Wall clock time and date at job start Tue Mar 31 2020 20:55:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.45200 * 109.47030 * 2 1
4 4 C 1.34221 * 116.99709 * 179.97438 * 3 2 1
5 5 O 1.20827 * 120.00216 * 359.97438 * 4 3 2
6 6 C 1.50703 * 119.99993 * 179.97438 * 4 3 2
7 7 N 1.46901 * 109.47410 * 179.97438 * 6 4 3
8 8 C 1.46848 * 110.99528 * 65.64553 * 7 6 4
9 9 C 1.53148 * 109.45467 * 186.35277 * 8 7 6
10 10 C 1.52546 * 109.31555 * 301.74317 * 9 8 7
11 11 C 1.54123 * 110.08162 * 178.10710 * 10 9 8
12 12 C 1.54587 * 101.65242 * 94.64633 * 11 10 9
13 13 N 1.46816 * 105.49771 * 24.98292 * 12 11 10
14 14 C 1.46497 * 124.36519 * 163.07822 * 13 12 11
15 15 C 1.52999 * 109.47419 * 89.99965 * 14 13 12
16 16 C 1.50695 * 109.47492 * 180.02562 * 15 14 13
17 17 H 1.07997 * 119.99919 * 359.97438 * 16 15 14
18 18 C 1.37879 * 119.99889 * 179.97438 * 16 15 14
19 19 N 1.31516 * 119.99431 * 179.97438 * 18 16 15
20 20 Si 1.86796 * 120.00283 * 0.02562 * 18 16 15
21 21 H 1.48503 * 109.47138 * 89.99719 * 20 18 16
22 22 H 1.48490 * 109.47020 * 209.99959 * 20 18 16
23 23 H 1.48500 * 109.46771 * 329.99777 * 20 18 16
24 24 C 1.34577 * 111.27423 * 343.07929 * 13 12 11
25 25 O 1.21279 * 125.02761 * 180.68280 * 24 13 12
26 26 C 1.52534 * 110.49503 * 56.30212 * 10 9 8
27 27 C 1.46856 * 111.00029 * 189.99948 * 7 6 4
28 28 H 1.09003 * 109.47120 * 59.99798 * 1 2 3
29 29 H 1.09005 * 109.47153 * 180.02562 * 1 2 3
30 30 H 1.09001 * 109.47164 * 300.00316 * 1 2 3
31 31 H 1.08996 * 109.46766 * 239.99906 * 2 1 3
32 32 H 1.08998 * 109.46720 * 119.99977 * 2 1 3
33 33 H 1.09001 * 109.47003 * 59.99879 * 6 4 3
34 34 H 1.09003 * 109.47251 * 300.00385 * 6 4 3
35 35 H 1.08993 * 109.47670 * 66.35821 * 8 7 6
36 36 H 1.09000 * 109.47717 * 306.34412 * 8 7 6
37 37 H 1.08995 * 109.50057 * 181.79160 * 9 8 7
38 38 H 1.09004 * 109.49740 * 61.69595 * 9 8 7
39 39 H 1.09006 * 110.99217 * 212.73806 * 11 10 9
40 40 H 1.08997 * 110.99506 * 336.55519 * 11 10 9
41 41 H 1.09007 * 110.24006 * 143.98669 * 12 11 10
42 42 H 1.08997 * 110.24553 * 265.88778 * 12 11 10
43 43 H 1.09000 * 109.47425 * 209.99815 * 14 13 12
44 44 H 1.09003 * 109.47011 * 329.99982 * 14 13 12
45 45 H 1.09000 * 109.46700 * 300.00295 * 15 14 13
46 46 H 1.09003 * 109.47015 * 60.00019 * 15 14 13
47 47 H 0.97003 * 119.99660 * 180.02562 * 19 18 16
48 48 H 1.09005 * 109.50034 * 63.63887 * 26 10 9
49 49 H 1.08999 * 109.49847 * 183.70520 * 26 10 9
50 50 H 1.09007 * 109.47545 * 53.65419 * 27 7 6
51 51 H 1.08997 * 109.47945 * 293.63623 * 27 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3690 0.0000
4 6 3.3447 1.5448 0.0005
5 8 4.0807 0.5866 0.0015
6 6 3.9207 2.9374 0.0000
7 7 5.3877 2.8605 0.0014
8 6 5.8847 2.2674 -1.2467
9 6 7.3984 2.0581 -1.1447
10 6 8.0754 3.3970 -0.8688
11 6 9.5962 3.1993 -0.7157
12 6 10.0954 3.4955 -2.1484
13 7 9.0763 4.3668 -2.7466
14 6 9.2851 5.1803 -3.9470
15 6 8.9034 4.3682 -5.1862
16 6 9.1188 5.2047 -6.4210
17 1 9.4903 6.2148 -6.3309
18 6 8.8414 4.6806 -7.6658
19 7 9.0289 5.4109 -8.7433
20 14 8.1981 2.9338 -7.8215
21 1 6.7140 2.9465 -7.7703
22 1 8.6439 2.3557 -9.1146
23 1 8.7250 2.1108 -6.7034
24 6 7.9257 4.3220 -2.0501
25 8 6.9177 4.9352 -2.3309
26 6 7.5007 4.0364 0.3912
27 6 5.9837 4.1815 0.2389
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3634 -1.0277 0.0005
30 1 -0.3633 0.5139 0.8900
31 1 1.8933 -0.5138 -0.8900
32 1 1.8933 -0.5138 0.8900
33 1 3.5843 3.4700 0.8895
34 1 3.5852 3.4691 -0.8905
35 1 5.6656 2.9360 -2.0792
36 1 5.3956 1.3076 -1.4130
37 1 7.7729 1.6475 -2.0823
38 1 7.6159 1.3660 -0.3312
39 1 10.0126 3.9106 -0.0023
40 1 9.8296 2.1751 -0.4249
41 1 11.0569 4.0080 -2.1144
42 1 10.1822 2.5694 -2.7166
43 1 8.6637 6.0741 -3.8928
44 1 10.3339 5.4703 -4.0115
45 1 9.5249 3.4744 -5.2403
46 1 7.8546 4.0782 -5.1217
47 1 8.8335 5.0423 -9.6190
48 1 7.7213 3.4057 1.2524
49 1 7.9479 5.0198 0.5365
50 1 5.5663 4.6099 1.1502
51 1 5.7641 4.8363 -0.6043
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001272888924.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:55:00
Heat of formation + Delta-G solvation = -139.798079 kcal
Electronic energy + Delta-G solvation = -30788.544394 eV
Core-core repulsion = 26686.831515 eV
Total energy + Delta-G solvation = -4101.712880 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-42.29266 -41.50351 -39.09306 -37.58536 -37.50536 -36.05904 -34.75406 -32.93945
-32.48934 -31.93423 -30.45170 -28.65351 -27.16867 -25.68044 -24.42711 -23.96963
-23.30638 -22.39229 -21.87534 -21.53636 -19.63418 -19.08545 -18.75823 -17.77107
-17.47470 -17.32400 -17.12208 -16.74879 -16.29260 -16.15104 -15.78437 -15.41576
-15.26955 -14.94552 -14.89609 -14.60020 -14.54103 -14.32737 -14.03515 -13.89030
-13.62118 -13.49521 -13.41423 -13.12816 -13.05111 -12.98803 -12.85910 -12.76736
-12.52757 -12.48742 -12.21748 -12.11985 -12.02175 -11.81806 -11.66252 -11.55235
-11.53781 -11.28089 -11.07788 -10.86099 -10.49647 -9.57710 -9.35688 -8.38027
-6.42444 1.14130 1.26690 1.27999 1.39239 1.52631 1.63674 2.14824
2.26975 2.86785 2.96882 3.30757 3.49878 3.64857 3.74759 3.96401
3.98100 4.03751 4.06365 4.13214 4.20797 4.27054 4.29457 4.32800
4.37043 4.46715 4.49415 4.52863 4.64875 4.71827 4.75384 4.76980
4.82789 4.88200 4.90000 4.92126 4.98031 5.07705 5.10772 5.12668
5.13376 5.23792 5.25494 5.33217 5.43314 5.46017 5.73440 5.85153
5.97845 6.16393 6.31545 6.63860 6.73903 7.21244 7.26938 8.78277
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.010744 B = 0.003122 C = 0.002616
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2605.380666 B = 8966.134544 C =10700.629147
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.055 3.945
3 O -0.365 6.365
4 C 0.464 3.536
5 O -0.518 6.518
6 C 0.060 3.940
7 N -0.518 5.518
8 C 0.047 3.953
9 C -0.085 4.085
10 C -0.089 4.089
11 C -0.108 4.108
12 C 0.090 3.910
13 N -0.621 5.621
14 C 0.148 3.852
15 C -0.012 4.012
16 C -0.532 4.532
17 H 0.041 0.959
18 C 0.012 3.988
19 N -0.943 5.943
20 Si 0.945 3.055
21 H -0.278 1.278
22 H -0.274 1.274
23 H -0.250 1.250
24 C 0.508 3.492
25 O -0.572 6.572
26 C -0.084 4.084
27 C 0.043 3.957
28 H 0.064 0.936
29 H 0.099 0.901
30 H 0.072 0.928
31 H 0.062 0.938
32 H 0.073 0.927
33 H 0.147 0.853
34 H 0.074 0.926
35 H 0.010 0.990
36 H 0.076 0.924
37 H 0.060 0.940
38 H 0.106 0.894
39 H 0.105 0.895
40 H 0.119 0.881
41 H 0.098 0.902
42 H 0.071 0.929
43 H 0.051 0.949
44 H 0.088 0.912
45 H 0.026 0.974
46 H -0.006 1.006
47 H 0.268 0.732
48 H 0.105 0.895
49 H 0.077 0.923
50 H 0.101 0.899
51 H 0.037 0.963
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.205 -11.232 26.672 30.081
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.019 4.019
3 O -0.282 6.282
4 C 0.307 3.693
5 O -0.406 6.406
6 C -0.069 4.069
7 N -0.243 5.243
8 C -0.081 4.081
9 C -0.123 4.123
10 C -0.093 4.093
11 C -0.145 4.145
12 C -0.032 4.032
13 N -0.353 5.353
14 C 0.026 3.974
15 C -0.051 4.051
16 C -0.570 4.570
17 H 0.060 0.940
18 C -0.186 4.186
19 N -0.583 5.583
20 Si 0.769 3.231
21 H -0.204 1.204
22 H -0.199 1.199
23 H -0.173 1.173
24 C 0.296 3.704
25 O -0.452 6.452
26 C -0.122 4.122
27 C -0.084 4.084
28 H 0.083 0.917
29 H 0.118 0.882
30 H 0.091 0.909
31 H 0.080 0.920
32 H 0.091 0.909
33 H 0.164 0.836
34 H 0.092 0.908
35 H 0.028 0.972
36 H 0.095 0.905
37 H 0.078 0.922
38 H 0.124 0.876
39 H 0.124 0.876
40 H 0.138 0.862
41 H 0.116 0.884
42 H 0.089 0.911
43 H 0.069 0.931
44 H 0.107 0.893
45 H 0.044 0.956
46 H 0.013 0.987
47 H 0.077 0.923
48 H 0.124 0.876
49 H 0.096 0.904
50 H 0.119 0.881
51 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges -8.358 -11.485 26.648 30.197
hybrid contribution -0.654 0.131 -2.031 2.138
sum -9.013 -11.354 24.617 28.568
Atomic orbital electron populations
1.21827 0.90489 1.04351 1.03686 1.23258 0.96999 0.79146 1.02458
1.86493 1.23987 1.33840 1.83891 1.23862 0.80625 0.92937 0.71829
1.90620 1.60697 1.43798 1.45517 1.21683 0.89074 0.90098 1.06011
1.61728 1.03650 1.24022 1.34936 1.22205 0.97122 0.99049 0.89698
1.21355 0.92848 0.95071 1.02990 1.21121 0.98938 0.95197 0.94006
1.22758 0.90669 1.05859 0.95210 1.22433 0.92035 0.94291 0.94465
1.48717 1.14668 1.44867 1.27075 1.21141 1.01392 0.92542 0.82353
1.19723 0.95318 0.96456 0.93591 1.21277 1.44158 1.00477 0.91095
0.94024 1.25881 0.95126 1.02154 0.95405 1.70036 1.50354 1.39134
0.98812 0.85744 0.78732 0.80252 0.78414 1.20408 1.19893 1.17346
1.21457 0.82174 0.81578 0.85149 1.90602 1.32261 1.49055 1.73303
1.21403 0.93603 1.01467 0.95714 1.22374 0.95841 0.88237 1.01971
0.91692 0.88225 0.90905 0.91952 0.90901 0.83566 0.90779 0.97186
0.90530 0.92154 0.87582 0.87618 0.86227 0.88419 0.91113 0.93079
0.89331 0.95579 0.98743 0.92255 0.87626 0.90410 0.88075 0.94466
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.52 10.29 71.98 0.74 -0.78 16
2 C 0.05 0.89 6.19 71.98 0.45 1.34 16
3 O -0.37 -7.54 10.22 -51.33 -0.52 -8.06 16
4 C 0.46 10.84 7.63 71.24 0.54 11.38 16
5 O -0.52 -14.75 14.07 21.96 0.31 -14.44 16
6 C 0.06 1.22 5.56 85.56 0.48 1.70 16
7 N -0.52 -12.12 4.38 -900.43 -3.95 -16.07 16
8 C 0.05 1.34 4.89 86.36 0.42 1.76 16
9 C -0.08 -2.02 4.77 30.49 0.15 -1.87 16
10 C -0.09 -2.03 0.55 -52.83 -0.03 -2.06 16
11 C -0.11 -1.66 6.21 31.51 0.20 -1.47 16
12 C 0.09 1.98 7.36 86.86 0.64 2.62 16
13 N -0.62 -20.70 2.94 -818.08 -2.40 -23.10 16
14 C 0.15 6.09 5.87 86.38 0.51 6.59 16
15 C -0.01 -0.62 4.36 29.85 0.13 -0.49 16
16 C -0.53 -31.51 9.66 25.60 0.25 -31.26 16
17 H 0.04 2.66 7.99 -2.91 -0.02 2.63 16
18 C 0.01 0.73 5.47 84.65 0.46 1.20 16
19 N -0.94 -59.99 13.96 21.45 0.30 -59.69 16
20 Si 0.94 46.36 27.47 68.60 1.88 48.24 16
21 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16
22 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16
23 H -0.25 -11.45 6.54 99.48 0.65 -10.80 16
24 C 0.51 17.27 6.32 87.71 0.55 17.83 16
25 O -0.57 -24.37 13.85 -3.03 -0.04 -24.41 16
26 C -0.08 -1.58 4.77 30.49 0.15 -1.43 16
27 C 0.04 0.93 5.24 86.36 0.45 1.38 16
28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16
29 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16
30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16
31 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16
32 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16
33 H 0.15 2.03 7.98 -2.39 -0.02 2.01 16
34 H 0.07 1.61 8.13 -2.39 -0.02 1.59 16
35 H 0.01 0.35 6.68 -2.39 -0.02 0.34 16
36 H 0.08 2.31 5.77 -2.39 -0.01 2.29 16
37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16
38 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16
39 H 0.11 1.21 7.89 -2.38 -0.02 1.19 16
40 H 0.12 1.22 7.87 -2.39 -0.02 1.21 16
41 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16
42 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16
43 H 0.05 2.32 7.94 -2.39 -0.02 2.30 16
44 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16
45 H 0.03 1.24 7.20 -2.39 -0.02 1.22 16
46 H -0.01 -0.31 7.57 -2.39 -0.02 -0.33 16
47 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16
48 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16
49 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16
50 H 0.10 1.62 8.01 -2.38 -0.02 1.60 16
51 H 0.04 1.09 5.78 -2.39 -0.01 1.08 16
Total: -1.00 -80.03 397.57 2.50 -77.53
By element:
Atomic # 1 Polarization: 12.72 SS G_CDS: 0.84 Total: 13.57 kcal
Atomic # 6 Polarization: 0.36 SS G_CDS: 6.08 Total: 6.44 kcal
Atomic # 7 Polarization: -92.81 SS G_CDS: -6.05 Total: -98.86 kcal
Atomic # 8 Polarization: -46.65 SS G_CDS: -0.26 Total: -46.91 kcal
Atomic # 14 Polarization: 46.36 SS G_CDS: 1.88 Total: 48.24 kcal
Total: -80.03 2.50 -77.53 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001272888924.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -62.268 kcal
(2) G-P(sol) polarization free energy of solvation -80.028 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.296 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.498 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.530 kcal
(6) G-S(sol) free energy of system = (1) + (5) -139.798 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds