Wall clock time and date at job start Tue Mar 31 2020 21:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99821 * 2 1 4 4 C 1.53006 * 109.46748 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 3 2 6 6 N 1.46906 * 109.46904 * 179.97438 * 5 4 3 7 7 C 1.46841 * 110.99738 * 45.85329 * 6 5 4 8 8 C 1.53043 * 109.63129 * 186.22332 * 7 6 5 9 9 C 1.53229 * 109.20453 * 300.37609 * 8 7 6 10 10 C 1.52526 * 109.19876 * 56.76542 * 9 8 7 11 11 C 1.53739 * 110.30312 * 181.31723 * 10 9 8 12 12 C 1.51456 * 103.35766 * 241.31853 * 11 10 9 13 13 O 1.21227 * 125.40931 * 179.97438 * 12 11 10 14 14 N 1.33951 * 109.17286 * 0.02562 * 12 11 10 15 15 C 1.46507 * 122.77864 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47016 * 269.95793 * 15 14 12 17 17 C 1.50706 * 109.46550 * 180.02562 * 16 15 14 18 18 H 1.07991 * 120.00445 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99546 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99893 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99913 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47098 * 90.00131 * 21 19 17 23 23 H 1.48499 * 109.47144 * 209.99953 * 21 19 17 24 24 H 1.48500 * 109.47504 * 330.00101 * 21 19 17 25 25 C 1.34046 * 114.43879 * 359.97438 * 14 12 11 26 26 O 1.21219 * 125.50692 * 179.97438 * 25 14 12 27 27 C 1.46952 * 111.00098 * 169.99859 * 6 5 4 28 28 H 1.08993 * 109.47448 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47367 * 300.00715 * 1 2 3 30 30 H 1.09000 * 109.46841 * 59.99911 * 1 2 3 31 31 H 1.09000 * 109.47490 * 59.99859 * 3 2 1 32 32 H 1.09001 * 109.47232 * 299.99213 * 3 2 1 33 33 H 1.08993 * 109.46955 * 299.99993 * 4 3 2 34 34 H 1.09000 * 109.47050 * 59.99822 * 4 3 2 35 35 H 1.08993 * 109.47839 * 299.99931 * 5 4 3 36 36 H 1.09000 * 109.47160 * 60.00369 * 5 4 3 37 37 H 1.09003 * 109.44928 * 306.27088 * 7 6 5 38 38 H 1.08999 * 109.44731 * 66.17039 * 7 6 5 39 39 H 1.09002 * 109.51875 * 180.45357 * 8 7 6 40 40 H 1.08998 * 109.51481 * 60.29120 * 8 7 6 41 41 H 1.09002 * 109.51752 * 296.84786 * 9 8 7 42 42 H 1.08999 * 109.51504 * 176.68390 * 9 8 7 43 43 H 1.08996 * 110.64694 * 359.78729 * 11 10 9 44 44 H 1.09002 * 110.64312 * 122.85159 * 11 10 9 45 45 H 1.08994 * 109.47419 * 29.96657 * 15 14 12 46 46 H 1.09006 * 109.46920 * 149.96336 * 15 14 12 47 47 H 1.08991 * 109.47265 * 300.00084 * 16 15 14 48 48 H 1.09000 * 109.46931 * 60.00925 * 16 15 14 49 49 H 0.96994 * 119.99749 * 179.97438 * 20 19 17 50 50 H 1.08999 * 109.45494 * 295.20817 * 27 6 5 51 51 H 1.09002 * 109.44762 * 55.16120 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6222 2.4664 0.0012 7 6 6.0721 1.4722 -0.9813 8 6 7.5823 1.2636 -0.8471 9 6 8.2987 2.5961 -1.0904 10 6 7.7673 3.6375 -0.1109 11 6 8.4466 4.9949 -0.3548 12 6 9.1537 5.2728 0.9554 13 8 9.8212 6.2550 1.1988 14 7 8.9252 4.2602 1.8020 15 6 9.4714 4.2238 3.1610 16 6 10.8373 3.5345 3.1434 17 6 11.3987 3.4967 4.5414 18 1 10.8374 3.9213 5.3605 19 6 12.6292 2.9198 4.7747 20 7 13.1190 2.8863 5.9948 21 14 13.6004 2.1860 3.3578 22 1 14.4782 3.2281 2.7672 23 1 14.4330 1.0626 3.8577 24 1 12.6622 1.6840 2.3220 25 6 8.1546 3.2834 1.3032 26 8 7.8231 2.2775 1.8929 27 6 6.2540 3.7715 -0.2376 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8465 0.8900 32 1 1.6887 1.8464 -0.8901 33 1 3.8567 0.6439 0.8908 34 1 3.8574 0.6435 -0.8891 35 1 3.8365 3.1228 -0.8904 36 1 3.8358 3.1238 0.8896 37 1 5.5581 0.5276 -0.8033 38 1 5.8425 1.8258 -1.9865 39 1 7.9156 0.5314 -1.5826 40 1 7.8125 0.9043 0.1558 41 1 8.1127 2.9284 -2.1117 42 1 9.3702 2.4664 -0.9382 43 1 9.1648 4.9240 -1.1716 44 1 7.7033 5.7650 -0.5612 45 1 9.5827 5.2414 3.5352 46 1 8.7933 3.6700 3.8104 47 1 10.7259 2.5169 2.7692 48 1 11.5154 4.0883 2.4940 49 1 13.9844 2.4802 6.1589 50 1 6.0029 4.1184 -1.2399 51 1 5.8909 4.4904 0.4969 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273474322.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:36 Heat of formation + Delta-G solvation = -134.886403 kcal Electronic energy + Delta-G solvation = -30681.700629 eV Core-core repulsion = 26580.200735 eV Total energy + Delta-G solvation = -4101.499894 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.21367 -40.22552 -39.28080 -38.71581 -36.96599 -36.46487 -35.19852 -33.75145 -32.43555 -31.99817 -28.90047 -27.89469 -27.17107 -26.31586 -25.32001 -23.97779 -23.40823 -23.19590 -21.73280 -21.27251 -19.66462 -19.18092 -17.83000 -17.62022 -17.55357 -17.21860 -17.10918 -16.75861 -16.37887 -16.00404 -15.82561 -15.68659 -15.38059 -15.19280 -15.11058 -14.96123 -14.89426 -14.66520 -14.39615 -13.97870 -13.73936 -13.50129 -13.27623 -13.13668 -13.03123 -13.01558 -12.72208 -12.59596 -12.32263 -12.15948 -12.04035 -11.98964 -11.90191 -11.88283 -11.68873 -11.42369 -11.38005 -11.07618 -10.86974 -10.71954 -10.61036 -10.60432 -9.07738 -8.38888 -6.44750 0.59845 1.26910 1.29199 1.40523 1.62437 1.83303 2.27276 2.60692 2.94985 3.00113 3.18783 3.27156 3.49769 3.61419 3.97125 3.99108 4.09702 4.14745 4.19518 4.20234 4.28159 4.35258 4.41800 4.47147 4.47716 4.51639 4.56019 4.58037 4.59555 4.61287 4.63445 4.72915 4.75576 4.76879 4.83890 4.86147 4.95386 5.06267 5.11742 5.14792 5.19287 5.22815 5.26473 5.47808 5.49786 5.99141 6.12399 6.17217 6.21660 6.28712 6.46586 6.59811 6.89086 7.19621 8.77373 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.002690 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.442575 B =10407.388755 C =11076.510535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.422 6.422 3 C 0.063 3.937 4 C -0.118 4.118 5 C 0.068 3.932 6 N -0.559 5.559 7 C 0.058 3.942 8 C -0.130 4.130 9 C -0.100 4.100 10 C -0.081 4.081 11 C -0.129 4.129 12 C 0.516 3.484 13 O -0.525 6.525 14 N -0.584 5.584 15 C 0.121 3.879 16 C -0.008 4.008 17 C -0.535 4.535 18 H 0.040 0.960 19 C 0.011 3.989 20 N -0.941 5.941 21 Si 0.948 3.052 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.257 1.257 25 C 0.527 3.473 26 O -0.487 6.487 27 C 0.081 3.919 28 H 0.092 0.908 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.121 0.879 42 H 0.060 0.940 43 H 0.151 0.849 44 H 0.158 0.842 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.014 0.986 48 H 0.014 0.986 49 H 0.270 0.730 50 H 0.092 0.908 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.224 -0.195 -25.162 34.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C -0.014 4.014 4 C -0.155 4.155 5 C -0.059 4.059 6 N -0.284 5.284 7 C -0.069 4.069 8 C -0.167 4.167 9 C -0.137 4.137 10 C -0.085 4.085 11 C -0.168 4.168 12 C 0.307 3.693 13 O -0.400 6.400 14 N -0.326 5.326 15 C -0.001 4.001 16 C -0.046 4.046 17 C -0.574 4.574 18 H 0.059 0.941 19 C -0.187 4.187 20 N -0.581 5.581 21 Si 0.771 3.229 22 H -0.188 1.188 23 H -0.200 1.200 24 H -0.181 1.181 25 C 0.317 3.683 26 O -0.357 6.357 27 C -0.047 4.047 28 H 0.111 0.889 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.139 0.861 42 H 0.079 0.921 43 H 0.169 0.831 44 H 0.176 0.824 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.032 0.968 48 H 0.033 0.967 49 H 0.079 0.921 50 H 0.110 0.890 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.668 -0.618 -24.097 33.782 hybrid contribution 0.556 0.002 0.279 0.622 sum -23.112 -0.616 -23.818 33.194 Atomic orbital electron populations 1.22904 0.79531 1.03676 1.00887 1.87841 1.21485 1.29202 1.95628 1.22531 0.93433 0.84271 1.01125 1.21583 0.93284 0.97634 1.03042 1.21905 0.86027 0.96143 1.01799 1.61802 1.06823 1.07986 1.51768 1.22146 0.95057 0.96183 0.93496 1.21728 0.95333 0.97431 1.02239 1.21568 0.99578 0.93383 0.99183 1.21231 0.98985 0.97117 0.91190 1.22727 1.02342 0.97461 0.94311 1.21764 0.79020 0.80481 0.88029 1.90747 1.39109 1.29540 1.80630 1.47316 1.46623 1.22608 1.16086 1.21475 0.95646 1.01865 0.81082 1.19630 0.93333 0.95544 0.96099 1.21170 1.04056 1.38838 0.93306 0.94126 1.25930 0.98475 0.95749 0.98554 1.70031 1.19731 1.46107 1.22198 0.85693 0.78818 0.78833 0.79554 1.18784 1.19955 1.18094 1.21226 0.75750 0.81318 0.90035 1.90714 1.52858 1.25951 1.66179 1.21933 0.88732 0.91184 1.02885 0.88912 0.93467 0.92758 0.92923 0.91569 0.92724 0.90431 0.92240 0.91038 0.90557 0.92352 0.89487 0.93490 0.86084 0.92122 0.83132 0.82449 0.90337 0.90594 0.96808 0.96733 0.92109 0.89003 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.57 10.70 -148.98 -1.59 -9.16 16 3 C 0.06 0.86 5.94 71.98 0.43 1.29 16 4 C -0.12 -1.83 4.84 30.60 0.15 -1.68 16 5 C 0.07 0.94 5.28 86.30 0.46 1.39 16 6 N -0.56 -10.00 4.17 -897.28 -3.75 -13.75 16 7 C 0.06 0.91 4.85 86.33 0.42 1.33 16 8 C -0.13 -2.43 5.81 30.69 0.18 -2.25 16 9 C -0.10 -1.55 4.60 30.51 0.14 -1.41 16 10 C -0.08 -1.51 0.69 -52.98 -0.04 -1.55 16 11 C -0.13 -1.98 6.30 30.34 0.19 -1.79 16 12 C 0.52 15.54 8.09 88.03 0.71 16.25 16 13 O -0.53 -19.96 17.48 -2.87 -0.05 -20.01 16 14 N -0.58 -20.59 2.56 -756.74 -1.94 -22.53 16 15 C 0.12 5.34 5.50 86.38 0.47 5.82 16 16 C -0.01 -0.41 4.37 29.85 0.13 -0.28 16 17 C -0.54 -32.73 9.66 25.60 0.25 -32.48 16 18 H 0.04 2.68 7.99 -2.92 -0.02 2.65 16 19 C 0.01 0.67 5.47 84.66 0.46 1.14 16 20 N -0.94 -60.67 13.96 21.45 0.30 -60.37 16 21 Si 0.95 46.67 27.47 68.60 1.88 48.55 16 22 H -0.26 -12.36 7.11 99.48 0.71 -11.66 16 23 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.26 -12.12 6.54 99.48 0.65 -11.47 16 25 C 0.53 16.70 6.52 87.81 0.57 17.28 16 26 O -0.49 -19.15 15.02 -2.84 -0.04 -19.19 16 27 C 0.08 1.13 3.96 86.11 0.34 1.47 16 28 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 1.15 6.20 -2.39 -0.01 1.13 16 35 H 0.06 0.53 8.08 -2.39 -0.02 0.51 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 1.29 5.79 -2.39 -0.01 1.28 16 38 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.05 1.32 6.25 -2.39 -0.01 1.31 16 41 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.15 1.52 7.72 -2.39 -0.02 1.50 16 44 H 0.16 1.26 7.72 -2.39 -0.02 1.24 16 45 H 0.08 3.52 7.83 -2.39 -0.02 3.51 16 46 H 0.08 3.46 7.84 -2.38 -0.02 3.44 16 47 H 0.01 0.72 7.20 -2.39 -0.02 0.70 16 48 H 0.01 0.74 7.57 -2.39 -0.02 0.73 16 49 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 50 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.08 1.15 8.13 -2.39 -0.02 1.13 16 Total: -1.00 -83.51 399.31 1.77 -81.74 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 0.85 Total: 8.66 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 6.11 Total: 6.06 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -5.38 Total: -96.65 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -1.69 Total: -48.36 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.88 Total: 48.55 kcal Total: -83.51 1.77 -81.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273474322.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.151 kcal (2) G-P(sol) polarization free energy of solvation -83.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds