Wall clock time and date at job start Tue Mar 31 2020 21:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.53002 * 109.47079 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46969 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46861 * 179.97438 * 5 4 3 7 7 O 1.21282 * 120.00040 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00033 * 180.02562 * 6 5 4 9 9 C 1.47646 * 125.81308 * 0.02562 * 8 6 5 10 10 C 1.54973 * 104.86192 * 203.96901 * 9 8 6 11 11 C 1.55336 * 101.66540 * 323.40667 * 10 9 8 12 12 C 1.46240 * 125.81358 * 179.71550 * 8 6 5 13 13 C 1.53907 * 110.87209 * 57.76422 * 12 8 6 14 14 C 1.54643 * 101.58669 * 263.48022 * 13 12 8 15 15 N 1.46845 * 105.50198 * 335.21795 * 14 13 12 16 16 C 1.46498 * 124.36694 * 196.85195 * 15 14 13 17 17 C 1.53000 * 109.47358 * 270.04995 * 16 15 14 18 18 C 1.50707 * 109.46978 * 179.97438 * 17 16 15 19 19 H 1.07991 * 120.00227 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99578 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99643 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00110 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47288 * 89.99838 * 22 20 18 24 24 H 1.48499 * 109.46886 * 209.99507 * 22 20 18 25 25 H 1.48501 * 109.47363 * 329.99323 * 22 20 18 26 26 C 1.34659 * 111.26608 * 16.87711 * 15 14 13 27 27 O 1.21277 * 125.07318 * 179.18749 * 26 15 14 28 28 H 1.08997 * 109.47442 * 300.00036 * 1 2 3 29 29 H 1.08997 * 109.47171 * 60.00232 * 1 2 3 30 30 H 1.08999 * 109.46926 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47054 * 299.99711 * 3 2 1 32 32 H 1.09000 * 109.47187 * 59.99767 * 3 2 1 33 33 H 1.09004 * 109.46930 * 299.99773 * 4 3 2 34 34 H 1.09004 * 109.47059 * 59.99375 * 4 3 2 35 35 H 1.08996 * 109.47452 * 300.00062 * 5 4 3 36 36 H 1.09000 * 109.47054 * 59.99902 * 5 4 3 37 37 H 1.09004 * 110.36453 * 322.81780 * 9 8 6 38 38 H 1.09011 * 110.36535 * 85.12520 * 9 8 6 39 39 H 1.08999 * 110.98943 * 81.50203 * 10 9 8 40 40 H 1.09000 * 110.99382 * 205.31201 * 10 9 8 41 41 H 1.09001 * 110.75580 * 153.20591 * 11 10 9 42 42 H 1.08993 * 110.75708 * 276.58811 * 11 10 9 43 43 H 1.08999 * 111.00409 * 21.55217 * 13 12 8 44 44 H 1.09004 * 111.00242 * 145.40787 * 13 12 8 45 45 H 1.08999 * 110.24086 * 216.21442 * 14 13 12 46 46 H 1.08998 * 110.23667 * 94.22404 * 14 13 12 47 47 H 1.09000 * 109.47245 * 30.05286 * 16 15 14 48 48 H 1.09003 * 109.47287 * 150.05016 * 16 15 14 49 49 H 1.08996 * 109.47250 * 299.99568 * 17 16 15 50 50 H 1.08994 * 109.47088 * 60.00342 * 17 16 15 51 51 H 0.97001 * 119.99716 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1576 2.5825 -0.0013 6 6 5.6599 2.4635 -0.0013 7 8 6.1815 1.3686 -0.0004 8 7 6.4239 3.5739 -0.0013 9 6 5.9272 4.9643 -0.0008 10 6 7.0822 5.7992 -0.6095 11 6 8.3302 5.0768 -0.0320 12 6 7.8859 3.6067 0.0046 13 6 8.4563 2.8487 -1.2074 14 6 8.7564 1.4616 -0.5930 15 7 8.9438 1.7009 0.8436 16 6 9.5842 0.7567 1.7626 17 6 8.5268 -0.1804 2.3498 18 6 9.1859 -1.1520 3.2947 19 1 10.2520 -1.1056 3.4602 20 6 8.4273 -2.0996 3.9487 21 7 9.0023 -2.9472 4.7737 22 14 6.5831 -2.1795 3.6630 23 1 6.2970 -3.0938 2.5283 24 1 5.9140 -2.6866 4.8880 25 1 6.0720 -0.8218 3.3458 26 6 8.4505 2.8999 1.2075 27 8 8.4601 3.3441 2.3360 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 -0.8900 32 1 1.6885 1.8465 0.8900 33 1 3.8574 0.6437 0.8892 34 1 3.8567 0.6439 -0.8908 35 1 3.8356 3.1232 -0.8912 36 1 3.8364 3.1236 0.8887 37 1 5.0326 5.0478 -0.6180 38 1 5.7181 5.2921 1.0177 39 1 7.0699 5.7472 -1.6982 40 1 7.0377 6.8338 -0.2691 41 1 9.1903 5.2069 -0.6889 42 1 8.5528 5.4342 0.9733 43 1 7.7159 2.7714 -2.0036 44 1 9.3693 3.3214 -1.5694 45 1 9.6652 1.0454 -1.0276 46 1 7.9160 0.7870 -0.7565 47 1 10.3283 0.1716 1.2222 48 1 10.0700 1.3068 2.5686 49 1 7.7828 0.4047 2.8904 50 1 8.0412 -0.7305 1.5440 51 1 8.4687 -3.6142 5.2335 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270801972.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:07 Heat of formation + Delta-G solvation = -137.888685 kcal Electronic energy + Delta-G solvation = -31486.559783 eV Core-core repulsion = 27384.929701 eV Total energy + Delta-G solvation = -4101.630082 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.50509 -40.20294 -38.93649 -38.31036 -37.49261 -35.65669 -34.72164 -33.73569 -32.71897 -31.11956 -29.11332 -28.74372 -27.13705 -26.73264 -25.12951 -23.79313 -23.29774 -22.85307 -21.65612 -21.01926 -19.70424 -19.15814 -18.27446 -17.54727 -17.43066 -17.20976 -17.15293 -16.81262 -16.56188 -16.12065 -15.89081 -15.75996 -15.44782 -15.10858 -14.88045 -14.78552 -14.51096 -14.37333 -14.27234 -13.85808 -13.77088 -13.48067 -13.19251 -13.07219 -13.04521 -12.97952 -12.77792 -12.58588 -12.38798 -12.25799 -12.06333 -12.03904 -11.98503 -11.94456 -11.81686 -11.62404 -11.52647 -11.01433 -10.89937 -10.83083 -10.64339 -9.68937 -9.54468 -8.43910 -6.46972 1.19396 1.19789 1.22891 1.36268 1.59556 2.06741 2.15039 2.22165 2.84071 2.90643 3.21657 3.32309 3.60720 3.64515 3.82307 3.91305 4.04563 4.08578 4.15628 4.21276 4.24240 4.30401 4.40707 4.42446 4.44746 4.48589 4.54600 4.56382 4.60160 4.64665 4.70858 4.78130 4.79473 4.82809 4.91592 4.95406 5.04780 5.06697 5.13007 5.17256 5.19522 5.20246 5.31027 5.38126 5.41719 5.67796 6.11466 6.23823 6.24820 6.45694 6.57836 7.12481 7.16497 7.19182 8.72354 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.006616 B = 0.005590 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4231.016791 B = 5007.401014 C = 8537.992343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.430 6.430 3 C 0.066 3.934 4 C -0.106 4.106 5 C -0.115 4.115 6 C 0.506 3.494 7 O -0.561 6.561 8 N -0.602 5.602 9 C 0.089 3.911 10 C -0.112 4.112 11 C -0.114 4.114 12 C 0.132 3.868 13 C -0.114 4.114 14 C 0.089 3.911 15 N -0.603 5.603 16 C 0.147 3.853 17 C 0.000 4.000 18 C -0.533 4.533 19 H 0.048 0.952 20 C 0.022 3.978 21 N -0.937 5.937 22 Si 0.941 3.059 23 H -0.263 1.263 24 H -0.270 1.270 25 H -0.280 1.280 26 C 0.494 3.506 27 O -0.585 6.585 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.031 0.969 34 H 0.065 0.935 35 H 0.142 0.858 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.121 0.879 45 H 0.089 0.911 46 H 0.073 0.927 47 H 0.089 0.911 48 H 0.054 0.946 49 H -0.015 1.015 50 H 0.011 0.989 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.648 22.474 -21.523 34.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.350 6.350 3 C -0.010 4.010 4 C -0.144 4.144 5 C -0.154 4.154 6 C 0.297 3.703 7 O -0.439 6.439 8 N -0.337 5.337 9 C -0.032 4.032 10 C -0.150 4.150 11 C -0.152 4.152 12 C 0.043 3.957 13 C -0.152 4.152 14 C -0.033 4.033 15 N -0.333 5.333 16 C 0.025 3.975 17 C -0.038 4.038 18 C -0.571 4.571 19 H 0.066 0.934 20 C -0.176 4.176 21 N -0.577 5.577 22 Si 0.766 3.234 23 H -0.188 1.188 24 H -0.195 1.195 25 H -0.205 1.205 26 C 0.281 3.719 27 O -0.465 6.465 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.160 0.840 36 H 0.127 0.873 37 H 0.138 0.862 38 H 0.082 0.918 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.081 0.919 43 H 0.125 0.875 44 H 0.139 0.861 45 H 0.107 0.893 46 H 0.091 0.909 47 H 0.107 0.893 48 H 0.073 0.927 49 H 0.003 0.997 50 H 0.030 0.970 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.307 21.648 -20.782 33.245 hybrid contribution -0.529 -0.940 1.140 1.570 sum -14.836 20.708 -19.641 32.167 Atomic orbital electron populations 1.22924 0.79198 1.03636 1.01228 1.87880 1.21870 1.29538 1.95689 1.22579 0.92050 0.84357 1.02041 1.21192 0.94318 0.96620 1.02267 1.21490 0.88260 0.98499 1.07160 1.21226 0.90931 0.82822 0.75325 1.90761 1.75240 1.27777 1.50073 1.48520 1.04096 1.07969 1.73120 1.22826 0.99907 0.78294 1.02152 1.22846 0.90488 0.99500 1.02120 1.22635 1.01102 0.88458 1.03035 1.21206 0.82850 0.98947 0.92741 1.22963 1.03513 0.92837 0.95913 1.22517 1.02610 0.99869 0.78294 1.48560 1.56954 1.16946 1.10872 1.21163 0.94780 0.89847 0.91726 1.19557 0.95200 0.94189 0.94874 1.21287 0.95483 1.14961 1.25363 0.93370 1.25709 1.02818 0.94795 0.94284 1.70006 1.37855 1.20092 1.29759 0.85808 0.80773 0.78420 0.78400 1.18790 1.19536 1.20502 1.21718 0.77363 0.82398 0.90403 1.90622 1.59644 1.71409 1.24848 0.93181 0.92107 0.89320 0.90015 0.92129 0.94952 0.91599 0.84014 0.87341 0.86170 0.91844 0.87623 0.87210 0.86676 0.91866 0.87477 0.86098 0.89261 0.90938 0.89294 0.92724 0.99703 0.97031 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.43 -10.56 10.70 -148.98 -1.59 -12.16 16 3 C 0.07 1.22 5.94 71.98 0.43 1.65 16 4 C -0.11 -2.60 4.87 30.59 0.15 -2.45 16 5 C -0.11 -2.05 4.72 29.85 0.14 -1.91 16 6 C 0.51 13.98 7.45 87.66 0.65 14.63 16 7 O -0.56 -21.49 12.00 -3.04 -0.04 -21.52 16 8 N -0.60 -13.63 2.85 -770.21 -2.20 -15.82 16 9 C 0.09 1.06 6.71 86.83 0.58 1.65 16 10 C -0.11 -0.88 7.10 32.07 0.23 -0.65 16 11 C -0.11 -1.89 6.06 31.60 0.19 -1.70 16 12 C 0.13 3.32 0.85 3.36 0.00 3.32 16 13 C -0.11 -2.31 6.00 31.46 0.19 -2.12 16 14 C 0.09 2.71 6.39 86.87 0.55 3.27 16 15 N -0.60 -24.34 2.74 -818.15 -2.24 -26.58 16 16 C 0.15 7.01 5.88 86.38 0.51 7.52 16 17 C 0.00 0.01 4.37 29.85 0.13 0.14 16 18 C -0.53 -34.24 9.66 25.60 0.25 -33.99 16 19 H 0.05 3.25 7.99 -2.92 -0.02 3.23 16 20 C 0.02 1.45 5.47 84.66 0.46 1.91 16 21 N -0.94 -62.25 13.96 21.45 0.30 -61.95 16 22 Si 0.94 51.77 27.47 68.60 1.88 53.65 16 23 H -0.26 -13.84 7.11 99.48 0.71 -13.13 16 24 H -0.27 -13.99 7.11 99.48 0.71 -13.28 16 25 H -0.28 -15.98 6.54 99.48 0.65 -15.33 16 26 C 0.49 19.61 6.48 87.62 0.57 20.18 16 27 O -0.58 -28.57 17.07 -3.02 -0.05 -28.62 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.03 1.09 8.10 -2.38 -0.02 1.07 16 34 H 0.07 1.77 8.10 -2.39 -0.02 1.75 16 35 H 0.14 1.16 7.86 -2.39 -0.02 1.14 16 36 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.12 0.51 7.51 -2.39 -0.02 0.49 16 38 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.11 1.28 7.39 -2.39 -0.02 1.26 16 42 H 0.06 1.41 7.50 -2.39 -0.02 1.39 16 43 H 0.11 1.80 8.07 -2.39 -0.02 1.78 16 44 H 0.12 1.63 7.45 -2.39 -0.02 1.61 16 45 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.07 2.62 5.78 -2.39 -0.01 2.61 16 47 H 0.09 3.84 8.14 -2.39 -0.02 3.82 16 48 H 0.05 2.77 7.94 -2.39 -0.02 2.75 16 49 H -0.02 -0.98 7.20 -2.39 -0.02 -1.00 16 50 H 0.01 0.66 7.57 -2.39 -0.02 0.64 16 51 H 0.27 16.64 8.31 -92.71 -0.77 15.87 16 Total: -1.00 -96.40 402.83 3.19 -93.22 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 0.84 Total: 6.69 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 6.28 Total: 13.09 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -4.14 Total: -104.35 kcal Atomic # 8 Polarization: -60.61 SS G_CDS: -1.68 Total: -62.29 kcal Atomic # 14 Polarization: 51.77 SS G_CDS: 1.88 Total: 53.65 kcal Total: -96.40 3.19 -93.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270801972.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.672 kcal (2) G-P(sol) polarization free energy of solvation -96.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds