Wall clock time and date at job start Tue Mar 31 2020 20:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45199 * 109.47221 * 2 1 4 4 C 1.34222 * 117.00133 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99919 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00122 * 180.02562 * 4 3 2 7 7 H 1.08999 * 110.87533 * 36.14990 * 6 4 3 8 8 C 1.54772 * 110.84229 * 160.22089 * 6 4 3 9 9 N 1.46817 * 105.40523 * 143.31310 * 8 6 4 10 10 C 1.46502 * 124.36242 * 162.95177 * 9 8 6 11 11 C 1.53002 * 109.47004 * 269.72506 * 10 9 8 12 12 C 1.50695 * 109.47376 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99517 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00178 * 180.27828 * 12 11 10 15 15 N 1.31514 * 120.00054 * 359.71581 * 14 12 11 16 16 Si 1.86804 * 119.99843 * 179.72201 * 14 12 11 17 17 H 1.48500 * 109.47305 * 359.97438 * 16 14 12 18 18 H 1.48508 * 109.47037 * 119.99711 * 16 14 12 19 19 H 1.48496 * 109.47036 * 239.99440 * 16 14 12 20 20 C 1.34571 * 111.27536 * 342.68348 * 9 8 6 21 21 O 1.21281 * 125.02979 * 180.94065 * 20 9 8 22 22 C 1.50783 * 109.94419 * 0.96836 * 20 9 8 23 23 C 1.52544 * 110.65693 * 257.20576 * 22 20 9 24 24 C 1.53143 * 109.31837 * 293.37479 * 23 22 20 25 25 N 1.46848 * 109.46588 * 301.73725 * 24 23 22 26 26 C 1.46894 * 111.00384 * 186.34253 * 25 24 23 27 27 C 1.46864 * 111.29607 * 62.16971 * 25 24 23 28 28 C 1.52539 * 110.65834 * 134.38414 * 22 20 9 29 29 H 1.09003 * 109.47557 * 300.00284 * 1 2 3 30 30 H 1.09002 * 109.46893 * 60.00272 * 1 2 3 31 31 H 1.09001 * 109.47477 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47238 * 239.99376 * 2 1 3 33 33 H 1.09002 * 109.46893 * 119.99728 * 2 1 3 34 34 H 1.08998 * 110.39506 * 24.27939 * 8 6 4 35 35 H 1.09002 * 110.17516 * 262.23195 * 8 6 4 36 36 H 1.08999 * 109.46979 * 149.72856 * 10 9 8 37 37 H 1.09003 * 109.47110 * 29.72189 * 10 9 8 38 38 H 1.08995 * 109.47336 * 59.99694 * 11 10 9 39 39 H 1.09003 * 109.46929 * 299.99794 * 11 10 9 40 40 H 0.96997 * 120.00138 * 180.02562 * 15 14 12 41 41 H 1.08999 * 109.49510 * 53.32962 * 23 22 20 42 42 H 1.08999 * 109.49156 * 173.42109 * 23 22 20 43 43 H 1.09007 * 109.46892 * 181.74406 * 24 23 22 44 44 H 1.09004 * 109.47621 * 61.74195 * 24 23 22 45 45 H 1.08998 * 109.47521 * 295.66169 * 26 25 24 46 46 H 1.08995 * 109.47248 * 55.66238 * 26 25 24 47 47 H 1.09004 * 109.47142 * 175.66318 * 26 25 24 48 48 H 1.09001 * 109.47003 * 177.82932 * 27 25 24 49 49 H 1.09004 * 109.46847 * 57.82622 * 27 25 24 50 50 H 1.08997 * 109.49775 * 186.57466 * 28 22 20 51 51 H 1.09000 * 109.49905 * 306.63788 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0012 7 1 3.3090 3.6105 0.6019 8 6 5.3887 2.9258 0.4912 9 7 6.0777 3.9393 -0.3174 10 6 7.3750 4.5280 0.0245 11 6 7.1581 5.7803 0.8764 12 6 8.4925 6.3862 1.2275 13 1 9.4041 5.9240 0.8784 14 6 8.5498 7.5270 1.9997 15 7 7.4398 8.0895 2.4252 16 14 10.2042 8.2736 2.4415 17 1 11.2912 7.4566 1.8448 18 1 10.2788 9.6595 1.9130 19 1 10.3576 8.2982 3.9183 20 6 5.3668 4.2536 -1.4159 21 8 5.7110 5.0496 -2.2637 22 6 4.0787 3.4701 -1.4365 23 6 4.1722 2.3066 -2.4187 24 6 4.2805 2.8548 -3.8446 25 7 3.1122 3.6955 -4.1357 26 6 3.1045 4.1173 -5.5427 27 6 3.0534 4.8563 -3.2379 28 6 2.9037 4.3756 -1.7916 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.8359 1.9453 0.3280 35 1 5.4346 3.1910 1.5474 36 1 7.9038 4.7976 -0.8897 37 1 7.9657 3.8043 0.5862 38 1 6.6292 5.5108 1.7905 39 1 6.5674 6.5040 0.3147 40 1 7.4801 8.8923 2.9682 41 1 5.0544 1.7083 -2.1910 42 1 3.2798 1.6866 -2.3341 43 1 4.3162 2.0253 -4.5510 44 1 5.1888 3.4502 -3.9371 45 1 3.9686 4.7529 -5.7363 46 1 3.1486 3.2384 -6.1857 47 1 2.1904 4.6738 -5.7502 48 1 2.1992 5.4788 -3.5043 49 1 3.9707 5.4373 -3.3347 50 1 1.9718 3.8200 -1.6875 51 1 2.8914 5.2353 -1.1215 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273517533.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:14 Heat of formation + Delta-G solvation = -120.550378 kcal Electronic energy + Delta-G solvation = -31692.451194 eV Core-core repulsion = 27591.572957 eV Total energy + Delta-G solvation = -4100.878237 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.77235 -40.09193 -37.90714 -36.99992 -35.98636 -34.57777 -32.96345 -31.98479 -31.00345 -30.85027 -29.13478 -26.86622 -25.47202 -24.60190 -23.61075 -23.34238 -22.52921 -21.48769 -20.57989 -20.12371 -18.56047 -17.77247 -16.97334 -16.67031 -16.59186 -15.92339 -15.72664 -15.23724 -14.96508 -14.69245 -14.62194 -14.39580 -14.33706 -13.75374 -13.61919 -13.37427 -13.30984 -12.94455 -12.68519 -12.58089 -12.50283 -12.29187 -12.24841 -12.18008 -11.88460 -11.81481 -11.79569 -11.49326 -11.34737 -11.17681 -10.98326 -10.82223 -10.75369 -10.69129 -10.48486 -10.32118 -10.02678 -9.91236 -9.38120 -9.13390 -8.40525 -8.20088 -8.10219 -6.05396 -4.08821 1.98046 2.37432 2.90086 3.28981 3.35612 3.38924 3.44542 3.93554 4.15558 4.16289 4.43137 4.43721 4.66103 4.67593 4.72549 4.73845 4.97273 4.99504 5.01772 5.16407 5.28060 5.31129 5.38056 5.41407 5.44807 5.49933 5.51925 5.61000 5.64879 5.68318 5.71421 5.77548 5.81109 5.84033 5.92713 5.97362 6.01758 6.03453 6.22811 6.30084 6.42316 6.74992 6.87511 7.04762 7.07496 7.41465 7.56762 7.62436 7.78254 7.93712 8.29665 8.55814 8.97754 9.55565 11.05996 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012133 B = 0.003384 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.159696 B = 8271.898674 C = 9726.463003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.351 6.351 4 C 0.486 3.514 5 O -0.502 6.502 6 C -0.096 4.096 7 H 0.126 0.874 8 C 0.113 3.887 9 N -0.607 5.607 10 C 0.128 3.872 11 C 0.012 3.988 12 C -0.522 4.522 13 H 0.058 0.942 14 C 0.059 3.941 15 N -0.892 5.892 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.527 3.473 21 O -0.519 6.519 22 C -0.077 4.077 23 C -0.098 4.098 24 C 0.053 3.947 25 N -0.542 5.542 26 C 0.027 3.973 27 C 0.042 3.958 28 C -0.094 4.094 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.018 0.982 39 H 0.021 0.979 40 H 0.261 0.739 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.050 0.950 45 H 0.027 0.973 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.073 0.927 49 H 0.069 0.931 50 H 0.082 0.918 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.233 -15.666 -8.295 23.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.268 6.268 4 C 0.328 3.672 5 O -0.390 6.390 6 C -0.116 4.116 7 H 0.144 0.856 8 C -0.010 4.010 9 N -0.339 5.339 10 C 0.008 3.992 11 C -0.026 4.026 12 C -0.561 4.561 13 H 0.076 0.924 14 C -0.142 4.142 15 N -0.531 5.531 16 Si 0.722 3.278 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.210 1.210 20 C 0.313 3.687 21 O -0.395 6.395 22 C -0.081 4.081 23 C -0.136 4.136 24 C -0.075 4.075 25 N -0.266 5.266 26 C -0.122 4.122 27 C -0.085 4.085 28 C -0.132 4.132 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.036 0.964 39 H 0.040 0.960 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.046 0.954 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.091 0.909 49 H 0.087 0.913 50 H 0.101 0.899 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.227 -15.662 -8.527 23.449 hybrid contribution 1.538 0.778 0.415 1.773 sum -13.688 -14.884 -8.112 21.788 Atomic orbital electron populations 1.21807 0.92549 1.02914 1.03720 1.23044 0.95450 0.80115 1.02630 1.86528 1.24110 1.32412 1.83776 1.22957 0.80746 0.91693 0.71769 1.90669 1.60327 1.42684 1.45299 1.22085 0.98155 0.92129 0.99248 0.85558 1.22062 0.88287 0.93650 0.97035 1.48577 1.21954 1.40508 1.22885 1.21864 0.80191 0.96723 1.00381 1.19414 0.97652 0.91120 0.94414 1.21109 0.92349 1.10310 1.32318 0.92410 1.24993 0.96557 0.96845 0.95840 1.69976 1.26560 1.20581 1.35971 0.86501 0.84036 0.79177 0.78083 1.19656 1.20942 1.20975 1.20168 0.85065 0.81823 0.81612 1.90650 1.73274 1.35160 1.40419 1.21031 0.96777 0.97289 0.92966 1.21530 1.02884 0.95442 0.93783 1.22091 0.92596 0.97012 0.95801 1.61974 1.40786 1.20176 1.03685 1.22302 1.00851 1.00128 0.88892 1.22295 1.02624 0.92056 0.91563 1.21448 0.96251 0.98734 0.96764 0.91403 0.91291 0.90311 0.91163 0.91171 0.89314 0.89102 0.90887 0.91382 0.96385 0.96033 0.92964 0.90556 0.90550 0.90806 0.93180 0.95446 0.91755 0.91507 0.90851 0.91335 0.89930 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.29 37.16 0.38 -0.54 16 2 C 0.06 0.51 6.19 37.16 0.23 0.74 16 3 O -0.35 -3.79 10.22 -39.24 -0.40 -4.19 16 4 C 0.49 5.91 5.01 36.01 0.18 6.09 16 5 O -0.50 -6.98 14.96 -18.75 -0.28 -7.26 16 6 C -0.10 -1.22 3.10 -90.25 -0.28 -1.50 16 7 H 0.13 1.42 7.89 -51.93 -0.41 1.01 16 8 C 0.11 1.63 6.84 -2.94 -0.02 1.61 16 9 N -0.61 -10.90 2.94 -172.35 -0.51 -11.40 16 10 C 0.13 2.67 5.88 -4.04 -0.02 2.64 16 11 C 0.01 0.31 5.30 -27.88 -0.15 0.16 16 12 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 13 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 16 Si 0.89 21.58 29.54 -169.99 -5.02 16.55 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.53 9.47 6.32 -11.04 -0.07 9.40 16 21 O -0.52 -10.97 13.84 5.56 0.08 -10.89 16 22 C -0.08 -1.06 0.47 -155.50 -0.07 -1.14 16 23 C -0.10 -1.27 3.86 -26.89 -0.10 -1.37 16 24 C 0.05 0.69 5.25 -3.78 -0.02 0.67 16 25 N -0.54 -6.77 4.90 -242.81 -1.19 -7.96 16 26 C 0.03 0.28 9.59 60.06 0.58 0.86 16 27 C 0.04 0.56 5.24 -3.77 -0.02 0.54 16 28 C -0.09 -1.20 4.77 -26.89 -0.13 -1.33 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 33 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 34 H 0.09 1.24 6.86 -51.93 -0.36 0.89 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.07 1.60 7.93 -51.93 -0.41 1.19 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.08 1.03 7.99 -51.93 -0.41 0.61 16 42 H 0.08 0.94 6.90 -51.93 -0.36 0.58 16 43 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 44 H 0.05 0.77 6.68 -51.93 -0.35 0.43 16 45 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 49 H 0.07 1.13 5.78 -51.93 -0.30 0.83 16 50 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 51 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 399.87 15.07 6.03 6.03 Total: -1.00 -32.84 399.87 -9.38 -42.23 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -8.90 Total: -0.69 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 0.07 Total: 3.51 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: -0.96 Total: -45.28 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.60 Total: -22.34 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.84 -9.38 -42.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273517533.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.324 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds