Wall clock time and date at job start Tue Mar 31 2020 20:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45205 * 109.47013 * 2 1 4 4 C 1.34237 * 116.99777 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00126 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99880 * 180.02562 * 4 3 2 7 7 C 1.52993 * 109.47216 * 180.02562 * 6 4 3 8 8 N 1.46894 * 109.47557 * 179.97438 * 7 6 4 9 9 C 1.48731 * 110.99780 * 60.85095 * 8 7 6 10 10 C 1.55003 * 103.35051 * 158.82097 * 9 8 7 11 11 C 1.54795 * 102.94595 * 323.04408 * 10 9 8 12 12 C 1.47082 * 111.00509 * 178.00719 * 8 7 6 13 13 C 1.53875 * 110.67869 * 336.03672 * 12 8 7 14 14 C 1.54801 * 101.51261 * 96.03794 * 13 12 8 15 15 N 1.46854 * 105.42765 * 25.05889 * 14 13 12 16 16 C 1.46499 * 124.36783 * 163.05589 * 15 14 13 17 17 C 1.53001 * 109.46983 * 269.69371 * 16 15 14 18 18 C 1.50697 * 109.47158 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99987 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00122 * 179.72578 * 18 17 16 21 21 N 1.31515 * 120.00238 * 0.27399 * 20 18 17 22 22 Si 1.86802 * 120.00074 * 180.27975 * 20 18 17 23 23 H 1.48507 * 109.47024 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47400 * 119.99944 * 22 20 18 25 25 H 1.48502 * 109.46820 * 240.00207 * 22 20 18 26 26 C 1.34671 * 111.25867 * 342.78672 * 15 14 13 27 27 O 1.21287 * 125.07706 * 181.09977 * 26 15 14 28 28 H 1.08999 * 109.46917 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46695 * 299.99807 * 1 2 3 30 30 H 1.08994 * 109.47085 * 59.99603 * 1 2 3 31 31 H 1.09000 * 109.47438 * 240.00170 * 2 1 3 32 32 H 1.09001 * 109.47183 * 119.99984 * 2 1 3 33 33 H 1.08997 * 109.47093 * 59.99816 * 6 4 3 34 34 H 1.09003 * 109.46841 * 300.00381 * 6 4 3 35 35 H 1.09004 * 109.46930 * 59.99933 * 7 6 4 36 36 H 1.09003 * 109.47490 * 299.99939 * 7 6 4 37 37 H 1.09001 * 110.64465 * 40.35802 * 9 8 7 38 38 H 1.08994 * 110.64738 * 277.28992 * 9 8 7 39 39 H 1.09010 * 110.71804 * 204.68177 * 10 9 8 40 40 H 1.08993 * 110.87249 * 81.48642 * 10 9 8 41 41 H 1.08994 * 110.37464 * 263.05778 * 11 10 9 42 42 H 1.09005 * 110.46486 * 140.77000 * 11 10 9 43 43 H 1.08998 * 111.00238 * 214.29842 * 13 12 8 44 44 H 1.08997 * 111.00410 * 338.15255 * 13 12 8 45 45 H 1.08993 * 110.37510 * 266.02248 * 14 13 12 46 46 H 1.09004 * 110.18249 * 143.98672 * 14 13 12 47 47 H 1.09002 * 109.46906 * 149.69953 * 16 15 14 48 48 H 1.08994 * 109.47300 * 29.69591 * 16 15 14 49 49 H 1.09002 * 109.46825 * 60.00532 * 17 16 15 50 50 H 1.09000 * 109.47447 * 300.00627 * 17 16 15 51 51 H 0.96997 * 120.00384 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9208 2.9374 0.0012 7 6 5.4486 2.8574 0.0010 8 7 6.0102 4.2148 0.0010 9 6 5.5890 4.9658 1.2138 10 6 6.6561 6.0839 1.3308 11 6 7.9554 5.3717 0.8828 12 6 7.4798 4.1774 0.0487 13 6 7.9699 2.8563 0.6670 14 6 8.2479 2.0077 -0.5975 15 7 8.5120 2.9773 -1.6684 16 6 9.1621 2.6489 -2.9395 17 6 10.6745 2.8348 -2.8017 18 6 11.3434 2.4964 -4.1091 19 1 10.7491 2.1808 -4.9539 20 6 12.7133 2.5957 -4.2285 21 7 13.4370 2.9806 -3.2000 22 14 13.5417 2.1838 -5.8514 23 1 12.5132 1.7793 -6.8434 24 1 14.2708 3.3767 -6.3519 25 1 14.4994 1.0671 -5.6488 26 6 8.0741 4.2060 -1.3335 27 8 8.1476 5.1889 -2.0404 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.5845 3.4693 0.8911 34 1 3.5851 3.4698 -0.8888 35 1 5.7845 2.3256 -0.8892 36 1 5.7847 2.3248 0.8908 37 1 5.6106 4.3206 2.0921 38 1 4.5967 5.3946 1.0749 39 1 6.7413 6.4293 2.3612 40 1 6.4225 6.9148 0.6652 41 1 8.5184 5.0282 1.7505 42 1 8.5661 6.0396 0.2752 43 1 8.8803 3.0102 1.2463 44 1 7.1922 2.3989 1.2784 45 1 7.3779 1.3998 -0.8454 46 1 9.1200 1.3730 -0.4402 47 1 8.7848 3.3080 -3.7214 48 1 8.9457 1.6133 -3.2014 49 1 11.0518 2.1758 -2.0198 50 1 10.8910 3.8705 -2.5397 51 1 14.4008 3.0501 -3.2840 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273469971.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:12 Heat of formation + Delta-G solvation = -108.170073 kcal Electronic energy + Delta-G solvation = -30566.710280 eV Core-core repulsion = 26466.368894 eV Total energy + Delta-G solvation = -4100.341386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.35290 -40.64055 -37.97320 -36.98468 -35.85743 -33.84571 -33.54851 -32.13558 -31.80907 -29.75886 -29.06484 -27.81444 -25.29711 -24.69714 -23.66809 -23.00526 -21.86408 -21.59403 -20.59265 -19.91800 -18.63537 -17.98070 -17.17551 -17.05787 -16.60547 -16.03707 -15.81213 -15.44438 -15.25936 -15.02300 -14.45998 -14.35418 -14.16012 -13.85218 -13.61112 -13.37162 -13.20879 -12.99106 -12.75084 -12.59795 -12.48311 -12.37461 -12.14209 -12.06855 -12.01219 -11.89445 -11.66241 -11.39311 -11.26022 -11.11982 -10.94052 -10.90387 -10.73346 -10.69356 -10.65241 -10.55459 -9.96988 -9.83971 -9.49128 -9.14466 -8.45121 -8.35237 -7.94648 -6.00406 -4.03516 1.91780 2.25850 2.96811 3.32278 3.39095 3.43058 3.52989 3.94714 4.27410 4.35460 4.41871 4.47446 4.51984 4.56791 4.58098 4.68178 4.70850 4.85361 4.86898 4.93494 5.05486 5.11628 5.23438 5.27645 5.35412 5.35838 5.37237 5.44540 5.52666 5.56049 5.59365 5.67090 5.77829 5.82004 5.91618 5.98110 6.01886 6.08799 6.12439 6.21820 6.52024 6.65390 6.73423 6.85036 7.07507 7.44905 7.55599 7.70420 7.89716 8.00037 8.36543 8.76913 9.03508 9.60423 11.11070 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.002687 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.374952 B =10416.973605 C =12034.482238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.360 6.360 4 C 0.464 3.536 5 O -0.505 6.505 6 C -0.112 4.112 7 C 0.044 3.956 8 N -0.489 5.489 9 C 0.030 3.970 10 C -0.120 4.120 11 C -0.113 4.113 12 C 0.067 3.933 13 C -0.165 4.165 14 C 0.100 3.900 15 N -0.610 5.610 16 C 0.129 3.871 17 C 0.012 3.988 18 C -0.520 4.520 19 H 0.057 0.943 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.894 3.106 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.284 1.284 26 C 0.537 3.463 27 O -0.520 6.520 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.017 0.983 50 H 0.021 0.979 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.556 -2.049 14.584 28.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.393 6.393 6 C -0.149 4.149 7 C -0.084 4.084 8 N -0.214 5.214 9 C -0.097 4.097 10 C -0.158 4.158 11 C -0.151 4.151 12 C -0.026 4.026 13 C -0.203 4.203 14 C -0.024 4.024 15 N -0.344 5.344 16 C 0.009 3.991 17 C -0.026 4.026 18 C -0.559 4.559 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.722 3.278 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.210 1.210 26 C 0.322 3.678 27 O -0.394 6.394 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.134 0.866 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.088 0.912 46 H 0.099 0.901 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.035 0.965 50 H 0.039 0.961 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.285 -1.597 13.667 27.912 hybrid contribution 0.924 -1.016 -0.128 1.379 sum -23.361 -2.613 13.539 27.127 Atomic orbital electron populations 1.21810 0.92564 1.03041 1.03562 1.23044 0.95397 0.80098 1.02748 1.86504 1.24593 1.32547 1.84082 1.23685 0.80582 0.92763 0.72303 1.90697 1.60314 1.43245 1.45009 1.21358 0.96166 0.90814 1.06609 1.22424 0.91674 0.90629 1.03681 1.64520 1.04528 1.14029 1.38313 1.23389 0.99812 0.95513 0.90974 1.22510 0.93854 0.97988 1.01438 1.22309 0.98221 0.95662 0.98946 1.21930 0.88741 0.96386 0.95561 1.23371 1.03040 0.95894 0.98030 1.22146 1.01675 0.92267 0.86287 1.48568 1.58697 1.08863 1.18251 1.21792 0.95907 0.99733 0.81683 1.19409 0.88004 0.97781 0.97403 1.21131 0.91956 1.45507 0.97298 0.92429 1.25006 0.97533 0.95182 0.96625 1.69984 1.05858 1.47383 1.29978 0.86497 0.79467 0.77982 0.83826 1.19657 1.20946 1.21021 1.19972 0.77633 0.83058 0.87185 1.90672 1.57221 1.35121 1.56424 0.90185 0.91485 0.91390 0.91074 0.91195 0.87597 0.86602 0.88950 0.92103 0.93310 0.89492 0.90793 0.90249 0.90542 0.89572 0.89160 0.88686 0.91236 0.90056 0.91103 0.91685 0.96503 0.96084 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.29 37.16 0.38 -0.36 16 2 C 0.06 0.45 6.19 37.16 0.23 0.68 16 3 O -0.36 -3.32 10.22 -39.28 -0.40 -3.72 16 4 C 0.46 4.73 7.96 36.00 0.29 5.01 16 5 O -0.51 -6.55 15.73 -18.75 -0.29 -6.84 16 6 C -0.11 -0.94 5.69 -27.89 -0.16 -1.10 16 7 C 0.04 0.46 2.96 -3.83 -0.01 0.45 16 8 N -0.49 -5.86 5.02 -216.78 -1.09 -6.95 16 9 C 0.03 0.27 5.44 -1.75 -0.01 0.26 16 10 C -0.12 -1.16 7.07 -24.73 -0.17 -1.34 16 11 C -0.11 -1.42 6.19 -25.66 -0.16 -1.58 16 12 C 0.07 0.94 0.80 -132.18 -0.11 0.84 16 13 C -0.16 -2.00 5.69 -25.33 -0.14 -2.14 16 14 C 0.10 1.47 6.66 -2.90 -0.02 1.45 16 15 N -0.61 -11.63 2.94 -172.41 -0.51 -12.14 16 16 C 0.13 2.84 5.88 -4.04 -0.02 2.82 16 17 C 0.01 0.32 5.30 -27.88 -0.15 0.17 16 18 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 19 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.34 13.29 55.43 0.74 -26.60 16 22 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.54 10.45 7.05 -11.14 -0.08 10.37 16 27 O -0.52 -12.26 17.13 5.55 0.10 -12.16 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.55 8.13 -51.93 -0.42 0.12 16 32 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 33 H 0.11 0.66 6.98 -51.93 -0.36 0.30 16 34 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.19 6.12 -51.93 -0.32 0.88 16 36 H 0.06 0.61 5.39 -51.93 -0.28 0.33 16 37 H 0.05 0.37 7.98 -51.93 -0.41 -0.05 16 38 H 0.09 0.64 7.71 -51.93 -0.40 0.24 16 39 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 0.81 7.38 -51.93 -0.38 0.43 16 42 H 0.09 1.31 7.43 -51.93 -0.39 0.92 16 43 H 0.09 1.05 7.55 -51.93 -0.39 0.66 16 44 H 0.10 0.94 5.29 -51.93 -0.27 0.67 16 45 H 0.07 0.94 6.40 -51.93 -0.33 0.60 16 46 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.07 1.65 7.93 -51.93 -0.41 1.24 16 48 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 49 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 51 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 LS Contribution 402.84 15.07 6.07 6.07 Total: -1.00 -35.79 402.84 -9.52 -45.31 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -8.57 Total: -1.78 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -0.55 Total: 1.80 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: -0.86 Total: -45.69 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.60 Total: -22.72 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.79 -9.52 -45.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273469971.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.861 kcal (2) G-P(sol) polarization free energy of solvation -35.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds