Wall clock time and date at job start Tue Mar 31 2020 20:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45200 * 109.47434 * 2 1 4 4 C 1.34228 * 117.00705 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99710 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00377 * 179.97438 * 4 3 2 7 7 H 1.08997 * 110.90541 * 327.82936 * 6 4 3 8 8 C 1.54589 * 110.99561 * 203.95543 * 6 4 3 9 9 N 1.46818 * 105.49834 * 216.93563 * 8 6 4 10 10 C 1.46507 * 124.35706 * 196.88526 * 9 8 6 11 11 C 1.52997 * 109.46719 * 270.00820 * 10 9 8 12 12 C 1.50698 * 109.47200 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99493 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00224 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00252 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99970 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47005 * 90.00597 * 16 14 12 18 18 H 1.48503 * 109.46895 * 210.00279 * 16 14 12 19 19 H 1.48496 * 109.47096 * 330.00266 * 16 14 12 20 20 C 1.34561 * 111.27996 * 16.91351 * 9 8 6 21 21 O 1.21278 * 125.03143 * 179.04189 * 20 9 8 22 22 C 1.50776 * 109.94142 * 359.30614 * 20 9 8 23 23 C 1.52539 * 110.66496 * 225.61207 * 22 20 9 24 24 C 1.53140 * 109.31631 * 293.37792 * 23 22 20 25 25 N 1.46852 * 109.46099 * 301.71906 * 24 23 22 26 26 C 1.46898 * 111.00152 * 186.34361 * 25 24 23 27 27 C 1.46855 * 111.28894 * 62.18132 * 25 24 23 28 28 C 1.52545 * 110.66512 * 102.78960 * 22 20 9 29 29 H 1.08999 * 109.46809 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46758 * 299.99902 * 1 2 3 31 31 H 1.08995 * 109.46749 * 60.00734 * 1 2 3 32 32 H 1.08997 * 109.47459 * 239.99840 * 2 1 3 33 33 H 1.09001 * 109.47585 * 119.99470 * 2 1 3 34 34 H 1.08997 * 110.23822 * 97.92118 * 8 6 4 35 35 H 1.09007 * 110.31251 * 335.97582 * 8 6 4 36 36 H 1.08995 * 109.47000 * 30.00612 * 10 9 8 37 37 H 1.08995 * 109.46660 * 150.01165 * 10 9 8 38 38 H 1.09006 * 109.47273 * 300.00394 * 11 10 9 39 39 H 1.09003 * 109.47399 * 59.99861 * 11 10 9 40 40 H 0.96991 * 120.00303 * 179.97438 * 15 14 12 41 41 H 1.09003 * 109.49986 * 53.32867 * 23 22 20 42 42 H 1.09002 * 109.50300 * 173.42574 * 23 22 20 43 43 H 1.09009 * 109.47691 * 181.72248 * 24 23 22 44 44 H 1.09008 * 109.47337 * 61.71681 * 24 23 22 45 45 H 1.08999 * 109.47218 * 295.67234 * 26 25 24 46 46 H 1.08999 * 109.46988 * 55.67096 * 26 25 24 47 47 H 1.09008 * 109.47287 * 175.67236 * 26 25 24 48 48 H 1.09006 * 109.47566 * 177.82583 * 27 25 24 49 49 H 1.09007 * 109.47506 * 57.81857 * 27 25 24 50 50 H 1.08999 * 109.49340 * 186.57473 * 28 22 20 51 51 H 1.08997 * 109.49367 * 306.64130 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.2727 3.6261 -0.5433 8 6 5.3510 2.9449 -0.5877 9 7 6.0947 3.9323 0.2045 10 6 7.3681 4.5305 -0.2041 11 6 8.5240 3.6722 0.3136 12 6 9.8340 4.2877 -0.1062 13 1 9.8412 5.2000 -0.6840 14 6 11.0231 3.6866 0.2484 15 7 11.0142 2.5758 0.9525 16 14 12.6468 4.4500 -0.2713 17 1 13.1034 5.4015 0.7735 18 1 13.6630 3.3812 -0.4455 19 1 12.4650 5.1741 -1.5550 20 6 5.4563 4.2167 1.3544 21 8 5.8575 4.9865 2.2014 22 6 4.1716 3.4318 1.4371 23 6 3.0225 4.3264 1.8910 24 6 3.2654 4.7684 3.3370 25 7 3.3807 3.5842 4.1978 26 6 3.4639 3.9683 5.6132 27 6 4.5273 2.7526 3.8099 28 6 4.3270 2.2426 2.3798 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 5.3271 3.2429 -1.6358 35 1 5.8067 1.9599 -0.4865 36 1 7.4128 4.5821 -1.2919 37 1 7.4473 5.5352 0.2110 38 1 8.4793 3.6204 1.4015 39 1 8.4448 2.6673 -0.1014 40 1 11.8507 2.1528 1.2016 41 1 2.9681 5.2039 1.2467 42 1 2.0853 3.7728 1.8325 43 1 2.4306 5.3829 3.6743 44 1 4.1875 5.3473 3.3900 45 1 4.3797 4.5346 5.7828 46 1 2.6028 4.5835 5.8740 47 1 3.4711 3.0718 6.2332 48 1 4.6079 1.9047 4.4901 49 1 5.4401 3.3464 3.8594 50 1 3.4304 1.6244 2.3363 51 1 5.1918 1.6511 2.0796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273517634.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:18 Heat of formation + Delta-G solvation = -119.847273 kcal Electronic energy + Delta-G solvation = -31776.535159 eV Core-core repulsion = 27675.687411 eV Total energy + Delta-G solvation = -4100.847748 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.76303 -40.06829 -37.87588 -36.98290 -35.97496 -34.55898 -32.94220 -31.98072 -30.96476 -30.85134 -29.11286 -26.85379 -25.45889 -24.58862 -23.55403 -23.33562 -22.51819 -21.46788 -20.59966 -20.09265 -18.50712 -17.83275 -16.99261 -16.69390 -16.30468 -15.98089 -15.72658 -15.20749 -14.94548 -14.67390 -14.60920 -14.43055 -14.31494 -13.67652 -13.63089 -13.41476 -13.26521 -12.91840 -12.68783 -12.53294 -12.46866 -12.32524 -12.20674 -12.16654 -11.88012 -11.80768 -11.75882 -11.47645 -11.31186 -11.13501 -10.95574 -10.78736 -10.72096 -10.70763 -10.46212 -10.29460 -10.02165 -9.89082 -9.37303 -9.11907 -8.37884 -8.16186 -8.10101 -6.02501 -4.06489 2.01161 2.38106 2.90473 3.31434 3.36093 3.38767 3.44235 3.97303 4.15796 4.17407 4.42847 4.44718 4.67690 4.69549 4.73052 4.76487 4.95995 5.01538 5.02927 5.15812 5.33208 5.33638 5.39418 5.43343 5.49988 5.50441 5.53021 5.56617 5.65401 5.68470 5.72585 5.85290 5.86208 5.88212 5.95552 5.99321 6.03660 6.10910 6.24207 6.30544 6.40825 6.76606 6.88195 7.08818 7.11635 7.43120 7.60680 7.64748 7.80349 7.96394 8.31589 8.55998 9.00047 9.57640 11.08789 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011827 B = 0.003499 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.957150 B = 7999.920117 C = 9373.402055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.354 6.354 4 C 0.482 3.518 5 O -0.495 6.495 6 C -0.095 4.095 7 H 0.122 0.878 8 C 0.113 3.887 9 N -0.607 5.607 10 C 0.129 3.871 11 C 0.011 3.989 12 C -0.523 4.523 13 H 0.057 0.943 14 C 0.059 3.941 15 N -0.891 5.891 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.527 3.473 21 O -0.518 6.518 22 C -0.077 4.077 23 C -0.092 4.092 24 C 0.042 3.958 25 N -0.542 5.542 26 C 0.026 3.974 27 C 0.052 3.948 28 C -0.099 4.099 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.021 0.979 39 H 0.018 0.982 40 H 0.261 0.739 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.027 0.973 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.075 0.925 49 H 0.053 0.947 50 H 0.075 0.925 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.856 -2.135 0.065 23.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.271 6.271 4 C 0.324 3.676 5 O -0.381 6.381 6 C -0.115 4.115 7 H 0.140 0.860 8 C -0.011 4.011 9 N -0.339 5.339 10 C 0.009 3.991 11 C -0.027 4.027 12 C -0.562 4.562 13 H 0.075 0.925 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C 0.313 3.687 21 O -0.394 6.394 22 C -0.081 4.081 23 C -0.130 4.130 24 C -0.086 4.086 25 N -0.266 5.266 26 C -0.122 4.122 27 C -0.076 4.076 28 C -0.137 4.137 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.039 0.961 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.046 0.954 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.071 0.929 50 H 0.093 0.907 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.648 -2.416 0.484 23.776 hybrid contribution 1.736 0.464 -0.260 1.816 sum -21.912 -1.953 0.224 22.000 Atomic orbital electron populations 1.21801 0.92597 1.02936 1.03577 1.23049 0.95356 0.80112 1.02775 1.86503 1.24169 1.32464 1.83965 1.22927 0.80743 0.91745 0.72215 1.90716 1.60221 1.42573 1.44596 1.22018 0.98167 0.92331 0.98962 0.85964 1.22038 0.87887 0.95349 0.95825 1.48569 1.23188 1.42042 1.20112 1.21867 0.80458 0.97681 0.99065 1.19411 0.91045 0.95015 0.97179 1.21063 0.90669 1.09719 1.34747 0.92474 1.25002 0.99308 0.94906 0.95030 1.69974 1.26941 1.18302 1.37761 0.86556 0.83347 0.78873 0.78995 1.20605 1.21191 1.19800 1.20156 0.85050 0.81722 0.81747 1.90652 1.70528 1.36981 1.41288 1.21043 0.96488 0.97540 0.93016 1.21434 0.96585 0.98577 0.96398 1.22283 1.02315 0.92026 0.91958 1.61987 1.41919 1.19678 1.03046 1.22304 1.00494 1.00557 0.88832 1.22111 0.92665 0.97330 0.95506 1.21537 1.03089 0.95153 0.93898 0.90292 0.91329 0.91514 0.91146 0.91064 0.89558 0.88873 0.91392 0.90876 0.96105 0.96316 0.92908 0.90923 0.89994 0.91013 0.91456 0.95394 0.91637 0.91638 0.90627 0.92870 0.90687 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.29 37.16 0.38 -0.52 16 2 C 0.06 0.53 6.19 37.16 0.23 0.76 16 3 O -0.35 -3.78 10.22 -39.25 -0.40 -4.18 16 4 C 0.48 5.98 5.09 36.00 0.18 6.17 16 5 O -0.49 -7.46 14.76 -18.75 -0.28 -7.73 16 6 C -0.10 -1.14 3.08 -90.34 -0.28 -1.42 16 7 H 0.12 1.13 7.89 -51.93 -0.41 0.72 16 8 C 0.11 1.62 6.86 -3.03 -0.02 1.60 16 9 N -0.61 -10.89 2.94 -172.48 -0.51 -11.40 16 10 C 0.13 2.68 5.87 -4.04 -0.02 2.66 16 11 C 0.01 0.30 5.30 -27.89 -0.15 0.15 16 12 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 16 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 20 C 0.53 9.48 6.33 -11.05 -0.07 9.41 16 21 O -0.52 -10.98 13.85 5.56 0.08 -10.91 16 22 C -0.08 -1.07 0.47 -155.50 -0.07 -1.14 16 23 C -0.09 -1.09 4.77 -26.90 -0.13 -1.22 16 24 C 0.04 0.54 5.24 -3.78 -0.02 0.52 16 25 N -0.54 -7.09 4.90 -242.80 -1.19 -8.28 16 26 C 0.03 0.30 9.59 60.06 0.58 0.87 16 27 C 0.05 0.76 5.25 -3.78 -0.02 0.74 16 28 C -0.10 -1.42 3.79 -26.89 -0.10 -1.53 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 33 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 1.51 6.89 -51.93 -0.36 1.15 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.07 1.58 7.94 -51.93 -0.41 1.17 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.79 8.08 -51.92 -0.42 0.37 16 44 H 0.07 1.07 5.79 -51.92 -0.30 0.77 16 45 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 47 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 48 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 49 H 0.05 0.94 6.67 -51.93 -0.35 0.60 16 50 H 0.07 1.01 6.90 -51.93 -0.36 0.65 16 51 H 0.08 1.34 7.86 -51.93 -0.41 0.93 16 LS Contribution 399.59 15.07 6.02 6.02 Total: -1.00 -33.70 399.59 -9.37 -43.07 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -8.89 Total: -0.48 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 0.08 Total: 3.53 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -0.96 Total: -46.10 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.60 Total: -22.82 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.70 -9.37 -43.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273517634.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.776 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds