Wall clock time and date at job start Tue Mar 31 2020 20:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45200 * 109.47434 * 2 1 4 4 C 1.34228 * 117.00705 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99710 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00377 * 179.97438 * 4 3 2 7 7 H 1.08997 * 110.90541 * 327.82936 * 6 4 3 8 8 C 1.54589 * 110.99561 * 203.95543 * 6 4 3 9 9 N 1.46818 * 105.49834 * 216.93563 * 8 6 4 10 10 C 1.46507 * 124.35706 * 196.88526 * 9 8 6 11 11 C 1.52997 * 109.46719 * 270.00820 * 10 9 8 12 12 C 1.50698 * 109.47200 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99493 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00224 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00252 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99970 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47005 * 90.00597 * 16 14 12 18 18 H 1.48503 * 109.46895 * 210.00279 * 16 14 12 19 19 H 1.48496 * 109.47096 * 330.00266 * 16 14 12 20 20 C 1.34561 * 111.27996 * 16.91351 * 9 8 6 21 21 O 1.21278 * 125.03143 * 179.04189 * 20 9 8 22 22 C 1.50776 * 109.94142 * 359.30614 * 20 9 8 23 23 C 1.52539 * 110.66496 * 225.61207 * 22 20 9 24 24 C 1.53140 * 109.31631 * 293.37792 * 23 22 20 25 25 N 1.46852 * 109.46099 * 301.71906 * 24 23 22 26 26 C 1.46898 * 111.00152 * 186.34361 * 25 24 23 27 27 C 1.46855 * 111.28894 * 62.18132 * 25 24 23 28 28 C 1.52545 * 110.66512 * 102.78960 * 22 20 9 29 29 H 1.08999 * 109.46809 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46758 * 299.99902 * 1 2 3 31 31 H 1.08995 * 109.46749 * 60.00734 * 1 2 3 32 32 H 1.08997 * 109.47459 * 239.99840 * 2 1 3 33 33 H 1.09001 * 109.47585 * 119.99470 * 2 1 3 34 34 H 1.08997 * 110.23822 * 97.92118 * 8 6 4 35 35 H 1.09007 * 110.31251 * 335.97582 * 8 6 4 36 36 H 1.08995 * 109.47000 * 30.00612 * 10 9 8 37 37 H 1.08995 * 109.46660 * 150.01165 * 10 9 8 38 38 H 1.09006 * 109.47273 * 300.00394 * 11 10 9 39 39 H 1.09003 * 109.47399 * 59.99861 * 11 10 9 40 40 H 0.96991 * 120.00303 * 179.97438 * 15 14 12 41 41 H 1.09003 * 109.49986 * 53.32867 * 23 22 20 42 42 H 1.09002 * 109.50300 * 173.42574 * 23 22 20 43 43 H 1.09009 * 109.47691 * 181.72248 * 24 23 22 44 44 H 1.09008 * 109.47337 * 61.71681 * 24 23 22 45 45 H 1.08999 * 109.47218 * 295.67234 * 26 25 24 46 46 H 1.08999 * 109.46988 * 55.67096 * 26 25 24 47 47 H 1.09008 * 109.47287 * 175.67236 * 26 25 24 48 48 H 1.09006 * 109.47566 * 177.82583 * 27 25 24 49 49 H 1.09007 * 109.47506 * 57.81857 * 27 25 24 50 50 H 1.08999 * 109.49340 * 186.57473 * 28 22 20 51 51 H 1.08997 * 109.49367 * 306.64130 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.2727 3.6261 -0.5433 8 6 5.3510 2.9449 -0.5877 9 7 6.0947 3.9323 0.2045 10 6 7.3681 4.5305 -0.2041 11 6 8.5240 3.6722 0.3136 12 6 9.8340 4.2877 -0.1062 13 1 9.8412 5.2000 -0.6840 14 6 11.0231 3.6866 0.2484 15 7 11.0142 2.5758 0.9525 16 14 12.6468 4.4500 -0.2713 17 1 13.1034 5.4015 0.7735 18 1 13.6630 3.3812 -0.4455 19 1 12.4650 5.1741 -1.5550 20 6 5.4563 4.2167 1.3544 21 8 5.8575 4.9865 2.2014 22 6 4.1716 3.4318 1.4371 23 6 3.0225 4.3264 1.8910 24 6 3.2654 4.7684 3.3370 25 7 3.3807 3.5842 4.1978 26 6 3.4639 3.9683 5.6132 27 6 4.5273 2.7526 3.8099 28 6 4.3270 2.2426 2.3798 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 5.3271 3.2429 -1.6358 35 1 5.8067 1.9599 -0.4865 36 1 7.4128 4.5821 -1.2919 37 1 7.4473 5.5352 0.2110 38 1 8.4793 3.6204 1.4015 39 1 8.4448 2.6673 -0.1014 40 1 11.8507 2.1528 1.2016 41 1 2.9681 5.2039 1.2467 42 1 2.0853 3.7728 1.8325 43 1 2.4306 5.3829 3.6743 44 1 4.1875 5.3473 3.3900 45 1 4.3797 4.5346 5.7828 46 1 2.6028 4.5835 5.8740 47 1 3.4711 3.0718 6.2332 48 1 4.6079 1.9047 4.4901 49 1 5.4401 3.3464 3.8594 50 1 3.4304 1.6244 2.3363 51 1 5.1918 1.6511 2.0796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273517634.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:17 Heat of formation + Delta-G solvation = -141.850643 kcal Electronic energy + Delta-G solvation = -31777.489296 eV Core-core repulsion = 27675.687411 eV Total energy + Delta-G solvation = -4101.801886 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.93361 -41.13612 -39.07450 -38.05737 -37.30052 -36.12111 -34.80078 -32.63606 -32.40706 -32.05976 -30.61053 -28.00856 -27.21308 -25.68115 -24.73578 -24.45730 -23.62953 -22.89151 -21.81520 -21.32105 -19.80292 -18.94458 -18.62149 -17.84630 -17.59682 -17.23900 -16.97783 -16.58517 -16.40440 -16.11376 -15.79752 -15.64664 -15.42732 -14.84390 -14.82958 -14.54289 -14.46789 -14.38010 -14.12007 -13.72880 -13.57916 -13.50428 -13.38760 -13.29604 -13.04650 -12.92399 -12.87283 -12.76824 -12.57599 -12.51132 -12.38871 -12.26961 -11.99874 -11.87452 -11.81576 -11.53994 -11.46734 -11.44527 -11.33091 -10.66490 -10.60626 -9.66790 -9.30408 -8.25708 -6.39280 1.00839 1.36939 1.39807 1.44382 1.50365 1.51278 2.03152 2.38757 2.90442 3.02670 3.07902 3.09017 3.43479 3.60691 3.71960 3.88618 4.00085 4.08620 4.10656 4.14846 4.23865 4.26968 4.36406 4.42436 4.44714 4.49175 4.52163 4.57853 4.62049 4.66753 4.73392 4.80705 4.84940 4.86665 4.88878 4.96346 4.97314 4.97931 5.01189 5.18896 5.22441 5.26574 5.40729 5.46609 5.53045 5.77517 5.98921 6.07336 6.10481 6.16652 6.66818 6.76701 7.10950 7.30988 8.86623 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011827 B = 0.003499 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.957150 B = 7999.920117 C = 9373.402055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 O -0.346 6.346 4 C 0.488 3.512 5 O -0.526 6.526 6 C -0.082 4.082 7 H 0.165 0.835 8 C 0.107 3.893 9 N -0.614 5.614 10 C 0.144 3.856 11 C 0.023 3.977 12 C -0.543 4.543 13 H 0.071 0.929 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.972 3.028 17 H -0.276 1.276 18 H -0.281 1.281 19 H -0.254 1.254 20 C 0.517 3.483 21 O -0.558 6.558 22 C -0.069 4.069 23 C -0.087 4.087 24 C 0.039 3.961 25 N -0.534 5.534 26 C 0.025 3.975 27 C 0.055 3.945 28 C -0.092 4.092 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.120 0.880 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.063 0.937 38 H -0.029 1.029 39 H -0.006 1.006 40 H 0.264 0.736 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.032 0.968 45 H 0.009 0.991 46 H 0.089 0.911 47 H 0.076 0.924 48 H 0.084 0.916 49 H 0.011 0.989 50 H 0.092 0.908 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.504 -1.324 -1.519 26.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.262 6.262 4 C 0.332 3.668 5 O -0.415 6.415 6 C -0.101 4.101 7 H 0.183 0.817 8 C -0.015 4.015 9 N -0.345 5.345 10 C 0.023 3.977 11 C -0.015 4.015 12 C -0.581 4.581 13 H 0.089 0.911 14 C -0.200 4.200 15 N -0.574 5.574 16 Si 0.795 3.205 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.178 1.178 20 C 0.304 3.696 21 O -0.437 6.437 22 C -0.073 4.073 23 C -0.125 4.125 24 C -0.089 4.089 25 N -0.259 5.259 26 C -0.123 4.123 27 C -0.074 4.074 28 C -0.130 4.130 29 H 0.115 0.885 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.081 0.919 38 H -0.011 1.011 39 H 0.013 0.987 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.126 0.874 43 H 0.117 0.883 44 H 0.050 0.950 45 H 0.027 0.973 46 H 0.107 0.893 47 H 0.095 0.905 48 H 0.102 0.898 49 H 0.029 0.971 50 H 0.110 0.890 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -26.348 -1.608 -1.117 26.421 hybrid contribution 2.543 0.137 0.310 2.565 sum -23.805 -1.471 -0.808 23.864 Atomic orbital electron populations 1.21814 0.90176 1.04272 1.03948 1.23334 0.97181 0.79011 1.02598 1.86499 1.22676 1.33764 1.83306 1.22891 0.81225 0.91302 0.71428 1.90723 1.61135 1.43615 1.46071 1.22028 0.97323 0.93174 0.97577 0.81739 1.22213 0.88785 0.93187 0.97339 1.48608 1.22430 1.42544 1.20965 1.21439 0.80098 0.95889 1.00281 1.19219 0.93539 0.94896 0.93886 1.21547 0.91610 1.10203 1.34777 0.91098 1.26068 1.03810 0.95288 0.94833 1.70135 1.28145 1.20045 1.39103 0.85350 0.77860 0.78001 0.79248 1.20155 1.20685 1.17810 1.20953 0.86377 0.81339 0.80891 1.90632 1.71874 1.38790 1.42389 1.20984 0.95003 0.96957 0.94309 1.21512 0.96163 0.99047 0.95735 1.22347 1.01644 0.91839 0.93051 1.62087 1.40108 1.19662 1.04017 1.22409 1.00621 1.01290 0.88026 1.22028 0.91773 0.97370 0.96206 1.21442 1.02400 0.95316 0.93859 0.88509 0.91142 0.90887 0.91123 0.91633 0.86159 0.91429 0.88515 0.91885 1.01090 0.98739 0.92758 0.89119 0.87447 0.88299 0.94960 0.97256 0.89253 0.90511 0.89788 0.97073 0.88994 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.29 71.98 0.74 -0.55 16 2 C 0.05 0.79 6.19 71.98 0.45 1.23 16 3 O -0.35 -6.41 10.22 -51.40 -0.53 -6.93 16 4 C 0.49 11.30 5.09 71.23 0.36 11.67 16 5 O -0.53 -15.82 14.76 21.95 0.32 -15.49 16 6 C -0.08 -1.79 3.08 -10.62 -0.03 -1.83 16 7 H 0.17 2.28 7.89 -2.39 -0.02 2.26 16 8 C 0.11 3.02 6.86 86.86 0.60 3.61 16 9 N -0.61 -22.52 2.94 -818.10 -2.40 -24.92 16 10 C 0.14 6.15 5.87 86.38 0.51 6.65 16 11 C 0.02 1.26 5.30 29.85 0.16 1.42 16 12 C -0.54 -31.56 9.11 25.60 0.23 -31.32 16 13 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 14 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 15 N -0.93 -59.22 13.29 21.45 0.28 -58.94 16 16 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 19 H -0.25 -10.98 7.11 99.48 0.71 -10.27 16 20 C 0.52 19.19 6.33 87.71 0.56 19.74 16 21 O -0.56 -25.12 13.85 -3.02 -0.04 -25.16 16 22 C -0.07 -1.86 0.47 -52.82 -0.03 -1.88 16 23 C -0.09 -1.83 4.77 30.49 0.15 -1.68 16 24 C 0.04 0.96 5.24 86.36 0.45 1.41 16 25 N -0.53 -13.58 4.90 -922.08 -4.52 -18.10 16 26 C 0.02 0.54 9.59 127.69 1.22 1.76 16 27 C 0.05 1.67 5.25 86.36 0.45 2.12 16 28 C -0.09 -2.71 3.79 30.49 0.12 -2.59 16 29 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 33 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 34 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.07 2.28 6.89 -2.38 -0.02 2.26 16 36 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 37 H 0.06 2.81 7.94 -2.39 -0.02 2.79 16 38 H -0.03 -1.90 8.14 -2.38 -0.02 -1.92 16 39 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 40 H 0.26 15.67 8.31 -92.71 -0.77 14.89 16 41 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.10 1.90 8.08 -2.38 -0.02 1.88 16 44 H 0.03 1.05 5.79 -2.38 -0.01 1.04 16 45 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.09 1.53 8.09 -2.39 -0.02 1.51 16 47 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 48 H 0.08 2.35 8.12 -2.38 -0.02 2.33 16 49 H 0.01 0.43 6.67 -2.38 -0.02 0.41 16 50 H 0.09 2.39 6.90 -2.39 -0.02 2.38 16 51 H 0.05 1.80 7.86 -2.39 -0.02 1.78 16 Total: -1.00 -78.89 399.59 2.44 -76.45 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.90 Total: 15.83 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 6.39 Total: 10.10 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -6.63 Total: -101.96 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -0.24 Total: -47.59 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -78.89 2.44 -76.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273517634.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.404 kcal (2) G-P(sol) polarization free energy of solvation -78.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds