Wall clock time and date at job start Tue Mar 31 2020 21:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.46503 * 120.00476 * 2 1 4 4 C 1.34780 * 120.00136 * 179.97438 * 2 1 3 5 5 O 1.21282 * 119.99894 * 3.57342 * 4 2 1 6 6 C 1.50699 * 120.00189 * 183.56916 * 4 2 1 7 7 H 1.08994 * 109.47150 * 320.70946 * 6 4 2 8 8 C 1.53178 * 109.46827 * 80.70352 * 6 4 2 9 9 N 1.46936 * 108.64411 * 174.58663 * 8 6 4 10 10 C 1.34778 * 120.66298 * 126.08212 * 9 8 6 11 11 O 1.21270 * 120.00552 * 179.97438 * 10 9 8 12 12 C 1.50701 * 119.99387 * 359.97438 * 10 9 8 13 13 C 1.53009 * 109.47167 * 180.02562 * 12 10 9 14 14 C 1.50690 * 109.47488 * 179.97438 * 13 12 10 15 15 H 1.08006 * 120.00014 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00290 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99834 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00287 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46717 * 59.99934 * 18 16 14 20 20 H 1.48500 * 109.47334 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47042 * 300.00160 * 18 16 14 22 22 C 1.46873 * 118.68199 * 306.06163 * 9 8 6 23 23 C 1.53266 * 108.92450 * 53.89344 * 22 9 8 24 24 H 1.08996 * 109.71974 * 66.12289 * 23 22 9 25 25 C 1.53361 * 109.24615 * 186.89448 * 23 22 9 26 26 C 1.53190 * 108.44313 * 60.89063 * 25 23 22 27 27 C 1.53053 * 109.29899 * 57.35043 * 26 25 23 28 28 O 1.42949 * 109.52582 * 302.75385 * 27 26 25 29 29 C 1.42814 * 113.95281 * 60.81618 * 28 27 26 30 30 H 1.09003 * 109.32966 * 57.60787 * 29 28 27 31 31 H 1.09000 * 109.47429 * 270.00738 * 1 2 3 32 32 H 1.09002 * 109.46953 * 30.00039 * 1 2 3 33 33 H 1.08998 * 109.47381 * 150.00367 * 1 2 3 34 34 H 1.08990 * 109.47354 * 174.50608 * 3 2 1 35 35 H 1.09004 * 109.46912 * 294.50351 * 3 2 1 36 36 H 1.09002 * 109.47238 * 54.49896 * 3 2 1 37 37 H 1.09003 * 109.61036 * 54.83622 * 8 6 4 38 38 H 1.08997 * 109.60714 * 294.33854 * 8 6 4 39 39 H 1.08999 * 109.47430 * 299.99907 * 12 10 9 40 40 H 1.09003 * 109.47588 * 60.00147 * 12 10 9 41 41 H 1.08999 * 109.46855 * 300.00242 * 13 12 10 42 42 H 1.09003 * 109.46761 * 59.99622 * 13 12 10 43 43 H 0.97003 * 120.00261 * 179.97438 * 17 16 14 44 44 H 1.09005 * 109.55813 * 173.72614 * 22 9 8 45 45 H 1.08999 * 109.56182 * 294.05829 * 22 9 8 46 46 H 1.09003 * 109.56351 * 301.32596 * 25 23 22 47 47 H 1.09008 * 110.09435 * 180.75943 * 25 23 22 48 48 H 1.09009 * 109.49647 * 297.40585 * 26 25 23 49 49 H 1.09000 * 109.50255 * 177.30682 * 26 25 23 50 50 H 1.08994 * 109.46571 * 182.73351 * 27 26 25 51 51 H 1.09004 * 109.45877 * 62.76754 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5342 -2.2166 -0.0645 6 6 3.6436 -1.1685 0.0818 7 1 4.0408 -0.3539 -0.5237 8 6 4.0764 -0.9794 1.5389 9 7 5.5376 -1.1133 1.6162 10 6 6.2877 -0.1453 2.1788 11 8 7.4928 -0.2684 2.2367 12 6 5.6289 1.0902 2.7362 13 6 6.6971 2.0223 3.3117 14 6 6.0384 3.2580 3.8685 15 1 4.9652 3.3679 3.8167 16 6 6.8058 4.2489 4.4431 17 7 8.1127 4.1154 4.5057 18 14 5.9894 5.7811 5.1326 19 1 5.0393 5.3948 6.2066 20 1 7.0261 6.6857 5.6913 21 1 5.2536 6.4803 4.0487 22 6 6.1645 -2.3233 1.0684 23 6 5.7109 -2.5040 -0.3845 24 1 6.1034 -1.6916 -0.9960 25 6 6.2203 -3.8520 -0.9092 26 6 5.6187 -4.9663 -0.0472 27 6 4.0918 -4.8685 -0.0876 28 8 3.6839 -3.5736 0.3597 29 6 4.1808 -2.5004 -0.4410 30 1 3.8574 -2.6402 -1.4725 31 1 -0.3634 0.0001 1.0276 32 1 -0.3633 0.8900 -0.5139 33 1 -0.3634 -0.8900 -0.5138 34 1 3.2650 1.0719 0.0984 35 1 2.0101 1.7965 -0.9352 36 1 1.8624 1.8818 0.8366 37 1 3.6059 -1.7401 2.1619 38 1 3.7812 0.0120 1.8825 39 1 5.0889 1.6042 1.9410 40 1 4.9314 0.8061 3.5242 41 1 7.2374 1.5086 4.1068 42 1 7.3943 2.3064 2.5234 43 1 8.6527 4.8127 4.9096 44 1 7.2490 -2.2195 1.1019 45 1 5.8608 -3.1897 1.6560 46 1 7.3077 -3.8833 -0.8399 47 1 5.9165 -3.9888 -1.9471 48 1 5.9632 -4.8569 0.9812 49 1 5.9317 -5.9356 -0.4351 50 1 3.6617 -5.6297 0.5632 51 1 3.7448 -5.0259 -1.1089 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271769701.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:07 Heat of formation + Delta-G solvation = -115.012508 kcal Electronic energy + Delta-G solvation = -31750.538953 eV Core-core repulsion = 27649.900856 eV Total energy + Delta-G solvation = -4100.638097 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.21630 -39.49696 -38.85428 -35.95585 -35.61862 -34.28213 -33.49003 -32.33190 -31.22687 -30.41155 -28.15780 -26.78814 -26.22758 -25.43139 -24.78281 -23.61805 -22.55668 -21.44306 -19.36943 -19.20128 -18.54827 -17.19650 -17.09862 -16.55477 -16.31426 -16.10369 -15.80297 -15.73677 -15.36604 -15.24565 -14.58192 -14.47160 -14.06738 -13.84752 -13.61957 -13.38702 -13.22379 -12.96910 -12.77396 -12.69445 -12.64385 -12.52082 -12.37457 -12.17747 -12.03909 -11.87927 -11.58580 -11.29223 -11.15400 -11.09346 -10.93580 -10.69342 -10.62935 -10.45631 -9.99152 -9.90755 -9.64036 -9.42221 -9.20587 -9.01945 -8.86495 -8.42791 -8.32657 -5.97914 -4.02651 2.42763 2.78145 3.17110 3.25272 3.32242 3.37770 3.38895 3.62530 4.19452 4.33608 4.44960 4.57113 4.67341 4.68455 4.79143 4.85020 4.89699 4.94154 5.09878 5.12167 5.15435 5.17380 5.28691 5.32247 5.37033 5.40141 5.42927 5.51035 5.55413 5.58664 5.59126 5.61745 5.70087 5.78739 5.85459 5.97875 5.99462 6.11588 6.13172 6.18325 6.23769 6.65991 6.86178 7.09591 7.19277 7.70370 7.71762 7.83590 8.03670 8.04924 8.35702 8.69889 9.05462 9.60959 11.12948 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011822 B = 0.003551 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.886726 B = 7884.171671 C = 9880.726919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.624 5.624 3 C 0.067 3.933 4 C 0.521 3.479 5 O -0.516 6.516 6 C -0.118 4.118 7 H 0.110 0.890 8 C 0.128 3.872 9 N -0.622 5.622 10 C 0.513 3.487 11 O -0.530 6.530 12 C -0.129 4.129 13 C 0.038 3.962 14 C -0.528 4.528 15 H 0.055 0.945 16 C 0.059 3.941 17 N -0.889 5.889 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.119 3.881 23 C -0.134 4.134 24 H 0.085 0.915 25 C -0.113 4.113 26 C -0.162 4.162 27 C 0.064 3.936 28 O -0.352 6.352 29 C 0.119 3.881 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.262 0.738 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.076 0.924 49 H 0.072 0.928 50 H 0.092 0.908 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.401 -14.362 -13.752 23.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.359 5.359 3 C -0.076 4.076 4 C 0.307 3.693 5 O -0.390 6.390 6 C -0.141 4.141 7 H 0.128 0.872 8 C 0.004 3.996 9 N -0.357 5.357 10 C 0.304 3.696 11 O -0.405 6.405 12 C -0.169 4.169 13 C 0.000 4.000 14 C -0.566 4.566 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.527 5.527 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.004 4.004 23 C -0.153 4.153 24 H 0.104 0.896 25 C -0.151 4.151 26 C -0.200 4.200 27 C -0.013 4.013 28 O -0.270 6.270 29 C 0.060 3.940 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.071 0.929 44 H 0.110 0.890 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.095 0.905 49 H 0.090 0.910 50 H 0.110 0.890 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.008 -14.851 -13.499 23.387 hybrid contribution -0.299 0.970 0.051 1.016 sum -12.307 -13.881 -13.448 22.913 Atomic orbital electron populations 1.21598 0.79155 1.02941 1.01969 1.47786 1.07159 1.06488 1.74472 1.22026 0.97797 0.85171 1.02606 1.20327 0.89278 0.83324 0.76334 1.90725 1.69713 1.30706 1.47855 1.21824 0.92790 0.98785 1.00661 0.87216 1.21445 0.81188 1.03716 0.93249 1.48230 1.06306 1.20165 1.61001 1.21586 0.87421 0.84185 0.76442 1.90661 1.14644 1.78908 1.56294 1.21903 1.01742 0.92869 1.00372 1.18899 0.92419 0.92163 0.96494 1.21156 0.93264 1.03138 1.39038 0.92682 1.25012 0.94788 0.98414 0.96055 1.69983 1.04297 1.34053 1.44417 0.86671 0.79036 0.82977 0.79350 1.20247 1.21299 1.20253 1.21549 0.99415 0.87418 0.91992 1.22208 0.95988 0.98832 0.98298 0.89647 1.21584 1.01050 0.93331 0.99112 1.22307 0.96969 0.99110 1.01589 1.22503 0.93396 0.85660 0.99746 1.88046 1.72779 1.13202 1.53020 1.21593 0.91691 0.86348 0.94375 0.92292 0.92635 0.91301 0.90627 0.89851 0.91894 0.90965 0.90130 0.88701 0.90446 0.90240 0.95811 0.95820 0.92875 0.88989 0.91053 0.90902 0.91489 0.90543 0.90970 0.89028 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.72 10.51 59.84 0.63 1.35 16 2 N -0.62 -6.18 3.27 -189.52 -0.62 -6.81 16 3 C 0.07 0.53 10.17 59.85 0.61 1.14 16 4 C 0.52 6.32 6.80 -10.98 -0.07 6.24 16 5 O -0.52 -7.87 14.67 -15.01 -0.22 -8.09 16 6 C -0.12 -1.32 1.64 -91.76 -0.15 -1.47 16 7 H 0.11 1.06 6.51 -51.93 -0.34 0.73 16 8 C 0.13 1.60 5.19 -3.71 -0.02 1.58 16 9 N -0.62 -9.23 2.97 -172.77 -0.51 -9.75 16 10 C 0.51 9.80 7.70 -10.98 -0.08 9.71 16 11 O -0.53 -12.31 15.39 5.57 0.09 -12.22 16 12 C -0.13 -2.53 3.99 -27.88 -0.11 -2.64 16 13 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 14 C -0.53 -14.51 9.11 -34.45 -0.31 -14.83 16 15 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 18 Si 0.89 21.18 29.54 -169.99 -5.02 16.15 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C 0.12 1.58 5.30 -3.70 -0.02 1.56 16 23 C -0.13 -1.43 2.74 -90.24 -0.25 -1.68 16 24 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 25 C -0.11 -0.98 5.58 -26.45 -0.15 -1.13 16 26 C -0.16 -1.36 5.73 -26.61 -0.15 -1.51 16 27 C 0.06 0.62 6.84 37.19 0.25 0.87 16 28 O -0.35 -4.40 7.82 -55.80 -0.44 -4.84 16 29 C 0.12 1.33 1.91 -26.76 -0.05 1.28 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 33 H 0.07 0.71 7.38 -51.93 -0.38 0.33 16 34 H 0.08 0.68 4.78 -51.93 -0.25 0.43 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 1.08 7.85 -51.93 -0.41 0.67 16 38 H 0.09 1.12 5.02 -51.93 -0.26 0.86 16 39 H 0.08 1.32 7.70 -51.93 -0.40 0.92 16 40 H 0.08 1.45 7.94 -51.93 -0.41 1.04 16 41 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.02 0.68 8.10 -51.93 -0.42 0.25 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.09 1.37 7.00 -51.93 -0.36 1.01 16 45 H 0.07 0.93 5.79 -51.93 -0.30 0.63 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 48 H 0.08 0.70 6.34 -51.92 -0.33 0.38 16 49 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 389.25 15.07 5.87 5.87 Total: -1.00 -35.44 389.25 -8.69 -44.14 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -8.47 Total: -1.17 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -0.10 Total: 2.95 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -0.40 Total: -42.78 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.57 Total: -25.15 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.44 -8.69 -44.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271769701.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.876 kcal (2) G-P(sol) polarization free energy of solvation -35.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds