Wall clock time and date at job start Tue Mar 31 2020 20:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45202 * 109.46722 * 2 1 4 4 C 1.34235 * 116.99773 * 184.75726 * 3 2 1 5 5 O 1.20827 * 119.99797 * 354.59235 * 4 3 2 6 6 C 1.50696 * 119.99831 * 174.59454 * 4 3 2 7 7 N 1.46899 * 109.46866 * 173.70227 * 6 4 3 8 8 C 1.46982 * 110.99978 * 294.10115 * 7 6 4 9 9 C 1.53037 * 109.46476 * 175.41291 * 8 7 6 10 10 C 1.53127 * 109.40867 * 59.76802 * 9 8 7 11 11 C 1.53254 * 109.05566 * 301.74672 * 10 9 8 12 12 C 1.45976 * 110.99924 * 169.71488 * 7 6 4 13 13 C 1.53957 * 110.71567 * 307.41979 * 12 7 6 14 14 C 1.51430 * 104.07202 * 94.00062 * 13 12 7 15 15 O 1.21281 * 124.94588 * 195.67971 * 14 13 12 16 16 N 1.34499 * 110.10600 * 15.71703 * 14 13 12 17 17 C 1.46504 * 124.34854 * 180.35384 * 16 14 13 18 18 C 1.52997 * 109.47573 * 274.39092 * 17 16 14 19 19 C 1.50702 * 109.47180 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00038 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99888 * 180.02562 * 19 18 17 22 22 N 1.31513 * 119.99766 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99914 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47146 * 90.00358 * 23 21 19 25 25 H 1.48509 * 109.46919 * 210.00130 * 23 21 19 26 26 H 1.48498 * 109.47380 * 329.99794 * 23 21 19 27 27 C 1.46909 * 111.29951 * 0.38013 * 16 14 13 28 28 H 1.09001 * 109.47614 * 299.99861 * 1 2 3 29 29 H 1.08998 * 109.46815 * 60.00142 * 1 2 3 30 30 H 1.09001 * 109.47181 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47366 * 240.00145 * 2 1 3 32 32 H 1.08998 * 109.46815 * 119.99857 * 2 1 3 33 33 H 1.09002 * 109.47621 * 53.69977 * 6 4 3 34 34 H 1.09002 * 109.46910 * 293.69933 * 6 4 3 35 35 H 1.08996 * 109.47381 * 295.41090 * 8 7 6 36 36 H 1.09004 * 109.47218 * 55.41288 * 8 7 6 37 37 H 1.09007 * 109.48242 * 179.74831 * 9 8 7 38 38 H 1.08996 * 109.48373 * 299.77062 * 9 8 7 39 39 H 1.08999 * 109.53873 * 61.62072 * 10 9 8 40 40 H 1.09000 * 109.53713 * 181.79006 * 10 9 8 41 41 H 1.09005 * 109.48860 * 176.40388 * 11 10 9 42 42 H 1.09005 * 109.49536 * 296.47316 * 11 10 9 43 43 H 1.08996 * 110.51353 * 212.65166 * 13 12 7 44 44 H 1.09003 * 110.50636 * 335.35907 * 13 12 7 45 45 H 1.09005 * 109.46860 * 34.39553 * 17 16 14 46 46 H 1.09006 * 109.46757 * 154.38772 * 17 16 14 47 47 H 1.08998 * 109.46999 * 300.00179 * 18 17 16 48 48 H 1.09005 * 109.46833 * 60.00176 * 18 17 16 49 49 H 0.97000 * 119.99527 * 180.02562 * 22 21 19 50 50 H 1.08998 * 110.27112 * 224.60680 * 27 16 14 51 51 H 1.09001 * 110.34914 * 102.57600 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3408 1.5463 -0.0992 5 8 4.0807 0.5911 -0.0848 6 6 3.9076 2.9366 -0.2285 7 7 5.3741 2.8750 -0.1685 8 6 5.8288 2.4305 1.1566 9 6 7.3506 2.2690 1.1458 10 6 8.0023 3.6108 0.7999 11 6 7.4867 4.0803 -0.5648 12 6 5.9668 4.1590 -0.5303 13 6 5.4199 4.6494 -1.8833 14 6 4.2600 5.5477 -1.5079 15 8 3.3949 5.9209 -2.2715 16 7 4.3294 5.8720 -0.2044 17 6 3.3585 6.7225 0.4886 18 6 3.7450 8.1915 0.3054 19 6 2.7459 9.0664 1.0178 20 1 1.9183 8.6194 1.5485 21 6 2.8884 10.4375 0.9921 22 7 2.0168 11.2010 1.6142 23 14 4.3195 11.2107 0.0735 24 1 3.9207 11.4747 -1.3323 25 1 4.6961 12.4887 0.7295 26 1 5.4793 10.2836 0.0934 27 6 5.5042 5.2642 0.4349 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5364 3.5577 0.5867 34 1 3.6007 3.3669 -1.1818 35 1 5.5474 3.1715 1.9048 36 1 5.3637 1.4749 1.3987 37 1 7.6887 1.9436 2.1298 38 1 7.6320 1.5251 0.4005 39 1 7.7447 4.3480 1.5603 40 1 9.0850 3.4908 0.7604 41 1 7.8969 5.0650 -0.7893 42 1 7.7969 3.3729 -1.3339 43 1 6.1815 5.2139 -2.4212 44 1 5.0726 3.8077 -2.4825 45 1 2.3653 6.5535 0.0726 46 1 3.3540 6.4777 1.5508 47 1 4.7382 8.3605 0.7214 48 1 3.7495 8.4363 -0.7568 49 1 2.1169 12.1656 1.5957 50 1 5.2297 4.8338 1.3979 51 1 6.2918 6.0065 0.5643 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272890136.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:04 Heat of formation + Delta-G solvation = -110.992114 kcal Electronic energy + Delta-G solvation = -31540.804847 eV Core-core repulsion = 27440.341087 eV Total energy + Delta-G solvation = -4100.463759 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.71397 -40.38882 -38.43162 -36.78901 -35.61742 -34.11213 -33.68976 -32.36780 -31.98065 -30.18378 -28.48307 -28.20264 -26.31983 -24.66130 -24.02413 -23.14435 -21.93552 -21.17922 -20.90926 -19.60563 -18.47549 -18.00049 -17.10607 -16.97709 -16.76118 -16.45010 -15.88071 -15.47412 -15.11940 -14.98008 -14.56402 -14.41788 -14.15048 -14.07785 -13.63282 -13.50897 -13.30794 -13.08477 -12.99026 -12.92925 -12.74962 -12.55631 -12.43571 -12.22060 -11.95567 -11.83501 -11.79054 -11.63386 -11.47501 -11.04930 -10.95420 -10.84276 -10.79790 -10.72807 -10.45269 -10.32779 -10.15948 -9.86614 -9.46828 -9.26868 -8.70195 -8.58172 -8.23077 -6.09318 -4.08514 2.02750 2.30988 2.83372 3.29372 3.31932 3.36185 3.38908 3.50673 4.17127 4.26173 4.41675 4.44216 4.55247 4.65132 4.67518 4.68883 4.73759 4.91198 4.95344 4.98402 5.02436 5.08479 5.17388 5.25114 5.31928 5.39357 5.45096 5.46992 5.50806 5.55163 5.60309 5.65387 5.70372 5.72696 5.75717 5.86650 5.88576 5.93592 6.13763 6.23386 6.24707 6.52973 6.56878 6.70939 6.77676 7.13227 7.27174 7.53172 7.62683 7.71422 8.42173 8.47756 8.93334 9.52592 11.03726 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010790 B = 0.003609 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.440717 B = 7756.723702 C = 9342.202777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.358 6.358 4 C 0.466 3.534 5 O -0.492 6.492 6 C 0.053 3.947 7 N -0.503 5.503 8 C 0.045 3.955 9 C -0.112 4.112 10 C -0.125 4.125 11 C -0.097 4.097 12 C 0.107 3.893 13 C -0.152 4.152 14 C 0.506 3.494 15 O -0.526 6.526 16 N -0.615 5.615 17 C 0.137 3.863 18 C -0.024 4.024 19 C -0.522 4.522 20 H 0.074 0.926 21 C 0.070 3.930 22 N -0.900 5.900 23 Si 0.881 3.119 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.267 1.267 27 C 0.071 3.929 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.040 0.960 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.016 0.984 48 H 0.017 0.983 49 H 0.264 0.736 50 H 0.079 0.921 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.248 -23.308 -1.643 25.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.275 6.275 4 C 0.308 3.692 5 O -0.378 6.378 6 C -0.075 4.075 7 N -0.227 5.227 8 C -0.082 4.082 9 C -0.150 4.150 10 C -0.163 4.163 11 C -0.135 4.135 12 C 0.017 3.983 13 C -0.193 4.193 14 C 0.292 3.708 15 O -0.402 6.402 16 N -0.348 5.348 17 C 0.017 3.983 18 C -0.062 4.062 19 C -0.560 4.560 20 H 0.092 0.908 21 C -0.131 4.131 22 N -0.539 5.539 23 Si 0.708 3.292 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.192 1.192 27 C -0.055 4.055 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.137 0.863 35 H 0.058 0.942 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.130 0.870 44 H 0.126 0.874 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.034 0.966 48 H 0.036 0.964 49 H 0.074 0.926 50 H 0.097 0.903 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.017 -23.549 -2.265 25.318 hybrid contribution 0.402 1.104 0.253 1.201 sum 9.419 -22.445 -2.011 24.424 Atomic orbital electron populations 1.21822 0.92517 1.02915 1.03872 1.23017 0.95481 0.80002 1.02465 1.86533 1.24782 1.32542 1.83676 1.23481 0.80593 0.92421 0.72734 1.90638 1.59711 1.42889 1.44575 1.21722 0.89150 0.90878 1.05744 1.61519 1.04296 1.26979 1.29940 1.22344 0.96852 1.00888 0.88118 1.21528 0.93631 0.97853 1.01960 1.21664 1.00306 0.97307 0.96979 1.21446 0.90949 1.02483 0.98594 1.21389 0.96048 0.86612 0.94243 1.22555 0.98566 1.00627 0.97535 1.20814 0.86435 0.81143 0.82363 1.90752 1.38967 1.56789 1.53735 1.48692 1.26172 1.49739 1.10243 1.21609 0.90437 0.90839 0.95443 1.19879 0.97395 0.91541 0.97370 1.20946 1.11052 0.90899 1.33129 0.90825 1.24969 0.96014 0.97225 0.94927 1.69906 1.35931 1.04778 1.43258 0.86762 0.83427 0.78635 0.80336 1.20173 1.21337 1.19224 1.22811 0.89387 0.95914 0.97366 0.91302 0.91293 0.90253 0.91240 0.91293 0.89877 0.86262 0.94206 0.89422 0.91378 0.90780 0.91715 0.91282 0.90437 0.90168 0.87032 0.87385 0.90520 0.91061 0.96565 0.96425 0.92626 0.90324 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.29 37.16 0.38 -0.71 16 2 C 0.06 0.59 6.21 37.16 0.23 0.82 16 3 O -0.36 -4.31 10.22 -39.27 -0.40 -4.71 16 4 C 0.47 5.81 7.50 36.00 0.27 6.08 16 5 O -0.49 -6.81 14.40 -18.75 -0.27 -7.08 16 6 C 0.05 0.64 4.16 -4.98 -0.02 0.62 16 7 N -0.50 -5.41 4.16 -220.35 -0.92 -6.33 16 8 C 0.04 0.44 4.90 -3.76 -0.02 0.42 16 9 C -0.11 -0.90 6.07 -26.65 -0.16 -1.06 16 10 C -0.12 -0.93 5.82 -26.53 -0.15 -1.08 16 11 C -0.10 -0.78 4.66 -26.99 -0.13 -0.91 16 12 C 0.11 1.11 0.71 -131.55 -0.09 1.02 16 13 C -0.15 -1.80 5.44 -27.03 -0.15 -1.94 16 14 C 0.51 8.42 6.09 -10.75 -0.07 8.36 16 15 O -0.53 -11.11 17.66 5.56 0.10 -11.01 16 16 N -0.61 -9.90 2.25 -172.60 -0.39 -10.28 16 17 C 0.14 2.67 5.84 -4.04 -0.02 2.65 16 18 C -0.02 -0.57 4.36 -27.88 -0.12 -0.69 16 19 C -0.52 -14.79 9.66 -34.44 -0.33 -15.13 16 20 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 21 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 22 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 23 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 27 C 0.07 0.86 4.79 -3.38 -0.02 0.84 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.02 7.05 -51.93 -0.37 0.65 16 34 H 0.12 1.54 5.16 -51.93 -0.27 1.27 16 35 H 0.04 0.38 6.19 -51.93 -0.32 0.06 16 36 H 0.09 0.96 6.03 -51.93 -0.31 0.65 16 37 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.49 7.58 -51.93 -0.39 0.10 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.58 8.05 -51.93 -0.42 0.17 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.11 1.15 7.86 -51.93 -0.41 0.74 16 44 H 0.11 1.21 7.39 -51.93 -0.38 0.83 16 45 H 0.08 1.60 8.03 -51.93 -0.42 1.18 16 46 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 47 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 48 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 49 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 50 H 0.08 0.89 5.74 -51.93 -0.30 0.60 16 51 H 0.08 0.95 7.78 -51.93 -0.40 0.55 16 LS Contribution 392.13 15.07 5.91 5.91 Total: -1.00 -34.32 392.13 -8.93 -43.25 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -8.57 Total: -1.43 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -0.50 Total: 1.24 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -0.53 Total: -43.54 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.57 Total: -22.80 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.32 -8.93 -43.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272890136.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.741 kcal (2) G-P(sol) polarization free energy of solvation -34.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds