 19 H 0.073 0.927 20 C 0.071 3.929 21 N -0.904 5.904 22 Si 0.879 3.121 23 H -0.276 1.276 24 H -0.289 1.289 25 H -0.264 1.264 26 C 0.512 3.488 27 O -0.532 6.532 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.097 0.903 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.017 0.983 50 H 0.017 0.983 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.450 19.477 -18.127 29.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.013 4.013 4 C -0.146 4.146 5 C -0.167 4.167 6 C 0.310 3.690 7 O -0.378 6.378 8 N -0.338 5.338 9 C -0.023 4.023 10 C -0.166 4.166 11 C -0.153 4.153 12 C 0.043 3.957 13 C -0.172 4.172 14 C -0.025 4.025 15 N -0.325 5.325 16 C 0.018 3.982 17 C -0.057 4.057 18 C -0.558 4.558 19 H 0.091 0.909 20 C -0.131 4.131 21 N -0.543 5.543 22 Si 0.706 3.294 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.189 1.189 26 C 0.296 3.704 27 O -0.408 6.408 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.087 0.913 46 H 0.114 0.886 47 H 0.089 0.911 48 H 0.092 0.908 49 H 0.036 0.964 50 H 0.035 0.965 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.095 18.612 -17.350 28.173 hybrid contribution -1.267 0.031 0.002 1.268 sum -13.362 18.643 -17.348 28.759 Atomic orbital electron populations 1.22740 0.81097 1.02858 0.99783 1.87934 1.19610 1.27870 1.95358 1.22519 0.94074 0.84788 0.99929 1.21264 0.92154 0.95705 1.05518 1.21477 0.91466 0.99494 1.04268 1.20383 0.89146 0.83142 0.76300 1.90774 1.74017 1.25530 1.47485 1.48292 1.04572 1.06457 1.74457 1.22442 0.97624 0.80791 1.01446 1.22795 0.93813 0.99214 1.00820 1.22569 0.98317 0.90970 1.03432 1.21099 0.81962 0.97186 0.95496 1.22920 1.01547 0.96043 0.96676 1.22288 1.02515 0.97228 0.80495 1.48447 1.57298 1.17305 1.09489 1.21574 0.95759 0.89847 0.91020 1.19815 0.95116 0.94616 0.96138 1.21013 0.96291 1.14029 1.24438 0.90924 1.24941 0.98459 0.95121 0.94537 1.69917 1.36000 1.19404 1.28997 0.86774 0.86043 0.79080 0.77455 1.20202 1.21520 1.18899 1.20448 0.78403 0.82355 0.89166 1.90676 1.57920 1.70157 1.22065 0.94094 0.94189 0.89577 0.93389 0.93283 0.89889 0.90058 0.88860 0.88803 0.90204 0.90896 0.90327 0.89461 0.89342 0.89235 0.89485 0.89554 0.91298 0.88554 0.91140 0.90832 0.96443 0.96487 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.92 10.70 -35.23 -0.38 -5.29 16 3 C 0.06 0.65 5.94 37.16 0.22 0.87 16 4 C -0.11 -1.34 4.87 -26.73 -0.13 -1.47 16 5 C -0.13 -1.28 4.72 -27.89 -0.13 -1.41 16 6 C 0.52 7.41 7.45 -10.99 -0.08 7.33 16 7 O -0.50 -9.35 12.00 5.56 0.07 -9.28 16 8 N -0.60 -7.44 2.85 -157.38 -0.45 -7.89 16 9 C 0.10 0.80 6.71 -2.37 -0.02 0.78 16 10 C -0.13 -0.83 7.10 -24.45 -0.17 -1.00 16 11 C -0.11 -1.12 6.06 -25.17 -0.15 -1.27 16 12 C 0.13 1.77 0.85 -132.41 -0.11 1.65 16 13 C -0.13 -1.54 6.00 -25.39 -0.15 -1.69 16 14 C 0.10 1.52 6.39 -2.99 -0.02 1.50 16 15 N -0.59 -11.62 2.74 -172.51 -0.47 -12.09 16 16 C 0.14 3.12 5.88 -4.04 -0.02 3.10 16 17 C -0.02 -0.50 4.37 -27.88 -0.12 -0.62 16 18 C -0.52 -15.91 9.66 -34.44 -0.33 -16.25 16 19 H 0.07 2.32 7.99 -52.49 -0.42 1.90 16 20 C 0.07 2.21 5.47 -17.82 -0.10 2.11 16 21 N -0.90 -29.33 13.96 55.43 0.77 -28.56 16 22 Si 0.88 24.15 27.47 -169.99 -4.67 19.48 16 23 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 25 H -0.26 -7.36 6.54 56.52 0.37 -6.99 16 26 C 0.51 9.88 6.48 -11.13 -0.07 9.81 16 27 O -0.53 -12.28 17.07 5.56 0.09 -12.19 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 34 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 35 H 0.09 0.63 7.86 -51.93 -0.41 0.22 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.41 7.51 -51.93 -0.39 0.02 16 38 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.69 7.39 -51.93 -0.38 0.30 16 42 H 0.09 1.04 7.50 -51.93 -0.39 0.65 16 43 H 0.09 0.90 8.07 -51.93 -0.42 0.49 16 44 H 0.09 0.79 7.45 -51.93 -0.39 0.40 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.10 1.70 5.78 -51.93 -0.30 1.40 16 47 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 48 H 0.07 1.74 7.94 -51.93 -0.41 1.32 16 49 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16 50 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 51 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 LS Contribution 402.83 15.07 6.07 6.07 Total: -1.00 -39.93 402.83 -8.18 -48.11 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -8.93 Total: -3.18 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -0.28 Total: 4.82 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.15 Total: -48.54 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.22 Total: -26.76 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -4.67 Total: 19.48 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -39.93 -8.18 -48.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270801972.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.372 kcal (2) G-P(sol) polarization free energy of solvation -39.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds