Wall clock time and date at job start Tue Mar 31 2020 20:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45205 * 109.47013 * 2 1 4 4 C 1.34237 * 116.99777 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00126 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99880 * 180.02562 * 4 3 2 7 7 C 1.52993 * 109.47216 * 180.02562 * 6 4 3 8 8 N 1.46894 * 109.47557 * 179.97438 * 7 6 4 9 9 C 1.48731 * 110.99780 * 60.85095 * 8 7 6 10 10 C 1.55003 * 103.35051 * 158.82097 * 9 8 7 11 11 C 1.54795 * 102.94595 * 323.04408 * 10 9 8 12 12 C 1.47082 * 111.00509 * 178.00719 * 8 7 6 13 13 C 1.53875 * 110.67869 * 336.03672 * 12 8 7 14 14 C 1.54801 * 101.51261 * 96.03794 * 13 12 8 15 15 N 1.46854 * 105.42765 * 25.05889 * 14 13 12 16 16 C 1.46499 * 124.36783 * 163.05589 * 15 14 13 17 17 C 1.53001 * 109.46983 * 269.69371 * 16 15 14 18 18 C 1.50697 * 109.47158 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99987 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00122 * 179.72578 * 18 17 16 21 21 N 1.31515 * 120.00238 * 0.27399 * 20 18 17 22 22 Si 1.86802 * 120.00074 * 180.27975 * 20 18 17 23 23 H 1.48507 * 109.47024 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47400 * 119.99944 * 22 20 18 25 25 H 1.48502 * 109.46820 * 240.00207 * 22 20 18 26 26 C 1.34671 * 111.25867 * 342.78672 * 15 14 13 27 27 O 1.21287 * 125.07706 * 181.09977 * 26 15 14 28 28 H 1.08999 * 109.46917 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46695 * 299.99807 * 1 2 3 30 30 H 1.08994 * 109.47085 * 59.99603 * 1 2 3 31 31 H 1.09000 * 109.47438 * 240.00170 * 2 1 3 32 32 H 1.09001 * 109.47183 * 119.99984 * 2 1 3 33 33 H 1.08997 * 109.47093 * 59.99816 * 6 4 3 34 34 H 1.09003 * 109.46841 * 300.00381 * 6 4 3 35 35 H 1.09004 * 109.46930 * 59.99933 * 7 6 4 36 36 H 1.09003 * 109.47490 * 299.99939 * 7 6 4 37 37 H 1.09001 * 110.64465 * 40.35802 * 9 8 7 38 38 H 1.08994 * 110.64738 * 277.28992 * 9 8 7 39 39 H 1.09010 * 110.71804 * 204.68177 * 10 9 8 40 40 H 1.08993 * 110.87249 * 81.48642 * 10 9 8 41 41 H 1.08994 * 110.37464 * 263.05778 * 11 10 9 42 42 H 1.09005 * 110.46486 * 140.77000 * 11 10 9 43 43 H 1.08998 * 111.00238 * 214.29842 * 13 12 8 44 44 H 1.08997 * 111.00410 * 338.15255 * 13 12 8 45 45 H 1.08993 * 110.37510 * 266.02248 * 14 13 12 46 46 H 1.09004 * 110.18249 * 143.98672 * 14 13 12 47 47 H 1.09002 * 109.46906 * 149.69953 * 16 15 14 48 48 H 1.08994 * 109.47300 * 29.69591 * 16 15 14 49 49 H 1.09002 * 109.46825 * 60.00532 * 17 16 15 50 50 H 1.09000 * 109.47447 * 300.00627 * 17 16 15 51 51 H 0.96997 * 120.00384 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9208 2.9374 0.0012 7 6 5.4486 2.8574 0.0010 8 7 6.0102 4.2148 0.0010 9 6 5.5890 4.9658 1.2138 10 6 6.6561 6.0839 1.3308 11 6 7.9554 5.3717 0.8828 12 6 7.4798 4.1774 0.0487 13 6 7.9699 2.8563 0.6670 14 6 8.2479 2.0077 -0.5975 15 7 8.5120 2.9773 -1.6684 16 6 9.1621 2.6489 -2.9395 17 6 10.6745 2.8348 -2.8017 18 6 11.3434 2.4964 -4.1091 19 1 10.7491 2.1808 -4.9539 20 6 12.7133 2.5957 -4.2285 21 7 13.4370 2.9806 -3.2000 22 14 13.5417 2.1838 -5.8514 23 1 12.5132 1.7793 -6.8434 24 1 14.2708 3.3767 -6.3519 25 1 14.4994 1.0671 -5.6488 26 6 8.0741 4.2060 -1.3335 27 8 8.1476 5.1889 -2.0404 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.5845 3.4693 0.8911 34 1 3.5851 3.4698 -0.8888 35 1 5.7845 2.3256 -0.8892 36 1 5.7847 2.3248 0.8908 37 1 5.6106 4.3206 2.0921 38 1 4.5967 5.3946 1.0749 39 1 6.7413 6.4293 2.3612 40 1 6.4225 6.9148 0.6652 41 1 8.5184 5.0282 1.7505 42 1 8.5661 6.0396 0.2752 43 1 8.8803 3.0102 1.2463 44 1 7.1922 2.3989 1.2784 45 1 7.3779 1.3998 -0.8454 46 1 9.1200 1.3730 -0.4402 47 1 8.7848 3.3080 -3.7214 48 1 8.9457 1.6133 -3.2014 49 1 11.0518 2.1758 -2.0198 50 1 10.8910 3.8705 -2.5397 51 1 14.4008 3.0501 -3.2840 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273469971.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:10 Heat of formation + Delta-G solvation = -132.389957 kcal Electronic energy + Delta-G solvation = -30567.760533 eV Core-core repulsion = 26466.368894 eV Total energy + Delta-G solvation = -4101.391639 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.47415 -41.46125 -39.22283 -37.75493 -37.42448 -35.56820 -34.66493 -33.50794 -32.65415 -30.85523 -30.45868 -28.96310 -27.04116 -25.72137 -24.65459 -23.75847 -23.58312 -22.41676 -21.80613 -20.92545 -19.91629 -18.86091 -18.71320 -18.10157 -17.81042 -17.29073 -16.90506 -16.64174 -16.43268 -16.12544 -16.07480 -15.60884 -15.12486 -14.88690 -14.74936 -14.51814 -14.37995 -14.22602 -14.07654 -13.69268 -13.66303 -13.43363 -13.39058 -13.05498 -12.90362 -12.84917 -12.79770 -12.56742 -12.56058 -12.41608 -12.19353 -12.05269 -11.99656 -11.89646 -11.64653 -11.54097 -11.52603 -11.46869 -11.40536 -10.84779 -10.63100 -9.61192 -9.39283 -8.26239 -6.39181 1.16097 1.36834 1.38559 1.44523 1.51948 1.70000 2.06744 2.39194 2.94241 3.06970 3.25449 3.33891 3.62711 3.66552 3.82307 3.91231 3.97278 4.02041 4.06107 4.10106 4.16581 4.24192 4.31943 4.36540 4.40936 4.54108 4.57624 4.60775 4.65264 4.70965 4.78132 4.85058 4.87771 4.91414 4.93642 4.96008 5.00833 5.06574 5.16311 5.18304 5.27227 5.31052 5.41689 5.47526 5.55498 5.73988 5.80423 5.95815 6.12724 6.27423 6.70937 6.75640 7.22396 7.30596 8.86202 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.002687 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.374952 B =10416.973605 C =12034.482238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.361 6.361 4 C 0.467 3.533 5 O -0.538 6.538 6 C -0.103 4.103 7 C 0.047 3.953 8 N -0.507 5.507 9 C 0.033 3.967 10 C -0.114 4.114 11 C -0.118 4.118 12 C 0.075 3.925 13 C -0.151 4.151 14 C 0.094 3.906 15 N -0.619 5.619 16 C 0.143 3.857 17 C 0.026 3.974 18 C -0.545 4.545 19 H 0.065 0.935 20 C 0.000 4.000 21 N -0.932 5.932 22 Si 0.972 3.028 23 H -0.260 1.260 24 H -0.280 1.280 25 H -0.272 1.272 26 C 0.520 3.480 27 O -0.576 6.576 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.138 0.862 34 H 0.119 0.881 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.099 0.901 42 H 0.047 0.953 43 H 0.097 0.903 44 H 0.129 0.871 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.051 0.949 48 H 0.086 0.914 49 H 0.001 0.999 50 H -0.026 1.026 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.632 -3.032 16.175 31.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.278 6.278 4 C 0.311 3.689 5 O -0.428 6.428 6 C -0.140 4.140 7 C -0.081 4.081 8 N -0.232 5.232 9 C -0.093 4.093 10 C -0.152 4.152 11 C -0.156 4.156 12 C -0.018 4.018 13 C -0.189 4.189 14 C -0.028 4.028 15 N -0.351 5.351 16 C 0.021 3.979 17 C -0.012 4.012 18 C -0.583 4.583 19 H 0.083 0.917 20 C -0.198 4.198 21 N -0.571 5.571 22 Si 0.796 3.204 23 H -0.184 1.184 24 H -0.206 1.206 25 H -0.198 1.198 26 C 0.307 3.693 27 O -0.455 6.455 28 H 0.115 0.885 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.156 0.844 34 H 0.137 0.863 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.082 0.918 41 H 0.118 0.882 42 H 0.066 0.934 43 H 0.116 0.884 44 H 0.146 0.854 45 H 0.104 0.896 46 H 0.097 0.903 47 H 0.070 0.930 48 H 0.104 0.896 49 H 0.019 0.981 50 H -0.007 1.007 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -26.406 -2.601 15.294 30.626 hybrid contribution 1.544 -0.701 -0.628 1.808 sum -24.862 -3.302 14.667 29.054 Atomic orbital electron populations 1.21823 0.90536 1.04278 1.03759 1.23267 0.97012 0.79287 1.02487 1.86508 1.24052 1.33594 1.83670 1.23991 0.80672 0.92999 0.71270 1.90686 1.61014 1.44397 1.46716 1.21328 0.94405 0.90056 1.08260 1.22342 0.93126 0.89744 1.02850 1.64423 1.02873 1.15120 1.40809 1.23547 1.00279 0.95001 0.90445 1.22525 0.92320 0.97656 1.02714 1.22365 0.99623 0.94840 0.98815 1.21762 0.90306 0.98012 0.91711 1.23405 1.04392 0.94202 0.96927 1.22419 1.02234 0.91946 0.86214 1.48677 1.57963 1.10228 1.18218 1.21347 0.92916 1.00386 0.83265 1.19192 0.91304 0.94285 0.96412 1.21554 0.92775 1.45833 0.98152 0.91698 1.26036 0.98284 0.94693 1.00825 1.70118 1.06399 1.48130 1.32486 0.85299 0.78409 0.77970 0.78754 1.18391 1.20559 1.19760 1.21130 0.76908 0.82098 0.89157 1.90616 1.59327 1.36885 1.58668 0.88454 0.90937 0.91483 0.91841 0.91047 0.84413 0.86318 0.91765 0.90906 0.90560 0.87260 0.87707 0.91828 0.88226 0.93430 0.88435 0.85353 0.89613 0.90267 0.93022 0.89588 0.98090 1.00712 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.29 71.98 0.74 -0.40 16 2 C 0.05 0.71 6.19 71.98 0.45 1.16 16 3 O -0.36 -5.99 10.22 -51.48 -0.53 -6.52 16 4 C 0.47 8.62 7.96 71.24 0.57 9.19 16 5 O -0.54 -13.28 15.73 21.97 0.35 -12.93 16 6 C -0.10 -1.45 5.69 29.85 0.17 -1.28 16 7 C 0.05 0.89 2.96 86.30 0.26 1.15 16 8 N -0.51 -11.18 5.02 -839.75 -4.21 -15.39 16 9 C 0.03 0.46 5.44 86.63 0.47 0.93 16 10 C -0.11 -1.95 7.07 31.89 0.23 -1.72 16 11 C -0.12 -2.89 6.19 31.29 0.19 -2.69 16 12 C 0.08 2.07 0.80 3.05 0.00 2.08 16 13 C -0.15 -3.39 5.69 31.50 0.18 -3.21 16 14 C 0.09 2.73 6.66 86.93 0.58 3.31 16 15 N -0.62 -24.56 2.94 -817.83 -2.41 -26.97 16 16 C 0.14 6.61 5.88 86.38 0.51 7.12 16 17 C 0.03 1.48 5.30 29.85 0.16 1.64 16 18 C -0.54 -32.42 9.11 25.60 0.23 -32.19 16 19 H 0.06 3.67 7.74 -2.91 -0.02 3.65 16 20 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 21 N -0.93 -58.63 13.29 21.45 0.28 -58.34 16 22 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 23 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 C 0.52 21.22 7.05 87.60 0.62 21.84 16 27 O -0.58 -29.22 17.13 -3.05 -0.05 -29.28 16 28 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 32 H 0.07 0.93 8.13 -2.39 -0.02 0.91 16 33 H 0.14 1.08 6.98 -2.39 -0.02 1.06 16 34 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 1.60 6.12 -2.38 -0.01 1.59 16 36 H 0.07 1.20 5.39 -2.39 -0.01 1.18 16 37 H 0.08 0.70 7.98 -2.39 -0.02 0.68 16 38 H 0.11 1.08 7.71 -2.39 -0.02 1.06 16 39 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.10 1.93 7.38 -2.39 -0.02 1.91 16 42 H 0.05 1.53 7.43 -2.38 -0.02 1.51 16 43 H 0.10 2.07 7.55 -2.39 -0.02 2.05 16 44 H 0.13 2.05 5.29 -2.39 -0.01 2.04 16 45 H 0.09 2.24 6.40 -2.39 -0.02 2.22 16 46 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 47 H 0.05 2.56 7.93 -2.39 -0.02 2.54 16 48 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 49 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 50 H -0.03 -1.67 8.14 -2.39 -0.02 -1.69 16 51 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -83.47 402.84 2.18 -81.29 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.91 Total: 13.09 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 5.81 Total: 7.35 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -6.33 Total: -100.71 kcal Atomic # 8 Polarization: -48.50 SS G_CDS: -0.23 Total: -48.73 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -83.47 2.18 -81.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273469971.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.103 kcal (2) G-P(sol) polarization free energy of solvation -83.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds