Wall clock time and date at job start Tue Mar 31 2020 20:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45199 * 109.47221 * 2 1 4 4 C 1.34222 * 117.00133 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99919 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00122 * 180.02562 * 4 3 2 7 7 H 1.08999 * 110.87533 * 36.14990 * 6 4 3 8 8 C 1.54772 * 110.84229 * 160.22089 * 6 4 3 9 9 N 1.46817 * 105.40523 * 143.31310 * 8 6 4 10 10 C 1.46502 * 124.36242 * 162.95177 * 9 8 6 11 11 C 1.53002 * 109.47004 * 269.72506 * 10 9 8 12 12 C 1.50695 * 109.47376 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99517 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00178 * 180.27828 * 12 11 10 15 15 N 1.31514 * 120.00054 * 359.71581 * 14 12 11 16 16 Si 1.86804 * 119.99843 * 179.72201 * 14 12 11 17 17 H 1.48500 * 109.47305 * 359.97438 * 16 14 12 18 18 H 1.48508 * 109.47037 * 119.99711 * 16 14 12 19 19 H 1.48496 * 109.47036 * 239.99440 * 16 14 12 20 20 C 1.34571 * 111.27536 * 342.68348 * 9 8 6 21 21 O 1.21281 * 125.02979 * 180.94065 * 20 9 8 22 22 C 1.50783 * 109.94419 * 0.96836 * 20 9 8 23 23 C 1.52544 * 110.65693 * 257.20576 * 22 20 9 24 24 C 1.53143 * 109.31837 * 293.37479 * 23 22 20 25 25 N 1.46848 * 109.46588 * 301.73725 * 24 23 22 26 26 C 1.46894 * 111.00384 * 186.34253 * 25 24 23 27 27 C 1.46864 * 111.29607 * 62.16971 * 25 24 23 28 28 C 1.52539 * 110.65834 * 134.38414 * 22 20 9 29 29 H 1.09003 * 109.47557 * 300.00284 * 1 2 3 30 30 H 1.09002 * 109.46893 * 60.00272 * 1 2 3 31 31 H 1.09001 * 109.47477 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47238 * 239.99376 * 2 1 3 33 33 H 1.09002 * 109.46893 * 119.99728 * 2 1 3 34 34 H 1.08998 * 110.39506 * 24.27939 * 8 6 4 35 35 H 1.09002 * 110.17516 * 262.23195 * 8 6 4 36 36 H 1.08999 * 109.46979 * 149.72856 * 10 9 8 37 37 H 1.09003 * 109.47110 * 29.72189 * 10 9 8 38 38 H 1.08995 * 109.47336 * 59.99694 * 11 10 9 39 39 H 1.09003 * 109.46929 * 299.99794 * 11 10 9 40 40 H 0.96997 * 120.00138 * 180.02562 * 15 14 12 41 41 H 1.08999 * 109.49510 * 53.32962 * 23 22 20 42 42 H 1.08999 * 109.49156 * 173.42109 * 23 22 20 43 43 H 1.09007 * 109.46892 * 181.74406 * 24 23 22 44 44 H 1.09004 * 109.47621 * 61.74195 * 24 23 22 45 45 H 1.08998 * 109.47521 * 295.66169 * 26 25 24 46 46 H 1.08995 * 109.47248 * 55.66238 * 26 25 24 47 47 H 1.09004 * 109.47142 * 175.66318 * 26 25 24 48 48 H 1.09001 * 109.47003 * 177.82932 * 27 25 24 49 49 H 1.09004 * 109.46847 * 57.82622 * 27 25 24 50 50 H 1.08997 * 109.49775 * 186.57466 * 28 22 20 51 51 H 1.09000 * 109.49905 * 306.63788 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0012 7 1 3.3090 3.6105 0.6019 8 6 5.3887 2.9258 0.4912 9 7 6.0777 3.9393 -0.3174 10 6 7.3750 4.5280 0.0245 11 6 7.1581 5.7803 0.8764 12 6 8.4925 6.3862 1.2275 13 1 9.4041 5.9240 0.8784 14 6 8.5498 7.5270 1.9997 15 7 7.4398 8.0895 2.4252 16 14 10.2042 8.2736 2.4415 17 1 11.2912 7.4566 1.8448 18 1 10.2788 9.6595 1.9130 19 1 10.3576 8.2982 3.9183 20 6 5.3668 4.2536 -1.4159 21 8 5.7110 5.0496 -2.2637 22 6 4.0787 3.4701 -1.4365 23 6 4.1722 2.3066 -2.4187 24 6 4.2805 2.8548 -3.8446 25 7 3.1122 3.6955 -4.1357 26 6 3.1045 4.1173 -5.5427 27 6 3.0534 4.8563 -3.2379 28 6 2.9037 4.3756 -1.7916 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.8359 1.9453 0.3280 35 1 5.4346 3.1910 1.5474 36 1 7.9038 4.7976 -0.8897 37 1 7.9657 3.8043 0.5862 38 1 6.6292 5.5108 1.7905 39 1 6.5674 6.5040 0.3147 40 1 7.4801 8.8923 2.9682 41 1 5.0544 1.7083 -2.1910 42 1 3.2798 1.6866 -2.3341 43 1 4.3162 2.0253 -4.5510 44 1 5.1888 3.4502 -3.9371 45 1 3.9686 4.7529 -5.7363 46 1 3.1486 3.2384 -6.1857 47 1 2.1904 4.6738 -5.7502 48 1 2.1992 5.4788 -3.5043 49 1 3.9707 5.4373 -3.3347 50 1 1.9718 3.8200 -1.6875 51 1 2.8914 5.2353 -1.1215 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273517533.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:13 Heat of formation + Delta-G solvation = -141.012624 kcal Electronic energy + Delta-G solvation = -31693.338504 eV Core-core repulsion = 27591.572957 eV Total energy + Delta-G solvation = -4101.765546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.93195 -41.13670 -39.06885 -38.05599 -37.29716 -36.10567 -34.79147 -32.61608 -32.38906 -32.05211 -30.61906 -27.99079 -27.20228 -25.67310 -24.76462 -24.41427 -23.60043 -22.88095 -21.78894 -21.34526 -19.83829 -18.77378 -18.72924 -17.84557 -17.62399 -17.29774 -16.95988 -16.60947 -16.30557 -16.12819 -15.77039 -15.62178 -15.38916 -14.89674 -14.80025 -14.55270 -14.46785 -14.27971 -14.18594 -13.70446 -13.58429 -13.48104 -13.36930 -13.29599 -13.06093 -12.91131 -12.86929 -12.76597 -12.59431 -12.49919 -12.38535 -12.25645 -11.97536 -11.90814 -11.77402 -11.54347 -11.46012 -11.41248 -11.33551 -10.65785 -10.59113 -9.66469 -9.28118 -8.24364 -6.36493 1.00002 1.38589 1.39581 1.47175 1.48508 1.53179 2.01982 2.40125 2.91383 3.01545 3.07710 3.09563 3.43471 3.59515 3.70546 3.89488 4.01355 4.09962 4.10871 4.14728 4.23026 4.32612 4.36405 4.43212 4.46734 4.48734 4.52867 4.56134 4.61394 4.66586 4.73363 4.80476 4.85291 4.87988 4.88761 4.97094 4.97494 4.99988 5.01035 5.17303 5.21257 5.26524 5.43536 5.46244 5.54802 5.79436 6.03207 6.07024 6.12454 6.17249 6.64937 6.78336 7.10469 7.33146 8.87812 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012133 B = 0.003384 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.159696 B = 8271.898674 C = 9726.463003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.351 6.351 4 C 0.496 3.504 5 O -0.519 6.519 6 C -0.090 4.090 7 H 0.142 0.858 8 C 0.111 3.889 9 N -0.615 5.615 10 C 0.143 3.857 11 C 0.025 3.975 12 C -0.544 4.544 13 H 0.065 0.935 14 C 0.003 3.997 15 N -0.930 5.930 16 Si 0.967 3.033 17 H -0.261 1.261 18 H -0.281 1.281 19 H -0.274 1.274 20 C 0.517 3.483 21 O -0.558 6.558 22 C -0.067 4.067 23 C -0.091 4.091 24 C 0.054 3.946 25 N -0.536 5.536 26 C 0.025 3.975 27 C 0.043 3.957 28 C -0.092 4.092 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.004 0.996 39 H -0.022 1.022 40 H 0.264 0.736 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.018 0.982 45 H 0.011 0.989 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.091 0.909 49 H 0.031 0.969 50 H 0.107 0.893 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.324 -17.407 -8.198 25.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.267 6.267 4 C 0.339 3.661 5 O -0.408 6.408 6 C -0.110 4.110 7 H 0.160 0.840 8 C -0.012 4.012 9 N -0.346 5.346 10 C 0.022 3.978 11 C -0.013 4.013 12 C -0.583 4.583 13 H 0.083 0.917 14 C -0.196 4.196 15 N -0.570 5.570 16 Si 0.792 3.208 17 H -0.184 1.184 18 H -0.207 1.207 19 H -0.199 1.199 20 C 0.305 3.695 21 O -0.437 6.437 22 C -0.071 4.071 23 C -0.129 4.129 24 C -0.074 4.074 25 N -0.261 5.261 26 C -0.123 4.123 27 C -0.085 4.085 28 C -0.129 4.129 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.022 0.978 39 H -0.003 1.003 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.036 0.964 45 H 0.030 0.970 46 H 0.100 0.900 47 H 0.101 0.899 48 H 0.109 0.891 49 H 0.050 0.950 50 H 0.125 0.875 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.347 -17.437 -8.428 25.344 hybrid contribution 1.822 1.308 0.357 2.271 sum -14.525 -16.129 -8.071 23.157 Atomic orbital electron populations 1.21829 0.90593 1.04297 1.03743 1.23350 0.96951 0.78792 1.02902 1.86520 1.22867 1.34084 1.83245 1.22629 0.81237 0.90841 0.71406 1.90670 1.60887 1.43056 1.46210 1.22036 0.97314 0.93252 0.98358 0.84006 1.22217 0.89296 0.92810 0.96827 1.48613 1.21336 1.41023 1.23647 1.21425 0.82025 0.95433 0.98930 1.19206 0.96124 0.92174 0.93816 1.21552 0.93379 1.10908 1.32413 0.91693 1.25961 1.00635 0.97326 0.95636 1.70104 1.29047 1.21149 1.36665 0.85365 0.79234 0.78093 0.78147 1.18434 1.20725 1.19936 1.20953 0.86277 0.81450 0.80847 1.90630 1.74418 1.36888 1.41750 1.20958 0.94606 0.97272 0.94243 1.21489 1.03216 0.94858 0.93309 1.22093 0.91532 0.97264 0.96525 1.62061 1.39978 1.19548 1.04490 1.22401 1.00937 1.00899 0.88053 1.22255 1.01518 0.92353 0.92373 1.21481 0.96606 0.98595 0.96266 0.91352 0.91259 0.88255 0.90914 0.90975 0.88496 0.88539 0.92434 0.89221 0.97802 1.00334 0.92680 0.91197 0.89040 0.88727 0.96351 0.97020 0.89957 0.89942 0.89090 0.95034 0.87468 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.29 71.98 0.74 -0.60 16 2 C 0.05 0.76 6.19 71.98 0.45 1.20 16 3 O -0.35 -6.65 10.22 -51.34 -0.52 -7.17 16 4 C 0.50 11.05 5.01 71.24 0.36 11.41 16 5 O -0.52 -13.46 14.96 21.95 0.33 -13.13 16 6 C -0.09 -2.17 3.10 -10.55 -0.03 -2.20 16 7 H 0.14 2.98 7.89 -2.39 -0.02 2.96 16 8 C 0.11 3.14 6.84 86.92 0.59 3.74 16 9 N -0.61 -22.63 2.94 -817.70 -2.40 -25.03 16 10 C 0.14 6.14 5.88 86.38 0.51 6.65 16 11 C 0.02 1.33 5.30 29.85 0.16 1.49 16 12 C -0.54 -31.09 9.11 25.60 0.23 -30.86 16 13 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 14 C 0.00 0.16 5.46 84.65 0.46 0.62 16 15 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 16 Si 0.97 44.45 29.54 68.60 2.03 46.48 16 17 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 C 0.52 19.24 6.32 87.72 0.55 19.79 16 21 O -0.56 -25.07 13.84 -3.03 -0.04 -25.12 16 22 C -0.07 -1.83 0.47 -52.82 -0.02 -1.85 16 23 C -0.09 -2.24 3.86 30.49 0.12 -2.12 16 24 C 0.05 1.37 5.25 86.36 0.45 1.82 16 25 N -0.54 -12.78 4.90 -922.11 -4.51 -17.30 16 26 C 0.03 0.50 9.59 127.69 1.22 1.72 16 27 C 0.04 1.14 5.24 86.36 0.45 1.59 16 28 C -0.09 -2.27 4.77 30.49 0.15 -2.12 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 33 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 34 H 0.10 2.62 6.86 -2.39 -0.02 2.60 16 35 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.06 2.63 7.93 -2.39 -0.02 2.61 16 37 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 38 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 39 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 40 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.07 1.82 7.99 -2.39 -0.02 1.81 16 42 H 0.09 2.02 6.90 -2.39 -0.02 2.00 16 43 H 0.09 1.98 8.08 -2.38 -0.02 1.96 16 44 H 0.02 0.59 6.68 -2.39 -0.02 0.57 16 45 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 46 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 47 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.09 2.05 8.12 -2.39 -0.02 2.03 16 49 H 0.03 1.09 5.78 -2.38 -0.01 1.08 16 50 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -73.15 399.87 2.44 -70.71 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.90 Total: 16.78 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 6.39 Total: 10.28 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -6.63 Total: -98.83 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -0.24 Total: -45.42 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -73.15 2.44 -70.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273517533.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.303 kcal (2) G-P(sol) polarization free energy of solvation -73.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds