Wall clock time and date at job start Tue Mar 31 2020 21:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.46503 * 120.00476 * 2 1 4 4 C 1.34780 * 120.00136 * 179.97438 * 2 1 3 5 5 O 1.21282 * 119.99894 * 3.57342 * 4 2 1 6 6 C 1.50699 * 120.00189 * 183.56916 * 4 2 1 7 7 H 1.08994 * 109.47150 * 320.70946 * 6 4 2 8 8 C 1.53178 * 109.46827 * 80.70352 * 6 4 2 9 9 N 1.46936 * 108.64411 * 174.58663 * 8 6 4 10 10 C 1.34778 * 120.66298 * 126.08212 * 9 8 6 11 11 O 1.21270 * 120.00552 * 179.97438 * 10 9 8 12 12 C 1.50701 * 119.99387 * 359.97438 * 10 9 8 13 13 C 1.53009 * 109.47167 * 180.02562 * 12 10 9 14 14 C 1.50690 * 109.47488 * 179.97438 * 13 12 10 15 15 H 1.08006 * 120.00014 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00290 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99834 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00287 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46717 * 59.99934 * 18 16 14 20 20 H 1.48500 * 109.47334 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47042 * 300.00160 * 18 16 14 22 22 C 1.46873 * 118.68199 * 306.06163 * 9 8 6 23 23 C 1.53266 * 108.92450 * 53.89344 * 22 9 8 24 24 H 1.08996 * 109.71974 * 66.12289 * 23 22 9 25 25 C 1.53361 * 109.24615 * 186.89448 * 23 22 9 26 26 C 1.53190 * 108.44313 * 60.89063 * 25 23 22 27 27 C 1.53053 * 109.29899 * 57.35043 * 26 25 23 28 28 O 1.42949 * 109.52582 * 302.75385 * 27 26 25 29 29 C 1.42814 * 113.95281 * 60.81618 * 28 27 26 30 30 H 1.09003 * 109.32966 * 57.60787 * 29 28 27 31 31 H 1.09000 * 109.47429 * 270.00738 * 1 2 3 32 32 H 1.09002 * 109.46953 * 30.00039 * 1 2 3 33 33 H 1.08998 * 109.47381 * 150.00367 * 1 2 3 34 34 H 1.08990 * 109.47354 * 174.50608 * 3 2 1 35 35 H 1.09004 * 109.46912 * 294.50351 * 3 2 1 36 36 H 1.09002 * 109.47238 * 54.49896 * 3 2 1 37 37 H 1.09003 * 109.61036 * 54.83622 * 8 6 4 38 38 H 1.08997 * 109.60714 * 294.33854 * 8 6 4 39 39 H 1.08999 * 109.47430 * 299.99907 * 12 10 9 40 40 H 1.09003 * 109.47588 * 60.00147 * 12 10 9 41 41 H 1.08999 * 109.46855 * 300.00242 * 13 12 10 42 42 H 1.09003 * 109.46761 * 59.99622 * 13 12 10 43 43 H 0.97003 * 120.00261 * 179.97438 * 17 16 14 44 44 H 1.09005 * 109.55813 * 173.72614 * 22 9 8 45 45 H 1.08999 * 109.56182 * 294.05829 * 22 9 8 46 46 H 1.09003 * 109.56351 * 301.32596 * 25 23 22 47 47 H 1.09008 * 110.09435 * 180.75943 * 25 23 22 48 48 H 1.09009 * 109.49647 * 297.40585 * 26 25 23 49 49 H 1.09000 * 109.50255 * 177.30682 * 26 25 23 50 50 H 1.08994 * 109.46571 * 182.73351 * 27 26 25 51 51 H 1.09004 * 109.45877 * 62.76754 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5342 -2.2166 -0.0645 6 6 3.6436 -1.1685 0.0818 7 1 4.0408 -0.3539 -0.5237 8 6 4.0764 -0.9794 1.5389 9 7 5.5376 -1.1133 1.6162 10 6 6.2877 -0.1453 2.1788 11 8 7.4928 -0.2684 2.2367 12 6 5.6289 1.0902 2.7362 13 6 6.6971 2.0223 3.3117 14 6 6.0384 3.2580 3.8685 15 1 4.9652 3.3679 3.8167 16 6 6.8058 4.2489 4.4431 17 7 8.1127 4.1154 4.5057 18 14 5.9894 5.7811 5.1326 19 1 5.0393 5.3948 6.2066 20 1 7.0261 6.6857 5.6913 21 1 5.2536 6.4803 4.0487 22 6 6.1645 -2.3233 1.0684 23 6 5.7109 -2.5040 -0.3845 24 1 6.1034 -1.6916 -0.9960 25 6 6.2203 -3.8520 -0.9092 26 6 5.6187 -4.9663 -0.0472 27 6 4.0918 -4.8685 -0.0876 28 8 3.6839 -3.5736 0.3597 29 6 4.1808 -2.5004 -0.4410 30 1 3.8574 -2.6402 -1.4725 31 1 -0.3634 0.0001 1.0276 32 1 -0.3633 0.8900 -0.5139 33 1 -0.3634 -0.8900 -0.5138 34 1 3.2650 1.0719 0.0984 35 1 2.0101 1.7965 -0.9352 36 1 1.8624 1.8818 0.8366 37 1 3.6059 -1.7401 2.1619 38 1 3.7812 0.0120 1.8825 39 1 5.0889 1.6042 1.9410 40 1 4.9314 0.8061 3.5242 41 1 7.2374 1.5086 4.1068 42 1 7.3943 2.3064 2.5234 43 1 8.6527 4.8127 4.9096 44 1 7.2490 -2.2195 1.1019 45 1 5.8608 -3.1897 1.6560 46 1 7.3077 -3.8833 -0.8399 47 1 5.9165 -3.9888 -1.9471 48 1 5.9632 -4.8569 0.9812 49 1 5.9317 -5.9356 -0.4351 50 1 3.6617 -5.6297 0.5632 51 1 3.7448 -5.0259 -1.1089 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271769701.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:06 Heat of formation + Delta-G solvation = -137.712215 kcal Electronic energy + Delta-G solvation = -31751.523286 eV Core-core repulsion = 27649.900856 eV Total energy + Delta-G solvation = -4101.622430 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.20564 -40.58929 -40.02068 -37.15779 -36.45997 -35.60499 -35.05964 -33.49792 -32.90055 -31.47021 -28.85843 -28.27158 -27.16539 -26.44346 -26.15515 -24.51168 -23.65825 -23.02111 -20.45821 -20.05198 -19.76363 -18.81362 -18.07114 -17.75968 -17.45367 -17.15906 -16.92045 -16.74489 -16.50184 -16.38312 -16.23558 -15.76776 -15.06739 -14.78006 -14.73233 -14.42666 -14.18896 -14.16171 -14.01503 -13.91853 -13.51736 -13.42443 -13.35867 -13.24534 -13.16252 -13.10338 -12.75056 -12.71061 -12.52954 -12.36574 -12.21855 -11.92531 -11.87029 -11.63923 -11.49485 -11.29080 -11.27731 -10.85589 -10.64961 -10.52089 -10.27404 -9.68498 -9.60692 -8.13894 -6.27624 1.45099 1.46371 1.49532 1.56981 1.67852 1.91849 2.12354 2.46357 2.81031 3.19593 3.32261 3.46826 3.72631 3.74855 3.81286 3.87984 4.00234 4.05001 4.13928 4.19403 4.28602 4.35551 4.38509 4.47542 4.51286 4.53719 4.56378 4.57270 4.66456 4.71586 4.74397 4.81472 4.82448 4.89923 4.97319 5.02308 5.05725 5.06451 5.09678 5.19818 5.33247 5.47494 5.52241 5.56257 5.65929 5.88705 6.20842 6.29350 6.33261 6.39000 6.90506 7.16600 7.22035 7.42678 8.98561 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011822 B = 0.003551 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.886726 B = 7884.171671 C = 9880.726919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.621 5.621 3 C 0.061 3.939 4 C 0.520 3.480 5 O -0.553 6.553 6 C -0.114 4.114 7 H 0.128 0.872 8 C 0.129 3.871 9 N -0.608 5.608 10 C 0.514 3.486 11 O -0.583 6.583 12 C -0.117 4.117 13 C 0.044 3.956 14 C -0.539 4.539 15 H 0.079 0.921 16 C -0.005 4.005 17 N -0.938 5.938 18 Si 0.971 3.029 19 H -0.264 1.264 20 H -0.291 1.291 21 H -0.258 1.258 22 C 0.118 3.882 23 C -0.126 4.126 24 H 0.087 0.913 25 C -0.110 4.110 26 C -0.156 4.156 27 C 0.059 3.941 28 O -0.375 6.375 29 C 0.119 3.881 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.099 0.901 41 H -0.022 1.022 42 H -0.015 1.015 43 H 0.262 0.738 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.064 0.936 49 H 0.093 0.907 50 H 0.097 0.903 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.949 -13.722 -14.857 25.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.354 5.354 3 C -0.081 4.081 4 C 0.306 3.694 5 O -0.430 6.430 6 C -0.136 4.136 7 H 0.146 0.854 8 C 0.006 3.994 9 N -0.341 5.341 10 C 0.305 3.695 11 O -0.462 6.462 12 C -0.157 4.157 13 C 0.006 3.994 14 C -0.577 4.577 15 H 0.097 0.903 16 C -0.203 4.203 17 N -0.578 5.578 18 Si 0.795 3.205 19 H -0.189 1.189 20 H -0.217 1.217 21 H -0.183 1.183 22 C -0.004 4.004 23 C -0.145 4.145 24 H 0.105 0.895 25 C -0.148 4.148 26 C -0.194 4.194 27 C -0.018 4.018 28 O -0.294 6.294 29 C 0.060 3.940 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.117 0.883 41 H -0.003 1.003 42 H 0.003 0.997 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.102 0.898 48 H 0.083 0.917 49 H 0.111 0.889 50 H 0.115 0.885 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.623 -14.218 -14.631 25.101 hybrid contribution 0.461 0.707 0.380 0.925 sum -14.162 -13.510 -14.251 24.212 Atomic orbital electron populations 1.21713 0.78294 1.03587 1.02333 1.47904 1.07896 1.06565 1.73077 1.22205 0.97474 0.84334 1.04083 1.20402 0.89425 0.83451 0.76078 1.90710 1.70328 1.32102 1.49851 1.21804 0.92574 0.99579 0.99646 0.85438 1.21545 0.79166 1.04179 0.94513 1.48126 1.07244 1.19442 1.59309 1.21426 0.86787 0.84813 0.76497 1.90647 1.16831 1.80047 1.58690 1.21684 0.99925 0.92254 1.01789 1.18680 0.93290 0.93258 0.94130 1.21664 0.94470 1.03232 1.38344 0.90277 1.26100 0.95265 1.02461 0.96458 1.70173 1.06399 1.35443 1.45823 0.85422 0.77899 0.78136 0.79082 1.18917 1.21743 1.18287 1.21649 0.98228 0.86547 0.93994 1.22150 0.95911 1.00277 0.96176 0.89479 1.21604 1.01228 0.92054 0.99945 1.22261 0.96071 1.00092 1.00975 1.22660 0.94171 0.84704 1.00248 1.88019 1.73327 1.14327 1.53730 1.21621 0.91544 0.86236 0.94563 0.91699 0.92411 0.88643 0.92005 0.90052 0.89994 0.90052 0.90728 0.87545 0.87083 0.88310 1.00312 0.99652 0.92976 0.90995 0.90707 0.90586 0.89832 0.91713 0.88865 0.88508 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.51 127.77 1.34 2.55 16 2 N -0.62 -10.77 3.27 -871.91 -2.85 -13.63 16 3 C 0.06 0.76 10.17 127.77 1.30 2.06 16 4 C 0.52 11.71 6.80 87.66 0.60 12.31 16 5 O -0.55 -16.35 14.67 16.63 0.24 -16.11 16 6 C -0.11 -2.33 1.64 -11.53 -0.02 -2.35 16 7 H 0.13 2.14 6.51 -2.39 -0.02 2.12 16 8 C 0.13 3.03 5.19 86.36 0.45 3.47 16 9 N -0.61 -17.76 2.97 -818.90 -2.43 -20.19 16 10 C 0.51 19.86 7.70 87.66 0.67 20.54 16 11 O -0.58 -28.37 15.39 -3.00 -0.05 -28.42 16 12 C -0.12 -4.51 3.99 29.85 0.12 -4.39 16 13 C 0.04 2.38 4.26 29.85 0.13 2.51 16 14 C -0.54 -29.51 9.11 25.60 0.23 -29.27 16 15 H 0.08 3.86 7.74 -2.91 -0.02 3.83 16 16 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 17 N -0.94 -58.57 13.29 21.45 0.28 -58.28 16 18 Si 0.97 42.94 29.54 68.60 2.03 44.97 16 19 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 20 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 21 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 22 C 0.12 3.12 5.30 86.40 0.46 3.58 16 23 C -0.13 -2.54 2.74 -10.55 -0.03 -2.56 16 24 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 25 C -0.11 -1.73 5.58 30.78 0.17 -1.56 16 26 C -0.16 -2.37 5.73 30.68 0.18 -2.20 16 27 C 0.06 1.04 6.84 72.00 0.49 1.54 16 28 O -0.38 -8.97 7.82 -129.32 -1.01 -9.98 16 29 C 0.12 2.49 1.91 30.58 0.06 2.55 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 0.87 8.07 -2.39 -0.02 0.85 16 33 H 0.06 1.09 7.38 -2.39 -0.02 1.08 16 34 H 0.08 1.05 4.78 -2.39 -0.01 1.04 16 35 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.07 1.91 7.85 -2.39 -0.02 1.89 16 38 H 0.11 2.23 5.02 -2.39 -0.01 2.22 16 39 H 0.11 3.52 7.70 -2.39 -0.02 3.50 16 40 H 0.10 3.44 7.94 -2.39 -0.02 3.42 16 41 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 42 H -0.01 -0.91 8.10 -2.39 -0.02 -0.93 16 43 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.07 2.22 7.00 -2.38 -0.02 2.21 16 45 H 0.07 1.95 5.79 -2.39 -0.01 1.93 16 46 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 47 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 48 H 0.06 1.14 6.34 -2.38 -0.02 1.12 16 49 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 51 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -80.39 389.25 3.74 -76.65 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.92 Total: 16.05 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 6.61 Total: 8.94 kcal Atomic # 7 Polarization: -87.10 SS G_CDS: -5.00 Total: -92.10 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: -0.81 Total: -54.50 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -80.39 3.74 -76.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271769701.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.061 kcal (2) G-P(sol) polarization free energy of solvation -80.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds