Wall clock time and date at job start Tue Mar 31 2020 21:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00048 * 2 1 4 4 C 1.53005 * 112.84863 * 302.14799 * 3 2 1 5 5 C 1.50702 * 109.46546 * 298.78447 * 4 3 2 6 6 O 1.21273 * 120.00439 * 5.49037 * 5 4 3 7 7 N 1.34782 * 119.99727 * 185.48593 * 5 4 3 8 8 C 1.46500 * 119.99967 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.46992 * 180.02562 * 8 7 5 10 10 H 1.09000 * 110.29096 * 57.87117 * 9 8 7 11 11 C 1.54563 * 110.32040 * 180.02562 * 9 8 7 12 12 C 1.54774 * 104.07375 * 142.48745 * 11 9 8 13 13 C 1.53339 * 103.67751 * 359.13346 * 12 11 9 14 14 C 1.52316 * 116.12899 * 108.91108 * 13 12 11 15 15 N 1.47286 * 87.68579 * 91.18419 * 14 13 12 16 16 C 1.36938 * 135.92801 * 206.13158 * 15 14 13 17 17 H 1.08002 * 120.00060 * 357.84748 * 16 15 14 18 18 C 1.38809 * 119.99716 * 177.85013 * 16 15 14 19 19 N 1.31621 * 119.99777 * 176.60131 * 18 16 15 20 20 Si 1.86797 * 120.00225 * 356.59483 * 18 16 15 21 21 H 1.48504 * 109.47010 * 176.63668 * 20 18 16 22 22 H 1.48495 * 109.47202 * 296.63787 * 20 18 16 23 23 H 1.48500 * 109.47044 * 56.64016 * 20 18 16 24 24 C 1.47281 * 88.14184 * 26.38140 * 15 14 13 25 25 O 1.43108 * 106.44686 * 337.45577 * 13 12 11 26 26 C 1.53780 * 113.61637 * 73.33829 * 3 2 1 27 27 C 1.53952 * 87.01821 * 89.23050 * 26 3 2 28 28 C 1.53778 * 113.61941 * 170.94842 * 3 2 1 29 29 H 1.08996 * 109.46829 * 66.81643 * 1 2 3 30 30 H 1.09000 * 109.47003 * 186.81672 * 1 2 3 31 31 H 1.08993 * 109.47213 * 306.81978 * 1 2 3 32 32 H 1.09001 * 109.47317 * 178.78951 * 4 3 2 33 33 H 1.09001 * 109.47303 * 58.78456 * 4 3 2 34 34 H 0.97001 * 119.99684 * 0.02562 * 7 5 4 35 35 H 1.08997 * 109.47291 * 60.00141 * 8 7 5 36 36 H 1.09001 * 109.46696 * 300.00131 * 8 7 5 37 37 H 1.08993 * 110.51109 * 23.83706 * 11 9 8 38 38 H 1.08997 * 110.61972 * 261.18850 * 11 9 8 39 39 H 1.09000 * 110.57626 * 240.58635 * 12 11 9 40 40 H 1.08996 * 110.71141 * 117.74590 * 12 11 9 41 41 H 1.08999 * 113.51334 * 336.48158 * 14 13 12 42 42 H 1.08996 * 113.58209 * 205.89947 * 14 13 12 43 43 H 0.97005 * 119.99913 * 354.81147 * 19 18 16 44 44 H 1.09000 * 113.51870 * 88.32286 * 24 15 14 45 45 H 1.09002 * 113.51691 * 218.91171 * 24 15 14 46 46 H 1.09003 * 113.61950 * 203.75498 * 26 3 2 47 47 H 1.09001 * 113.61476 * 334.65174 * 26 3 2 48 48 H 1.09001 * 113.53808 * 270.81392 * 27 26 3 49 49 H 1.09003 * 113.74217 * 139.94715 * 27 26 3 50 50 H 1.09004 * 113.61228 * 25.34188 * 28 3 2 51 51 H 1.08997 * 113.61816 * 156.16374 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5665 2.1534 -1.1938 5 6 1.9985 1.4843 -2.4732 6 8 2.5128 0.3866 -2.4398 7 7 1.8132 2.1061 -3.6546 8 6 2.2326 1.4555 -4.8984 9 6 1.9118 2.3675 -6.0843 10 1 2.4079 3.3307 -5.9654 11 6 2.3462 1.6990 -7.4084 12 6 1.2372 2.0964 -8.4122 13 6 0.2664 2.9311 -7.5683 14 6 0.2414 4.4264 -7.8572 15 7 -0.8335 4.1602 -8.8283 16 6 -1.3047 4.7627 -9.9642 17 1 -0.8642 5.6870 -10.3076 18 6 -2.3484 4.1853 -10.6741 19 7 -2.8459 4.7979 -11.7276 20 14 -3.0470 2.5390 -10.1346 21 1 -4.1980 2.1815 -11.0021 22 1 -1.9976 1.4946 -10.2491 23 1 -3.5007 2.6323 -8.7237 24 6 -1.1842 2.9663 -8.0404 25 8 0.4818 2.5487 -6.2062 26 6 1.8918 2.0326 1.3499 27 6 3.2335 1.3794 1.7283 28 6 3.5320 1.3024 0.2217 29 1 -0.3633 0.4046 -0.9447 30 1 -0.3633 -1.0204 0.1220 31 1 -0.3633 0.6158 0.8226 32 1 2.0234 3.1408 -1.1280 33 1 0.4812 2.2538 -1.1848 34 1 1.4022 2.9843 -3.6813 35 1 1.7007 0.5109 -5.0117 36 1 3.3056 1.2666 -4.8657 37 1 2.3874 0.6159 -7.2939 38 1 3.3122 2.0846 -7.7342 39 1 0.7393 1.2094 -8.8039 40 1 1.6493 2.6938 -9.2254 41 1 1.1590 4.7963 -8.3147 42 1 -0.0794 5.0294 -7.0078 43 1 -2.5353 5.6860 -11.9638 44 1 -1.8971 3.1670 -7.2406 45 1 -1.4653 2.1088 -8.6518 46 1 1.9426 3.1183 1.2670 47 1 1.0529 1.6923 1.9569 48 1 3.1244 0.4039 2.2022 49 1 3.9059 2.0419 2.2733 50 1 4.0154 0.3733 -0.0807 51 1 4.0324 2.1873 -0.1715 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273654668.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:05 Heat of formation + Delta-G solvation = -34.934268 kcal Electronic energy + Delta-G solvation = -30192.586236 eV Core-core repulsion = 26095.420592 eV Total energy + Delta-G solvation = -4097.165644 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.76945 -40.31459 -38.94360 -36.97265 -35.84573 -34.57792 -32.37924 -32.11084 -31.03942 -29.18158 -27.32455 -27.05097 -25.85706 -25.66591 -24.21697 -23.01654 -21.54747 -21.32482 -20.41597 -19.71382 -19.17249 -17.53568 -17.34459 -16.82094 -16.42111 -16.37029 -15.82207 -15.52339 -15.36530 -15.25349 -14.94295 -14.61646 -14.48530 -13.98592 -13.79540 -13.60990 -13.34090 -13.15643 -13.01738 -12.72986 -12.58012 -12.25533 -11.99154 -11.93385 -11.67183 -11.55428 -11.54310 -11.30805 -11.24510 -11.12608 -11.11329 -10.69041 -10.48996 -10.44868 -10.38408 -9.99118 -9.69643 -9.58930 -9.18839 -9.14617 -9.06790 -8.94247 -7.23974 -6.36202 -3.29799 2.56234 2.97079 3.37887 3.41388 3.43823 3.61703 3.83536 4.12583 4.24821 4.34106 4.49922 4.53965 4.55276 4.65207 4.74285 4.81334 4.89361 4.93233 4.97497 5.02892 5.07520 5.13184 5.16138 5.20891 5.31375 5.36381 5.38642 5.39515 5.48026 5.49331 5.55710 5.58368 5.77622 5.83387 5.87274 5.90985 5.95349 6.11654 6.13886 6.18299 6.20887 6.27886 6.30598 6.33289 6.50446 6.97045 7.03045 7.21116 7.38710 8.14695 8.17010 8.91014 9.42832 10.26735 11.15375 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021970 B = 0.002213 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.186985 B =12652.140513 C =13021.191224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.344 6.344 3 C 0.111 3.889 4 C -0.162 4.162 5 C 0.511 3.489 6 O -0.522 6.522 7 N -0.728 5.728 8 C 0.129 3.871 9 C 0.063 3.937 10 H 0.074 0.926 11 C -0.145 4.145 12 C -0.115 4.115 13 C 0.060 3.940 14 C 0.111 3.889 15 N -0.620 5.620 16 C -0.302 4.302 17 H 0.084 0.916 18 C -0.023 4.023 19 N -0.933 5.933 20 Si 1.070 2.930 21 H -0.294 1.294 22 H -0.292 1.292 23 H -0.288 1.288 24 C 0.113 3.887 25 O -0.355 6.355 26 C -0.165 4.165 27 C -0.135 4.135 28 C -0.119 4.119 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.404 0.596 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.048 0.952 42 H 0.044 0.956 43 H 0.261 0.739 44 H 0.052 0.948 45 H 0.057 0.943 46 H 0.089 0.911 47 H 0.073 0.927 48 H 0.083 0.917 49 H 0.068 0.932 50 H 0.082 0.918 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.855 -5.802 25.059 28.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.261 6.261 3 C 0.071 3.929 4 C -0.202 4.202 5 C 0.297 3.703 6 O -0.398 6.398 7 N -0.381 5.381 8 C 0.006 3.994 9 C 0.004 3.996 10 H 0.092 0.908 11 C -0.184 4.184 12 C -0.153 4.153 13 C 0.020 3.980 14 C -0.016 4.016 15 N -0.350 5.350 16 C -0.428 4.428 17 H 0.102 0.898 18 C -0.222 4.222 19 N -0.575 5.575 20 Si 0.902 3.098 21 H -0.221 1.221 22 H -0.220 1.220 23 H -0.215 1.215 24 C -0.012 4.012 25 O -0.273 6.273 26 C -0.203 4.203 27 C -0.173 4.173 28 C -0.156 4.156 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.238 0.762 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.108 0.892 47 H 0.091 0.909 48 H 0.102 0.898 49 H 0.087 0.913 50 H 0.101 0.899 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.994 -7.862 24.606 28.480 hybrid contribution 0.605 2.129 0.195 2.222 sum 12.599 -5.732 24.801 28.402 Atomic orbital electron populations 1.22738 0.81640 1.02704 0.99871 1.88028 1.18999 1.24710 1.94408 1.22191 0.95482 0.83821 0.91448 1.22256 1.03761 1.00842 0.93390 1.20429 0.79043 0.86093 0.84740 1.90741 1.42398 1.19573 1.87058 1.45982 1.63701 1.22470 1.05949 1.21446 1.00143 0.96212 0.81622 1.23211 0.83850 0.97989 0.94516 0.90796 1.22949 0.99605 1.01560 0.94239 1.22337 0.94929 1.00181 0.97819 1.23605 0.97905 0.95858 0.80674 1.22671 0.92906 0.93425 0.92577 1.45799 1.36409 1.28097 1.24689 1.20133 1.16722 1.07420 0.98498 0.89797 1.25706 0.95311 1.05477 0.95674 1.70922 1.44885 1.15377 1.26279 0.83734 0.75739 0.75378 0.74907 1.22130 1.21990 1.21496 1.22689 0.92709 0.91946 0.93872 1.88941 1.21044 1.88946 1.28338 1.23609 0.99017 1.00399 0.97249 1.22796 0.96681 1.01242 0.96554 1.22926 0.93598 1.03364 0.95743 0.94136 0.89586 0.94037 0.87962 0.88509 0.76220 0.90721 0.90362 0.90424 0.90294 0.90390 0.89580 0.93421 0.93839 0.92880 0.93032 0.92531 0.89202 0.90876 0.89789 0.91285 0.89920 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.37 101.05 1.05 1.28 16 2 O -0.34 -3.93 9.60 -52.37 -0.50 -4.43 16 3 C 0.11 1.00 0.39 -89.81 -0.03 0.96 16 4 C -0.16 -1.31 4.73 -27.88 -0.13 -1.45 16 5 C 0.51 5.78 7.59 -10.98 -0.08 5.70 16 6 O -0.52 -7.85 14.96 -11.57 -0.17 -8.02 16 7 N -0.73 -7.51 5.51 -60.30 -0.33 -7.84 16 8 C 0.13 1.43 5.28 -4.04 -0.02 1.41 16 9 C 0.06 0.74 3.35 -25.91 -0.09 0.65 16 10 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 11 C -0.15 -1.67 6.65 -24.98 -0.17 -1.84 16 12 C -0.11 -1.77 6.50 -25.62 -0.17 -1.94 16 13 C 0.06 1.06 1.39 -91.01 -0.13 0.93 16 14 C 0.11 2.16 8.18 -7.85 -0.06 2.10 16 15 N -0.62 -15.13 3.68 -184.88 -0.68 -15.80 16 16 C -0.30 -8.60 11.09 -15.06 -0.17 -8.77 16 17 H 0.08 2.50 8.05 -52.49 -0.42 2.08 16 18 C -0.02 -0.68 5.50 -17.43 -0.10 -0.77 16 19 N -0.93 -29.21 13.70 55.49 0.76 -28.45 16 20 Si 1.07 26.80 25.03 -169.99 -4.25 22.55 16 21 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 22 H -0.29 -6.86 6.58 56.52 0.37 -6.49 16 23 H -0.29 -6.80 6.42 56.52 0.36 -6.44 16 24 C 0.11 2.45 5.45 -7.71 -0.04 2.41 16 25 O -0.35 -5.48 11.12 -35.23 -0.39 -5.87 16 26 C -0.17 -1.10 7.22 -25.83 -0.19 -1.29 16 27 C -0.14 -0.95 8.02 -25.83 -0.21 -1.16 16 28 C -0.12 -1.03 6.81 -25.92 -0.18 -1.20 16 29 H 0.04 0.37 7.02 -51.93 -0.36 0.00 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.28 7.04 -51.93 -0.37 -0.08 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.69 6.94 -51.93 -0.36 0.33 16 34 H 0.40 3.54 8.47 -40.82 -0.35 3.19 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.23 8.12 -51.93 -0.42 0.81 16 40 H 0.09 1.38 7.92 -51.93 -0.41 0.97 16 41 H 0.05 0.88 8.07 -51.93 -0.42 0.46 16 42 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.26 8.06 8.73 -40.82 -0.36 7.70 16 44 H 0.05 1.12 8.02 -51.93 -0.42 0.70 16 45 H 0.06 1.26 4.11 -51.93 -0.21 1.05 16 46 H 0.09 0.46 8.10 -51.93 -0.42 0.04 16 47 H 0.07 0.48 7.22 -51.93 -0.37 0.10 16 48 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 51 H 0.09 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 397.44 15.07 5.99 5.99 Total: -1.00 -34.69 397.44 -9.11 -43.79 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -8.81 Total: 1.07 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -0.71 Total: -2.97 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.25 Total: -52.10 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -1.07 Total: -18.32 kcal Atomic # 14 Polarization: 26.80 SS G_CDS: -4.25 Total: 22.55 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.69 -9.11 -43.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273654668.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.858 kcal (2) G-P(sol) polarization free energy of solvation -34.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds