Wall clock time and date at job start Tue Mar 31 2020 20:55:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.45200 * 109.47030 * 2 1
4 4 C 1.34221 * 116.99709 * 179.97438 * 3 2 1
5 5 O 1.20827 * 120.00216 * 359.97438 * 4 3 2
6 6 C 1.50703 * 119.99993 * 179.97438 * 4 3 2
7 7 N 1.46901 * 109.47410 * 179.97438 * 6 4 3
8 8 C 1.46848 * 110.99528 * 65.64553 * 7 6 4
9 9 C 1.53148 * 109.45467 * 186.35277 * 8 7 6
10 10 C 1.52546 * 109.31555 * 301.74317 * 9 8 7
11 11 C 1.54123 * 110.08162 * 178.10710 * 10 9 8
12 12 C 1.54587 * 101.65242 * 94.64633 * 11 10 9
13 13 N 1.46816 * 105.49771 * 24.98292 * 12 11 10
14 14 C 1.46497 * 124.36519 * 163.07822 * 13 12 11
15 15 C 1.52999 * 109.47419 * 89.99965 * 14 13 12
16 16 C 1.50695 * 109.47492 * 180.02562 * 15 14 13
17 17 H 1.07997 * 119.99919 * 359.97438 * 16 15 14
18 18 C 1.37879 * 119.99889 * 179.97438 * 16 15 14
19 19 N 1.31516 * 119.99431 * 179.97438 * 18 16 15
20 20 Si 1.86796 * 120.00283 * 0.02562 * 18 16 15
21 21 H 1.48503 * 109.47138 * 89.99719 * 20 18 16
22 22 H 1.48490 * 109.47020 * 209.99959 * 20 18 16
23 23 H 1.48500 * 109.46771 * 329.99777 * 20 18 16
24 24 C 1.34577 * 111.27423 * 343.07929 * 13 12 11
25 25 O 1.21279 * 125.02761 * 180.68280 * 24 13 12
26 26 C 1.52534 * 110.49503 * 56.30212 * 10 9 8
27 27 C 1.46856 * 111.00029 * 189.99948 * 7 6 4
28 28 H 1.09003 * 109.47120 * 59.99798 * 1 2 3
29 29 H 1.09005 * 109.47153 * 180.02562 * 1 2 3
30 30 H 1.09001 * 109.47164 * 300.00316 * 1 2 3
31 31 H 1.08996 * 109.46766 * 239.99906 * 2 1 3
32 32 H 1.08998 * 109.46720 * 119.99977 * 2 1 3
33 33 H 1.09001 * 109.47003 * 59.99879 * 6 4 3
34 34 H 1.09003 * 109.47251 * 300.00385 * 6 4 3
35 35 H 1.08993 * 109.47670 * 66.35821 * 8 7 6
36 36 H 1.09000 * 109.47717 * 306.34412 * 8 7 6
37 37 H 1.08995 * 109.50057 * 181.79160 * 9 8 7
38 38 H 1.09004 * 109.49740 * 61.69595 * 9 8 7
39 39 H 1.09006 * 110.99217 * 212.73806 * 11 10 9
40 40 H 1.08997 * 110.99506 * 336.55519 * 11 10 9
41 41 H 1.09007 * 110.24006 * 143.98669 * 12 11 10
42 42 H 1.08997 * 110.24553 * 265.88778 * 12 11 10
43 43 H 1.09000 * 109.47425 * 209.99815 * 14 13 12
44 44 H 1.09003 * 109.47011 * 329.99982 * 14 13 12
45 45 H 1.09000 * 109.46700 * 300.00295 * 15 14 13
46 46 H 1.09003 * 109.47015 * 60.00019 * 15 14 13
47 47 H 0.97003 * 119.99660 * 180.02562 * 19 18 16
48 48 H 1.09005 * 109.50034 * 63.63887 * 26 10 9
49 49 H 1.08999 * 109.49847 * 183.70520 * 26 10 9
50 50 H 1.09007 * 109.47545 * 53.65419 * 27 7 6
51 51 H 1.08997 * 109.47945 * 293.63623 * 27 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3690 0.0000
4 6 3.3447 1.5448 0.0005
5 8 4.0807 0.5866 0.0015
6 6 3.9207 2.9374 0.0000
7 7 5.3877 2.8605 0.0014
8 6 5.8847 2.2674 -1.2467
9 6 7.3984 2.0581 -1.1447
10 6 8.0754 3.3970 -0.8688
11 6 9.5962 3.1993 -0.7157
12 6 10.0954 3.4955 -2.1484
13 7 9.0763 4.3668 -2.7466
14 6 9.2851 5.1803 -3.9470
15 6 8.9034 4.3682 -5.1862
16 6 9.1188 5.2047 -6.4210
17 1 9.4903 6.2148 -6.3309
18 6 8.8414 4.6806 -7.6658
19 7 9.0289 5.4109 -8.7433
20 14 8.1981 2.9338 -7.8215
21 1 6.7140 2.9465 -7.7703
22 1 8.6439 2.3557 -9.1146
23 1 8.7250 2.1108 -6.7034
24 6 7.9257 4.3220 -2.0501
25 8 6.9177 4.9352 -2.3309
26 6 7.5007 4.0364 0.3912
27 6 5.9837 4.1815 0.2389
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3634 -1.0277 0.0005
30 1 -0.3633 0.5139 0.8900
31 1 1.8933 -0.5138 -0.8900
32 1 1.8933 -0.5138 0.8900
33 1 3.5843 3.4700 0.8895
34 1 3.5852 3.4691 -0.8905
35 1 5.6656 2.9360 -2.0792
36 1 5.3956 1.3076 -1.4130
37 1 7.7729 1.6475 -2.0823
38 1 7.6159 1.3660 -0.3312
39 1 10.0126 3.9106 -0.0023
40 1 9.8296 2.1751 -0.4249
41 1 11.0569 4.0080 -2.1144
42 1 10.1822 2.5694 -2.7166
43 1 8.6637 6.0741 -3.8928
44 1 10.3339 5.4703 -4.0115
45 1 9.5249 3.4744 -5.2403
46 1 7.8546 4.0782 -5.1217
47 1 8.8335 5.0423 -9.6190
48 1 7.7213 3.4057 1.2524
49 1 7.9479 5.0198 0.5365
50 1 5.5663 4.6099 1.1502
51 1 5.7641 4.8363 -0.6043
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001272888924.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:55:01
Heat of formation + Delta-G solvation = -116.765894 kcal
Electronic energy + Delta-G solvation = -30787.545644 eV
Core-core repulsion = 26686.831515 eV
Total energy + Delta-G solvation = -4100.714129 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-41.20347 -40.55306 -38.05956 -36.62781 -36.18667 -34.58627 -32.94757 -32.09719
-31.08150 -30.95403 -29.11730 -27.68863 -25.51468 -24.55726 -23.47369 -23.24931
-21.65978 -21.45551 -20.88399 -20.15754 -18.39277 -17.85007 -17.02401 -16.92646
-16.56044 -16.13391 -15.91261 -15.45904 -15.22960 -14.62961 -14.46374 -14.38380
-14.24624 -13.76937 -13.56659 -13.35092 -13.22675 -13.04239 -12.98064 -12.75085
-12.60411 -12.56680 -12.19124 -12.07957 -11.96369 -11.93614 -11.82883 -11.61498
-11.45909 -11.15341 -11.01629 -10.82973 -10.73304 -10.45501 -10.35329 -10.15424
-10.09239 -9.84644 -9.36150 -9.17793 -8.57497 -8.32091 -8.17136 -6.08604
-4.07531 2.06195 2.32737 2.93245 3.29556 3.36317 3.39768 3.44082
3.79812 4.32321 4.42297 4.43515 4.46454 4.59329 4.61784 4.67168
4.86065 4.93473 4.95062 5.03054 5.09141 5.22038 5.25779 5.27349
5.33399 5.38959 5.42780 5.48215 5.58511 5.61860 5.65958 5.70580
5.76072 5.83685 5.84586 5.92121 6.00379 6.03214 6.10201 6.23679
6.24192 6.29489 6.57835 6.78660 6.84455 6.94643 7.17650 7.30557
7.63023 7.63742 7.73370 8.45191 8.58200 8.94411 9.53460 11.04480
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.010744 B = 0.003122 C = 0.002616
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2605.380666 B = 8966.134544 C =10700.629147
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.063 3.937
3 O -0.363 6.363
4 C 0.462 3.538
5 O -0.490 6.490
6 C 0.063 3.937
7 N -0.522 5.522
8 C 0.042 3.958
9 C -0.088 4.088
10 C -0.097 4.097
11 C -0.124 4.124
12 C 0.100 3.900
13 N -0.614 5.614
14 C 0.136 3.864
15 C -0.023 4.023
16 C -0.521 4.521
17 H 0.074 0.926
18 C 0.070 3.930
19 N -0.900 5.900
20 Si 0.880 3.120
21 H -0.277 1.277
22 H -0.287 1.287
23 H -0.267 1.267
24 C 0.522 3.478
25 O -0.528 6.528
26 C -0.087 4.087
27 C 0.044 3.956
28 H 0.067 0.933
29 H 0.079 0.921
30 H 0.066 0.934
31 H 0.069 0.931
32 H 0.069 0.931
33 H 0.116 0.884
34 H 0.079 0.921
35 H 0.048 0.952
36 H 0.087 0.913
37 H 0.071 0.929
38 H 0.082 0.918
39 H 0.081 0.919
40 H 0.089 0.911
41 H 0.077 0.923
42 H 0.069 0.931
43 H 0.075 0.925
44 H 0.071 0.929
45 H 0.016 0.984
46 H 0.015 0.985
47 H 0.264 0.736
48 H 0.078 0.922
49 H 0.070 0.930
50 H 0.073 0.927
51 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.670 -9.102 23.614 26.752
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.011 4.011
3 O -0.280 6.280
4 C 0.304 3.696
5 O -0.376 6.376
6 C -0.066 4.066
7 N -0.248 5.248
8 C -0.085 4.085
9 C -0.126 4.126
10 C -0.100 4.100
11 C -0.162 4.162
12 C -0.024 4.024
13 N -0.346 5.346
14 C 0.016 3.984
15 C -0.062 4.062
16 C -0.559 4.559
17 H 0.092 0.908
18 C -0.132 4.132
19 N -0.539 5.539
20 Si 0.707 3.293
21 H -0.203 1.203
22 H -0.213 1.213
23 H -0.192 1.192
24 C 0.309 3.691
25 O -0.405 6.405
26 C -0.125 4.125
27 C -0.083 4.083
28 H 0.086 0.914
29 H 0.097 0.903
30 H 0.085 0.915
31 H 0.088 0.912
32 H 0.088 0.912
33 H 0.133 0.867
34 H 0.097 0.903
35 H 0.066 0.934
36 H 0.105 0.895
37 H 0.089 0.911
38 H 0.101 0.899
39 H 0.100 0.900
40 H 0.107 0.893
41 H 0.096 0.904
42 H 0.088 0.912
43 H 0.094 0.906
44 H 0.090 0.910
45 H 0.035 0.965
46 H 0.033 0.967
47 H 0.074 0.926
48 H 0.096 0.904
49 H 0.089 0.911
50 H 0.092 0.908
51 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -8.838 -9.343 23.557 26.839
hybrid contribution -0.442 -0.615 -1.049 1.294
sum -9.280 -9.958 22.508 26.304
Atomic orbital electron populations
1.21811 0.92632 1.02963 1.03566 1.23002 0.95312 0.80180 1.02609
1.86489 1.24711 1.32484 1.84333 1.23653 0.80389 0.92861 0.72707
1.90641 1.60036 1.42894 1.43985 1.21530 0.89827 0.90443 1.04786
1.61659 1.02758 1.23828 1.36577 1.22339 0.95785 1.00440 0.89923
1.21340 0.94086 0.94499 1.02646 1.21109 0.96527 0.96777 0.95607
1.22687 0.93550 1.03306 0.96639 1.22076 0.92293 0.94953 0.93041
1.48625 1.13115 1.44674 1.28200 1.21581 1.01125 0.93510 0.82143
1.19881 0.96540 0.96364 0.93389 1.20958 1.44726 1.01176 0.89086
0.90808 1.24972 0.94849 0.97576 0.95766 1.69908 1.48989 1.36928
0.98088 0.86773 0.79648 0.85417 0.77412 1.20255 1.21278 1.19172
1.20492 0.83031 0.81599 0.84014 1.90623 1.30664 1.47274 1.71987
1.21337 0.94561 1.00627 0.95941 1.22327 0.94689 0.89172 1.02128
0.91405 0.90252 0.91485 0.91249 0.91235 0.86654 0.90288 0.93427
0.89452 0.91076 0.89913 0.89994 0.89251 0.90449 0.91243 0.90618
0.91028 0.96541 0.96694 0.92638 0.90357 0.91111 0.90845 0.91109
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.90 10.29 37.16 0.38 -0.52 16
2 C 0.06 0.53 6.19 37.16 0.23 0.76 16
3 O -0.36 -3.86 10.22 -39.24 -0.40 -4.26 16
4 C 0.46 5.50 7.63 36.01 0.27 5.78 16
5 O -0.49 -7.06 14.07 -18.75 -0.26 -7.32 16
6 C 0.06 0.67 5.56 -4.97 -0.03 0.64 16
7 N -0.52 -6.42 4.38 -235.96 -1.03 -7.45 16
8 C 0.04 0.60 4.89 -3.78 -0.02 0.58 16
9 C -0.09 -1.12 4.77 -26.89 -0.13 -1.25 16
10 C -0.10 -1.21 0.55 -155.50 -0.09 -1.30 16
11 C -0.12 -1.23 6.21 -25.31 -0.16 -1.39 16
12 C 0.10 1.25 7.36 -3.04 -0.02 1.23 16
13 N -0.61 -10.45 2.94 -172.47 -0.51 -10.96 16
14 C 0.14 2.77 5.87 -4.04 -0.02 2.75 16
15 C -0.02 -0.57 4.36 -27.89 -0.12 -0.70 16
16 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16
17 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16
18 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16
19 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16
20 Si 0.88 22.30 27.47 -169.99 -4.67 17.63 16
21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16
22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
23 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16
24 C 0.52 8.92 6.32 -11.03 -0.07 8.85 16
25 O -0.53 -10.79 13.85 5.56 0.08 -10.71 16
26 C -0.09 -0.95 4.77 -26.89 -0.13 -1.07 16
27 C 0.04 0.51 5.24 -3.77 -0.02 0.49 16
28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
29 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16
30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
31 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16
32 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16
33 H 0.12 0.92 7.98 -51.93 -0.41 0.51 16
34 H 0.08 0.84 8.13 -51.93 -0.42 0.41 16
35 H 0.05 0.80 6.68 -51.93 -0.35 0.45 16
36 H 0.09 1.29 5.77 -51.93 -0.30 0.99 16
37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16
38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16
39 H 0.08 0.69 7.89 -51.93 -0.41 0.28 16
40 H 0.09 0.72 7.87 -51.93 -0.41 0.31 16
41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16
42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
43 H 0.08 1.64 7.94 -51.93 -0.41 1.23 16
44 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16
45 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16
46 H 0.01 0.39 7.57 -51.93 -0.39 -0.01 16
47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16
48 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16
49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
50 H 0.07 0.69 8.01 -51.93 -0.42 0.27 16
51 H 0.07 1.02 5.78 -51.93 -0.30 0.72 16
LS Contribution 397.57 15.07 5.99 5.99
Total: -1.00 -34.92 397.57 -9.23 -44.15
By element:
Atomic # 1 Polarization: 7.41 SS G_CDS: -8.85 Total: -1.45 kcal
Atomic # 6 Polarization: 1.88 SS G_CDS: -0.35 Total: 1.53 kcal
Atomic # 7 Polarization: -44.80 SS G_CDS: -0.77 Total: -45.57 kcal
Atomic # 8 Polarization: -21.70 SS G_CDS: -0.59 Total: -22.29 kcal
Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal
Total LS contribution 5.99 Total: 5.99 kcal
Total: -34.92 -9.23 -44.15 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001272888924.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -72.613 kcal
(2) G-P(sol) polarization free energy of solvation -34.920 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.532 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.153 kcal
(6) G-S(sol) free energy of system = (1) + (5) -116.766 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds