Wall clock time and date at job start Tue Mar 31 2020 20:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45193 * 109.47068 * 2 1 4 4 C 1.34229 * 117.00154 * 180.02562 * 3 2 1 5 5 O 1.20832 * 119.99976 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00464 * 179.97438 * 4 3 2 7 7 N 1.46894 * 109.47418 * 174.42750 * 6 4 3 8 8 C 1.46814 * 110.99854 * 300.17667 * 7 6 4 9 9 C 1.53268 * 109.44488 * 189.19813 * 8 7 6 10 10 C 1.53210 * 108.62006 * 304.39911 * 9 8 7 11 11 C 1.52772 * 117.79736 * 266.02273 * 10 9 8 12 12 C 1.52731 * 117.84904 * 197.01182 * 10 9 8 13 13 H 1.08998 * 117.50594 * 215.21747 * 12 10 9 14 14 C 1.50696 * 117.50238 * 0.27020 * 12 10 9 15 15 O 1.21283 * 120.00593 * 0.02562 * 14 12 10 16 16 N 1.34785 * 119.99904 * 179.97438 * 14 12 10 17 17 C 1.46493 * 119.99879 * 179.97438 * 16 14 12 18 18 C 1.53003 * 109.47346 * 180.02562 * 17 16 14 19 19 C 1.50696 * 109.47372 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00312 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99657 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00478 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99704 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47193 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47227 * 119.99675 * 23 21 19 26 26 H 1.48505 * 109.47164 * 239.99783 * 23 21 19 27 27 C 1.53217 * 114.73341 * 51.42303 * 10 9 8 28 28 C 1.46804 * 111.00409 * 64.86810 * 7 6 4 29 29 H 1.09006 * 109.47195 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47393 * 60.00125 * 1 2 3 31 31 H 1.09004 * 109.47399 * 299.99894 * 1 2 3 32 32 H 1.09001 * 109.46796 * 119.99801 * 2 1 3 33 33 H 1.08994 * 109.47128 * 239.99581 * 2 1 3 34 34 H 1.09003 * 109.47172 * 294.42762 * 6 4 3 35 35 H 1.09007 * 109.46949 * 54.42547 * 6 4 3 36 36 H 1.09004 * 109.47710 * 309.18577 * 8 7 6 37 37 H 1.09000 * 109.47313 * 69.20600 * 8 7 6 38 38 H 1.08999 * 109.61096 * 184.66009 * 9 8 7 39 39 H 1.09005 * 109.75298 * 64.21955 * 9 8 7 40 40 H 1.08998 * 117.50190 * 359.63821 * 11 10 9 41 41 H 1.08997 * 117.50606 * 144.66481 * 11 10 9 42 42 H 0.96998 * 119.99694 * 0.02562 * 16 14 12 43 43 H 1.09009 * 109.47767 * 300.00073 * 17 16 14 44 44 H 1.08998 * 109.47301 * 60.00240 * 17 16 14 45 45 H 1.08996 * 109.46771 * 300.00366 * 18 17 16 46 46 H 1.09006 * 109.46924 * 60.00088 * 18 17 16 47 47 H 0.96993 * 120.00097 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.61188 * 188.84007 * 27 10 9 49 49 H 1.08999 * 109.61056 * 68.32138 * 27 10 9 50 50 H 1.08999 * 109.47800 * 290.79948 * 28 7 6 51 51 H 1.08997 * 109.47411 * 50.80653 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 7 5.3817 2.8630 0.1328 8 6 5.7619 2.1931 1.3826 9 6 7.2725 2.3365 1.5992 10 6 7.9977 1.7869 0.3667 11 6 8.4525 0.3288 0.3989 12 6 9.4827 1.4561 0.5012 13 1 10.1191 1.6365 -0.3652 14 6 10.1288 1.6888 1.8425 15 8 9.4719 2.1230 2.7650 16 7 11.4366 1.4135 2.0175 17 6 12.0648 1.6403 3.3213 18 6 13.5427 1.2507 3.2501 19 6 14.1888 1.4834 4.5915 20 1 13.6040 1.8708 5.4126 21 6 15.5268 1.2026 4.7701 22 7 16.2391 0.7313 3.7701 23 14 16.3276 1.4903 6.4331 24 1 15.3175 2.0209 7.3837 25 1 16.8691 0.2080 6.9502 26 1 17.4328 2.4715 6.2872 27 6 7.5090 2.3534 -0.9704 28 6 5.9846 2.2091 -1.0351 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 3.6666 3.4353 -0.9369 35 1 3.5074 3.5019 0.8348 36 1 5.2302 2.6510 2.2168 37 1 5.5022 1.1363 1.3220 38 1 7.5708 1.7708 2.4818 39 1 7.5270 3.3877 1.7350 40 1 8.2420 -0.2443 1.3018 41 1 8.4105 -0.2323 -0.5346 42 1 11.9619 1.0659 1.2798 43 1 11.9797 2.6939 3.5875 44 1 11.5647 1.0334 4.0761 45 1 13.6282 0.1972 2.9838 46 1 14.0426 1.8580 2.4954 47 1 17.1803 0.5335 3.8959 48 1 7.9641 1.7988 -1.7910 49 1 7.7802 3.4067 -1.0425 50 1 5.7194 1.1518 -1.0368 51 1 5.6134 2.6783 -1.9462 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272888866.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:54 Heat of formation + Delta-G solvation = -102.255800 kcal Electronic energy + Delta-G solvation = -29343.020909 eV Core-core repulsion = 25242.935984 eV Total energy + Delta-G solvation = -4100.084924 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.22295 -40.16049 -38.55359 -37.10763 -35.80862 -34.71916 -32.82842 -32.33164 -31.11174 -30.98718 -29.60111 -26.97606 -25.27647 -23.71344 -23.53299 -23.26224 -22.31263 -21.23032 -20.85623 -19.75059 -18.88029 -18.02040 -17.13970 -16.85170 -16.72885 -16.23746 -15.73223 -15.39603 -15.08002 -15.00139 -14.74359 -14.49148 -14.42020 -14.06595 -13.66431 -13.60198 -13.23867 -12.92382 -12.87380 -12.78138 -12.49217 -12.30153 -12.25195 -12.14546 -12.01817 -11.83889 -11.56321 -11.21637 -11.17796 -11.13330 -11.04295 -10.84273 -10.61745 -10.54785 -10.32950 -9.93286 -9.82262 -9.66784 -9.35394 -8.99002 -8.55225 -8.50693 -8.31519 -6.08553 -4.11244 1.79959 2.29872 2.86582 3.28916 3.36344 3.41267 3.49604 3.64359 3.94421 4.32949 4.42184 4.45611 4.53304 4.55694 4.63240 4.74761 4.79338 4.80168 4.88567 5.01297 5.19407 5.21785 5.26792 5.28562 5.29698 5.33311 5.37699 5.47125 5.51940 5.58357 5.70568 5.72158 5.77840 5.94884 5.98190 6.12039 6.12790 6.29723 6.37437 6.38461 6.58224 6.65527 6.76289 6.80294 7.01113 7.38991 7.53840 7.63434 7.90035 8.08747 8.29616 8.73959 8.95192 9.53600 11.03095 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.027682 B = 0.001718 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.237063 B =16295.518541 C =16605.256886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.363 6.363 4 C 0.426 3.574 5 O -0.502 6.502 6 C 0.062 3.938 7 N -0.508 5.508 8 C 0.038 3.962 9 C -0.071 4.071 10 C -0.086 4.086 11 C -0.145 4.145 12 C -0.183 4.183 13 H 0.120 0.880 14 C 0.535 3.465 15 O -0.546 6.546 16 N -0.719 5.719 17 C 0.122 3.878 18 C 0.012 3.988 19 C -0.521 4.521 20 H 0.060 0.940 21 C 0.059 3.941 22 N -0.894 5.894 23 Si 0.896 3.104 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 C -0.077 4.077 28 C 0.043 3.957 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.397 0.603 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.022 0.978 46 H 0.022 0.978 47 H 0.261 0.739 48 H 0.069 0.931 49 H 0.076 0.924 50 H 0.065 0.935 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.929 0.990 -14.006 33.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.279 6.279 4 C 0.267 3.733 5 O -0.390 6.390 6 C -0.069 4.069 7 N -0.232 5.232 8 C -0.089 4.089 9 C -0.108 4.108 10 C -0.087 4.087 11 C -0.183 4.183 12 C -0.205 4.205 13 H 0.138 0.862 14 C 0.321 3.679 15 O -0.425 6.425 16 N -0.368 5.368 17 C 0.000 4.000 18 C -0.026 4.026 19 C -0.559 4.559 20 H 0.078 0.922 21 C -0.143 4.143 22 N -0.533 5.533 23 Si 0.724 3.276 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.114 4.114 28 C -0.084 4.084 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.231 0.769 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.040 0.960 46 H 0.041 0.959 47 H 0.071 0.929 48 H 0.088 0.912 49 H 0.094 0.906 50 H 0.083 0.917 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -29.805 1.403 -13.334 32.681 hybrid contribution 0.710 -1.109 0.366 1.367 sum -29.095 0.294 -12.967 31.855 Atomic orbital electron populations 1.21806 0.92616 1.03013 1.03508 1.23003 0.95397 0.80457 1.02529 1.86557 1.25231 1.32404 1.83748 1.25795 0.80648 0.94564 0.72277 1.90639 1.59688 1.43568 1.45060 1.22260 0.88789 0.89432 1.06382 1.62348 1.03884 1.52937 1.03986 1.22539 0.97823 0.98493 0.90082 1.21367 0.90760 1.02591 0.96091 1.21425 0.92907 0.97072 0.97270 1.23039 1.00598 0.91110 1.03520 1.22359 0.93163 1.07267 0.97684 0.86245 1.19607 0.82245 0.77658 0.88420 1.90616 1.62493 1.46022 1.43377 1.46301 1.09654 1.65264 1.15572 1.21703 0.95896 1.00290 0.82087 1.19332 0.87822 0.97258 0.98167 1.21097 0.94682 1.43682 0.96481 0.92210 1.24999 0.97328 0.94989 0.96990 1.69962 1.07873 1.44452 1.31015 0.86462 0.79345 0.77869 0.83921 1.19585 1.20947 1.20933 1.21206 0.94207 1.01627 0.94392 1.22335 0.94816 0.99278 0.91975 0.90267 0.91495 0.91441 0.91294 0.91370 0.86457 0.86443 0.91131 0.92108 0.88514 0.90825 0.88443 0.88228 0.76928 0.92608 0.92675 0.95961 0.95945 0.92917 0.91227 0.90568 0.91652 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 10.29 37.16 0.38 -0.29 16 2 C 0.06 0.41 6.19 37.16 0.23 0.64 16 3 O -0.36 -3.02 10.22 -39.26 -0.40 -3.42 16 4 C 0.43 3.86 7.37 36.00 0.27 4.13 16 5 O -0.50 -5.91 11.48 -18.75 -0.22 -6.12 16 6 C 0.06 0.44 5.93 -4.98 -0.03 0.41 16 7 N -0.51 -4.86 4.78 -235.89 -1.13 -5.99 16 8 C 0.04 0.43 4.96 -3.73 -0.02 0.41 16 9 C -0.07 -0.95 4.32 -26.48 -0.11 -1.06 16 10 C -0.09 -1.04 2.02 -154.54 -0.31 -1.35 16 11 C -0.15 -1.72 9.63 -26.82 -0.26 -1.98 16 12 C -0.18 -2.40 5.92 -91.88 -0.54 -2.94 16 13 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 14 C 0.53 9.19 7.59 -10.98 -0.08 9.11 16 15 O -0.55 -10.93 13.13 5.56 0.07 -10.85 16 16 N -0.72 -12.87 5.56 -60.29 -0.33 -13.21 16 17 C 0.12 2.65 5.61 -4.04 -0.02 2.63 16 18 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 19 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 20 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 23 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 27 C -0.08 -0.75 5.87 -26.49 -0.16 -0.91 16 28 C 0.04 0.41 5.05 -3.74 -0.02 0.39 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 33 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 34 H 0.12 0.58 8.04 -51.93 -0.42 0.16 16 35 H 0.12 0.66 8.13 -51.92 -0.42 0.23 16 36 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 37 H 0.06 0.78 5.79 -51.93 -0.30 0.48 16 38 H 0.10 1.53 6.00 -51.93 -0.31 1.22 16 39 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 40 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.40 6.25 8.47 -40.82 -0.35 5.90 16 43 H 0.06 1.26 8.14 -51.92 -0.42 0.83 16 44 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 48 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 49 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.07 0.72 5.80 -51.93 -0.30 0.42 16 51 H 0.07 0.54 8.02 -51.93 -0.42 0.12 16 LS Contribution 406.12 15.07 6.12 6.12 Total: -1.00 -32.89 406.12 -10.22 -43.10 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -8.81 Total: 3.46 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -1.23 Total: -4.03 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: -0.73 Total: -44.77 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.54 Total: -20.40 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.89 -10.22 -43.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272888866.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.151 kcal (2) G-P(sol) polarization free energy of solvation -32.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds