Wall clock time and date at job start Tue Mar 31 2020 22:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 116.99863 * 2 1 4 4 O 1.20831 * 120.00083 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99571 * 180.02562 * 3 2 1 6 6 C 1.53011 * 109.47043 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47086 * 179.97438 * 6 5 3 8 8 N 1.46901 * 109.46994 * 180.02562 * 7 6 5 9 9 C 1.47666 * 111.00009 * 69.87414 * 8 7 6 10 10 C 1.54517 * 107.05150 * 123.12451 * 9 8 7 11 11 C 1.54880 * 102.59717 * 22.99783 * 10 9 8 12 12 H 1.09004 * 110.41580 * 80.15913 * 11 10 9 13 13 C 1.48259 * 111.00356 * 190.44301 * 8 7 6 14 14 H 1.09000 * 111.35914 * 92.73933 * 13 8 7 15 15 C 1.54920 * 108.80808 * 328.65568 * 13 8 7 16 16 C 1.52889 * 109.58049 * 182.99529 * 15 13 8 17 17 C 1.50352 * 109.30615 * 52.99244 * 16 15 13 18 18 O 1.21273 * 118.79626 * 158.31895 * 17 16 15 19 19 N 1.33344 * 122.39801 * 338.34584 * 17 16 15 20 20 C 1.46501 * 117.28686 * 179.75749 * 19 17 16 21 21 C 1.53001 * 109.47215 * 270.01651 * 20 19 17 22 22 C 1.50690 * 109.47346 * 180.02562 * 21 20 19 23 23 H 1.08003 * 120.00143 * 359.97438 * 22 21 20 24 24 C 1.37876 * 120.00109 * 180.02562 * 22 21 20 25 25 N 1.31519 * 119.99860 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00273 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46911 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47182 * 119.99244 * 26 24 22 29 29 H 1.48496 * 109.46895 * 239.99494 * 26 24 22 30 30 H 1.08996 * 109.47119 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47246 * 299.99867 * 1 2 3 32 32 H 1.09006 * 109.47372 * 59.99542 * 1 2 3 33 33 H 1.08992 * 109.47277 * 60.00258 * 5 3 2 34 34 H 1.08999 * 109.47176 * 299.99544 * 5 3 2 35 35 H 1.09001 * 109.46891 * 60.00091 * 6 5 3 36 36 H 1.08995 * 109.47039 * 300.00201 * 6 5 3 37 37 H 1.09001 * 109.47056 * 60.00346 * 7 6 5 38 38 H 1.08995 * 109.47471 * 300.00090 * 7 6 5 39 39 H 1.09005 * 109.91854 * 242.47536 * 9 8 7 40 40 H 1.08995 * 109.91439 * 3.77040 * 9 8 7 41 41 H 1.08998 * 110.78241 * 141.27342 * 10 9 8 42 42 H 1.08993 * 110.78758 * 264.52936 * 10 9 8 43 43 H 1.08997 * 109.25415 * 63.03272 * 15 13 8 44 44 H 1.09005 * 109.51003 * 303.11153 * 15 13 8 45 45 H 1.09002 * 109.49391 * 293.04821 * 16 15 13 46 46 H 1.09001 * 109.50081 * 172.94565 * 16 15 13 47 47 H 1.08997 * 109.47072 * 30.01559 * 20 19 17 48 48 H 1.09002 * 109.47273 * 150.01936 * 20 19 17 49 49 H 1.09007 * 109.47096 * 300.00513 * 21 20 19 50 50 H 1.08998 * 109.46808 * 59.99453 * 21 20 19 51 51 H 0.96996 * 119.99830 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7421 0.0002 7 6 5.5281 2.8221 0.0002 8 7 5.9446 4.2309 0.0016 9 6 5.6398 4.8716 1.2966 10 6 6.9694 5.4331 1.8484 11 6 7.8265 5.5911 0.5681 12 1 7.5571 6.5063 0.0407 13 6 7.4006 4.3547 -0.2492 14 1 7.6106 4.4892 -1.3103 15 6 8.1155 3.1102 0.3339 16 6 9.6265 3.2547 0.1511 17 6 10.0724 4.5724 0.7215 18 8 11.2358 4.7094 1.0354 19 7 9.2353 5.5957 0.8952 20 6 9.7885 6.8267 1.4652 21 6 9.6746 6.7788 2.9902 22 6 10.2431 8.0453 3.5764 23 1 10.6458 8.8080 2.9263 24 6 10.2501 8.2300 4.9427 25 7 9.7601 7.3010 5.7344 26 14 10.9554 9.7996 5.6695 27 1 11.4399 10.6780 4.5745 28 1 9.9009 10.5054 6.4409 29 1 12.0865 9.4630 6.5708 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 3.9556 0.7810 -0.8908 34 1 3.9563 0.7806 0.8892 35 1 3.6108 3.2356 0.8907 36 1 3.6101 3.2368 -0.8893 37 1 5.9178 2.3285 -0.8900 38 1 5.9178 2.3276 0.8899 39 1 4.9262 5.6826 1.1509 40 1 5.2322 4.1347 1.9886 41 1 6.8115 6.3982 2.3297 42 1 7.4294 4.7281 2.5407 43 1 7.7694 2.2188 -0.1893 44 1 7.8844 3.0216 1.3955 45 1 9.8697 3.2169 -0.9108 46 1 10.1352 2.4425 0.6705 47 1 10.8370 6.9191 1.1819 48 1 9.2328 7.6844 1.0861 49 1 8.6261 6.6864 3.2735 50 1 10.2303 5.9211 3.3692 51 1 9.7647 7.4311 6.6955 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272498297.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:05 Heat of formation + Delta-G solvation = -120.704577 kcal Electronic energy + Delta-G solvation = -30204.903291 eV Core-core repulsion = 26104.018367 eV Total energy + Delta-G solvation = -4100.884923 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.98925 -40.73859 -38.62188 -36.99742 -35.64890 -34.37074 -33.33772 -32.76381 -30.84608 -29.31600 -28.58072 -27.96707 -26.14255 -25.05498 -23.61671 -22.87918 -21.95363 -21.03920 -20.58870 -20.05264 -17.97360 -17.89460 -17.08956 -16.99537 -16.61855 -16.42874 -16.12555 -15.63777 -15.44034 -14.84810 -14.57550 -14.43741 -14.24675 -13.88154 -13.66877 -13.40035 -13.30570 -12.92628 -12.66796 -12.55748 -12.52946 -12.36366 -12.25477 -11.82097 -11.73933 -11.58968 -11.49887 -11.32999 -11.22311 -11.18936 -10.96150 -10.92082 -10.81792 -10.78991 -10.62926 -10.48578 -9.81429 -9.80349 -9.31294 -8.98331 -8.46663 -8.33166 -8.03946 -5.99796 -4.01828 1.85414 2.32176 3.07637 3.32129 3.36405 3.40224 3.44620 3.84109 4.32098 4.37848 4.47465 4.49765 4.59961 4.70432 4.71114 4.77409 4.78188 4.80597 4.99358 5.05088 5.10718 5.16813 5.20997 5.26168 5.29059 5.33189 5.37207 5.39533 5.45407 5.69721 5.72858 5.76649 5.84738 5.87429 5.96130 6.04442 6.05824 6.18830 6.28353 6.37330 6.59250 6.75309 6.83051 6.90933 6.95972 7.38176 7.66765 7.76497 8.01539 8.07961 8.39243 8.68340 9.05005 9.61680 11.11685 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015373 B = 0.002315 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.957373 B =12090.982509 C =13307.076607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.459 3.541 4 O -0.504 6.504 5 C -0.112 4.112 6 C -0.107 4.107 7 C 0.050 3.950 8 N -0.519 5.519 9 C 0.040 3.960 10 C -0.152 4.152 11 C 0.143 3.857 12 H 0.093 0.907 13 C 0.067 3.933 14 H 0.103 0.897 15 C -0.147 4.147 16 C -0.132 4.132 17 C 0.510 3.490 18 O -0.547 6.547 19 N -0.589 5.589 20 C 0.108 3.892 21 C 0.014 3.986 22 C -0.518 4.518 23 H 0.056 0.944 24 C 0.058 3.942 25 N -0.894 5.894 26 Si 0.893 3.107 27 H -0.272 1.272 28 H -0.284 1.284 29 H -0.284 1.284 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.044 0.956 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.075 0.925 48 H 0.061 0.939 49 H 0.021 0.979 50 H 0.019 0.981 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.316 -16.082 -14.856 27.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.302 3.698 4 O -0.391 6.391 5 C -0.151 4.151 6 C -0.145 4.145 7 C -0.078 4.078 8 N -0.242 5.242 9 C -0.088 4.088 10 C -0.192 4.192 11 C 0.037 3.963 12 H 0.111 0.889 13 C -0.041 4.041 14 H 0.121 0.879 15 C -0.185 4.185 16 C -0.172 4.172 17 C 0.297 3.703 18 O -0.425 6.425 19 N -0.320 5.320 20 C -0.013 4.013 21 C -0.024 4.024 22 C -0.556 4.556 23 H 0.074 0.926 24 C -0.143 4.143 25 N -0.533 5.533 26 Si 0.721 3.279 27 H -0.197 1.197 28 H -0.211 1.211 29 H -0.210 1.210 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.093 0.907 48 H 0.080 0.920 49 H 0.040 0.960 50 H 0.037 0.963 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.275 -15.517 -14.928 26.991 hybrid contribution 0.424 0.406 1.307 1.433 sum -15.852 -15.112 -13.621 25.791 Atomic orbital electron populations 1.23267 0.76282 1.03691 1.02641 1.86510 1.23544 1.33728 1.84227 1.23885 0.92383 0.81252 0.72269 1.90701 1.67287 1.36301 1.44825 1.21386 0.87215 1.00482 1.05979 1.21433 0.95274 0.93026 1.04729 1.22275 0.94636 0.89597 1.01342 1.63840 1.14102 1.14454 1.31818 1.22977 0.97806 0.99065 0.88978 1.23329 0.94666 1.03387 0.97775 1.21539 0.80964 0.98489 0.95262 0.88898 1.23184 0.86891 0.94017 1.00013 0.87875 1.22551 0.94829 0.98842 1.02320 1.21581 0.96438 0.96256 1.02953 1.19977 0.85854 0.85529 0.78891 1.90734 1.17966 1.82675 1.51116 1.47085 1.07946 1.15194 1.61734 1.21957 0.98922 0.82854 0.97601 1.19415 0.97528 0.97534 0.87925 1.21152 1.39815 1.02940 0.91739 0.92562 1.24989 0.95456 0.96627 0.97262 1.69980 1.46157 1.33516 1.03684 0.86522 0.78787 0.83432 0.79178 1.19687 1.21053 1.21032 0.88102 0.91838 0.91871 0.87479 0.87601 0.90790 0.90039 0.90389 0.93787 0.89981 0.92361 0.89262 0.90571 0.90478 0.90884 0.88745 0.88460 0.90652 0.92014 0.96045 0.96271 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.91 10.57 -39.26 -0.41 -3.32 16 3 C 0.46 4.05 7.96 36.00 0.29 4.34 16 4 O -0.50 -6.06 15.73 -18.75 -0.30 -6.36 16 5 C -0.11 -0.67 5.81 -27.88 -0.16 -0.84 16 6 C -0.11 -0.83 4.54 -26.73 -0.12 -0.95 16 7 C 0.05 0.38 3.36 -3.82 -0.01 0.37 16 8 N -0.52 -5.22 5.15 -221.98 -1.14 -6.36 16 9 C 0.04 0.44 6.18 -2.61 -0.02 0.43 16 10 C -0.15 -2.18 4.70 -24.94 -0.12 -2.30 16 11 C 0.14 2.00 3.14 -67.30 -0.21 1.78 16 12 H 0.09 1.25 8.01 -51.93 -0.42 0.84 16 13 C 0.07 0.73 3.56 -65.32 -0.23 0.49 16 14 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 15 C -0.15 -1.51 3.94 -25.77 -0.10 -1.61 16 16 C -0.13 -1.63 6.09 -28.11 -0.17 -1.80 16 17 C 0.51 9.23 7.47 -11.79 -0.09 9.14 16 18 O -0.55 -12.56 16.20 5.56 0.09 -12.47 16 19 N -0.59 -10.37 2.51 -166.16 -0.42 -10.79 16 20 C 0.11 2.30 5.06 -4.04 -0.02 2.28 16 21 C 0.01 0.36 5.07 -27.89 -0.14 0.22 16 22 C -0.52 -14.79 9.11 -34.45 -0.31 -15.10 16 23 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 24 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 25 N -0.89 -27.08 13.29 55.43 0.74 -26.35 16 26 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 27 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.38 8.13 -51.93 -0.42 -0.05 16 32 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 33 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.68 7.10 -51.93 -0.37 0.31 16 36 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.08 0.50 7.35 -51.93 -0.38 0.12 16 38 H 0.04 0.34 6.80 -51.93 -0.35 -0.01 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.62 6.92 -51.93 -0.36 0.26 16 41 H 0.09 1.44 7.37 -51.93 -0.38 1.05 16 42 H 0.08 1.25 7.35 -51.93 -0.38 0.86 16 43 H 0.08 0.59 6.49 -51.93 -0.34 0.25 16 44 H 0.07 0.86 6.58 -51.93 -0.34 0.52 16 45 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.08 1.75 7.14 -51.93 -0.37 1.38 16 48 H 0.06 1.21 7.90 -51.93 -0.41 0.80 16 49 H 0.02 0.56 6.11 -51.93 -0.32 0.24 16 50 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 396.98 15.07 5.98 5.98 Total: -1.00 -35.52 396.98 -9.55 -45.06 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -8.61 Total: -1.64 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -0.45 Total: -0.69 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -0.83 Total: -43.50 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.62 Total: -22.15 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.52 -9.55 -45.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272498297.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.642 kcal (2) G-P(sol) polarization free energy of solvation -35.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds