Wall clock time and date at job start Tue Mar 31 2020 20:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45193 * 109.47068 * 2 1 4 4 C 1.34229 * 117.00154 * 180.02562 * 3 2 1 5 5 O 1.20832 * 119.99976 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00464 * 179.97438 * 4 3 2 7 7 N 1.46894 * 109.47418 * 174.42750 * 6 4 3 8 8 C 1.46814 * 110.99854 * 300.17667 * 7 6 4 9 9 C 1.53268 * 109.44488 * 189.19813 * 8 7 6 10 10 C 1.53210 * 108.62006 * 304.39911 * 9 8 7 11 11 C 1.52772 * 117.79736 * 266.02273 * 10 9 8 12 12 C 1.52731 * 117.84904 * 197.01182 * 10 9 8 13 13 H 1.08998 * 117.50594 * 215.21747 * 12 10 9 14 14 C 1.50696 * 117.50238 * 0.27020 * 12 10 9 15 15 O 1.21283 * 120.00593 * 0.02562 * 14 12 10 16 16 N 1.34785 * 119.99904 * 179.97438 * 14 12 10 17 17 C 1.46493 * 119.99879 * 179.97438 * 16 14 12 18 18 C 1.53003 * 109.47346 * 180.02562 * 17 16 14 19 19 C 1.50696 * 109.47372 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00312 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99657 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00478 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99704 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47193 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47227 * 119.99675 * 23 21 19 26 26 H 1.48505 * 109.47164 * 239.99783 * 23 21 19 27 27 C 1.53217 * 114.73341 * 51.42303 * 10 9 8 28 28 C 1.46804 * 111.00409 * 64.86810 * 7 6 4 29 29 H 1.09006 * 109.47195 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47393 * 60.00125 * 1 2 3 31 31 H 1.09004 * 109.47399 * 299.99894 * 1 2 3 32 32 H 1.09001 * 109.46796 * 119.99801 * 2 1 3 33 33 H 1.08994 * 109.47128 * 239.99581 * 2 1 3 34 34 H 1.09003 * 109.47172 * 294.42762 * 6 4 3 35 35 H 1.09007 * 109.46949 * 54.42547 * 6 4 3 36 36 H 1.09004 * 109.47710 * 309.18577 * 8 7 6 37 37 H 1.09000 * 109.47313 * 69.20600 * 8 7 6 38 38 H 1.08999 * 109.61096 * 184.66009 * 9 8 7 39 39 H 1.09005 * 109.75298 * 64.21955 * 9 8 7 40 40 H 1.08998 * 117.50190 * 359.63821 * 11 10 9 41 41 H 1.08997 * 117.50606 * 144.66481 * 11 10 9 42 42 H 0.96998 * 119.99694 * 0.02562 * 16 14 12 43 43 H 1.09009 * 109.47767 * 300.00073 * 17 16 14 44 44 H 1.08998 * 109.47301 * 60.00240 * 17 16 14 45 45 H 1.08996 * 109.46771 * 300.00366 * 18 17 16 46 46 H 1.09006 * 109.46924 * 60.00088 * 18 17 16 47 47 H 0.96993 * 120.00097 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.61188 * 188.84007 * 27 10 9 49 49 H 1.08999 * 109.61056 * 68.32138 * 27 10 9 50 50 H 1.08999 * 109.47800 * 290.79948 * 28 7 6 51 51 H 1.08997 * 109.47411 * 50.80653 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 7 5.3817 2.8630 0.1328 8 6 5.7619 2.1931 1.3826 9 6 7.2725 2.3365 1.5992 10 6 7.9977 1.7869 0.3667 11 6 8.4525 0.3288 0.3989 12 6 9.4827 1.4561 0.5012 13 1 10.1191 1.6365 -0.3652 14 6 10.1288 1.6888 1.8425 15 8 9.4719 2.1230 2.7650 16 7 11.4366 1.4135 2.0175 17 6 12.0648 1.6403 3.3213 18 6 13.5427 1.2507 3.2501 19 6 14.1888 1.4834 4.5915 20 1 13.6040 1.8708 5.4126 21 6 15.5268 1.2026 4.7701 22 7 16.2391 0.7313 3.7701 23 14 16.3276 1.4903 6.4331 24 1 15.3175 2.0209 7.3837 25 1 16.8691 0.2080 6.9502 26 1 17.4328 2.4715 6.2872 27 6 7.5090 2.3534 -0.9704 28 6 5.9846 2.2091 -1.0351 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 3.6666 3.4353 -0.9369 35 1 3.5074 3.5019 0.8348 36 1 5.2302 2.6510 2.2168 37 1 5.5022 1.1363 1.3220 38 1 7.5708 1.7708 2.4818 39 1 7.5270 3.3877 1.7350 40 1 8.2420 -0.2443 1.3018 41 1 8.4105 -0.2323 -0.5346 42 1 11.9619 1.0659 1.2798 43 1 11.9797 2.6939 3.5875 44 1 11.5647 1.0334 4.0761 45 1 13.6282 0.1972 2.9838 46 1 14.0426 1.8580 2.4954 47 1 17.1803 0.5335 3.8959 48 1 7.9641 1.7988 -1.7910 49 1 7.7802 3.4067 -1.0425 50 1 5.7194 1.1518 -1.0368 51 1 5.6134 2.6783 -1.9462 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272888866.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:53 Heat of formation + Delta-G solvation = -123.471228 kcal Electronic energy + Delta-G solvation = -29343.940879 eV Core-core repulsion = 25242.935984 eV Total energy + Delta-G solvation = -4101.004894 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.98105 -41.27563 -39.58577 -37.98651 -36.78557 -36.33761 -34.82116 -32.86874 -32.02932 -31.91735 -31.29858 -27.81862 -27.02109 -24.82202 -24.30974 -24.26578 -23.15349 -22.68519 -21.89557 -21.09545 -19.79290 -18.72711 -18.62469 -18.00656 -17.66077 -17.49784 -16.68399 -16.50648 -16.42900 -16.27434 -16.12869 -15.65370 -15.33710 -15.15742 -14.83263 -14.50246 -14.36012 -14.28007 -13.99118 -13.64983 -13.43859 -13.27939 -13.20161 -13.10759 -12.96547 -12.89815 -12.61763 -12.56461 -12.51063 -12.47569 -12.26636 -11.94445 -11.89049 -11.66328 -11.56451 -11.45134 -11.38149 -10.94658 -10.81223 -10.62325 -10.40919 -9.98654 -9.32766 -8.25654 -6.36354 1.12901 1.39825 1.40621 1.53921 1.54303 1.72205 2.22767 2.43606 2.75091 2.90044 3.08946 3.60198 3.68909 3.76062 3.85568 3.92174 3.96846 4.04806 4.06756 4.19079 4.31651 4.36145 4.40590 4.47048 4.49541 4.53053 4.58241 4.63066 4.71865 4.79979 4.83451 4.85571 4.87680 4.90172 4.92744 5.01804 5.11983 5.14471 5.16322 5.29906 5.35690 5.45656 5.53467 5.56152 5.57246 5.77738 5.90826 5.99106 6.14793 6.66486 6.72718 6.77006 7.32892 7.33180 8.86392 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.027682 B = 0.001718 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.237063 B =16295.518541 C =16605.256886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.054 3.946 3 O -0.365 6.365 4 C 0.426 3.574 5 O -0.533 6.533 6 C 0.062 3.938 7 N -0.512 5.512 8 C 0.049 3.951 9 C -0.067 4.067 10 C -0.086 4.086 11 C -0.136 4.136 12 C -0.186 4.186 13 H 0.148 0.852 14 C 0.530 3.470 15 O -0.578 6.578 16 N -0.716 5.716 17 C 0.143 3.857 18 C 0.022 3.978 19 C -0.548 4.548 20 H 0.058 0.942 21 C 0.007 3.993 22 N -0.926 5.926 23 Si 0.966 3.034 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.275 1.275 27 C -0.072 4.072 28 C 0.045 3.955 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.147 0.853 35 H 0.135 0.865 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.127 0.873 42 H 0.409 0.591 43 H 0.045 0.955 44 H 0.043 0.957 45 H 0.008 0.992 46 H 0.009 0.991 47 H 0.266 0.734 48 H 0.090 0.910 49 H 0.077 0.923 50 H 0.050 0.950 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.209 1.531 -15.365 34.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.020 4.020 3 O -0.280 6.280 4 C 0.269 3.731 5 O -0.423 6.423 6 C -0.067 4.067 7 N -0.235 5.235 8 C -0.079 4.079 9 C -0.105 4.105 10 C -0.087 4.087 11 C -0.173 4.173 12 C -0.207 4.207 13 H 0.166 0.834 14 C 0.319 3.681 15 O -0.459 6.459 16 N -0.367 5.367 17 C 0.019 3.981 18 C -0.015 4.015 19 C -0.586 4.586 20 H 0.076 0.924 21 C -0.191 4.191 22 N -0.565 5.565 23 Si 0.790 3.210 24 H -0.190 1.190 25 H -0.202 1.202 26 H -0.201 1.201 27 C -0.109 4.109 28 C -0.082 4.082 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.165 0.835 35 H 0.152 0.848 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.145 0.855 42 H 0.245 0.755 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.026 0.974 46 H 0.027 0.973 47 H 0.075 0.925 48 H 0.109 0.891 49 H 0.095 0.905 50 H 0.069 0.931 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -31.111 1.946 -14.721 34.473 hybrid contribution 1.034 -1.295 0.795 1.838 sum -30.077 0.652 -13.926 33.151 Atomic orbital electron populations 1.21811 0.90601 1.04155 1.03761 1.23173 0.96990 0.79802 1.02004 1.86559 1.24865 1.33184 1.83430 1.26159 0.80657 0.94947 0.71301 1.90636 1.60334 1.44697 1.46619 1.22475 0.87039 0.88556 1.08658 1.62322 1.05639 1.52325 1.03196 1.22316 0.96216 0.97850 0.91527 1.21180 0.92678 1.00858 0.95765 1.21570 0.91766 0.97302 0.98033 1.23096 0.99224 0.90989 1.04017 1.22344 0.93873 1.08742 0.95751 0.83439 1.20355 0.81528 0.76449 0.89802 1.90618 1.63040 1.47219 1.45002 1.46149 1.10282 1.65710 1.14518 1.21182 0.93943 0.99148 0.83843 1.19139 0.89670 0.95951 0.96751 1.21496 0.95444 1.44071 0.97586 0.92411 1.25876 0.97870 0.94484 1.00906 1.70061 1.08366 1.45041 1.33082 0.85384 0.78335 0.78063 0.79179 1.19041 1.20165 1.20097 1.21243 0.94686 1.01760 0.93243 1.22355 0.94470 0.98682 0.92719 0.88709 0.90985 0.91372 0.92212 0.91585 0.83505 0.84760 0.90735 0.93624 0.91693 0.92596 0.90239 0.85469 0.75519 0.93686 0.93870 0.97404 0.97281 0.92514 0.89128 0.90469 0.93149 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.29 71.98 0.74 -0.34 16 2 C 0.05 0.71 6.19 71.98 0.45 1.15 16 3 O -0.36 -5.62 10.22 -51.41 -0.53 -6.14 16 4 C 0.43 7.22 7.37 71.24 0.52 7.75 16 5 O -0.53 -12.33 11.48 21.95 0.25 -12.08 16 6 C 0.06 0.74 5.93 85.56 0.51 1.25 16 7 N -0.51 -8.94 4.78 -900.22 -4.30 -13.24 16 8 C 0.05 1.10 4.96 86.41 0.43 1.53 16 9 C -0.07 -1.85 4.32 30.75 0.13 -1.72 16 10 C -0.09 -2.01 2.02 -52.20 -0.11 -2.11 16 11 C -0.14 -3.08 9.63 30.54 0.29 -2.79 16 12 C -0.19 -4.66 5.92 -11.61 -0.07 -4.73 16 13 H 0.15 2.88 8.14 -2.39 -0.02 2.86 16 14 C 0.53 18.47 7.59 87.65 0.67 19.14 16 15 O -0.58 -24.01 13.13 -3.04 -0.04 -24.05 16 16 N -0.72 -25.99 5.56 -463.05 -2.57 -28.57 16 17 C 0.14 6.36 5.61 86.38 0.48 6.85 16 18 C 0.02 1.16 5.09 29.85 0.15 1.31 16 19 C -0.55 -31.22 9.11 25.60 0.23 -30.98 16 20 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 21 C 0.01 0.42 5.46 84.66 0.46 0.88 16 22 N -0.93 -54.85 13.29 21.45 0.28 -54.57 16 23 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 25 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 26 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 27 C -0.07 -1.23 5.87 30.75 0.18 -1.05 16 28 C 0.04 0.74 5.05 86.41 0.44 1.17 16 29 H 0.09 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 33 H 0.07 0.88 8.13 -2.39 -0.02 0.86 16 34 H 0.15 0.92 8.04 -2.39 -0.02 0.90 16 35 H 0.13 1.17 8.13 -2.38 -0.02 1.15 16 36 H 0.07 1.57 8.08 -2.39 -0.02 1.55 16 37 H 0.05 1.19 5.79 -2.39 -0.01 1.18 16 38 H 0.06 2.19 6.00 -2.39 -0.01 2.18 16 39 H 0.06 1.71 8.12 -2.38 -0.02 1.69 16 40 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.41 12.83 8.47 -92.71 -0.79 12.04 16 43 H 0.04 2.09 8.14 -2.38 -0.02 2.07 16 44 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 47 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 48 H 0.09 1.20 8.08 -2.39 -0.02 1.18 16 49 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.05 1.02 5.80 -2.39 -0.01 1.01 16 51 H 0.10 1.11 8.02 -2.39 -0.02 1.10 16 Total: -1.00 -72.52 406.12 0.77 -71.75 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.13 Total: 23.38 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 5.51 Total: -2.71 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: -6.59 Total: -96.37 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -0.31 Total: -42.27 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -72.52 0.77 -71.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272888866.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.719 kcal (2) G-P(sol) polarization free energy of solvation -72.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds