Wall clock time and date at job start Tue Mar 31 2020 21:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00048 * 2 1 4 4 C 1.53005 * 112.84863 * 302.14799 * 3 2 1 5 5 C 1.50702 * 109.46546 * 298.78447 * 4 3 2 6 6 O 1.21273 * 120.00439 * 5.49037 * 5 4 3 7 7 N 1.34782 * 119.99727 * 185.48593 * 5 4 3 8 8 C 1.46500 * 119.99967 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.46992 * 180.02562 * 8 7 5 10 10 H 1.09000 * 110.29096 * 57.87117 * 9 8 7 11 11 C 1.54563 * 110.32040 * 180.02562 * 9 8 7 12 12 C 1.54774 * 104.07375 * 142.48745 * 11 9 8 13 13 C 1.53339 * 103.67751 * 359.13346 * 12 11 9 14 14 C 1.52316 * 116.12899 * 108.91108 * 13 12 11 15 15 N 1.47286 * 87.68579 * 91.18419 * 14 13 12 16 16 C 1.36938 * 135.92801 * 206.13158 * 15 14 13 17 17 H 1.08002 * 120.00060 * 357.84748 * 16 15 14 18 18 C 1.38809 * 119.99716 * 177.85013 * 16 15 14 19 19 N 1.31621 * 119.99777 * 176.60131 * 18 16 15 20 20 Si 1.86797 * 120.00225 * 356.59483 * 18 16 15 21 21 H 1.48504 * 109.47010 * 176.63668 * 20 18 16 22 22 H 1.48495 * 109.47202 * 296.63787 * 20 18 16 23 23 H 1.48500 * 109.47044 * 56.64016 * 20 18 16 24 24 C 1.47281 * 88.14184 * 26.38140 * 15 14 13 25 25 O 1.43108 * 106.44686 * 337.45577 * 13 12 11 26 26 C 1.53780 * 113.61637 * 73.33829 * 3 2 1 27 27 C 1.53952 * 87.01821 * 89.23050 * 26 3 2 28 28 C 1.53778 * 113.61941 * 170.94842 * 3 2 1 29 29 H 1.08996 * 109.46829 * 66.81643 * 1 2 3 30 30 H 1.09000 * 109.47003 * 186.81672 * 1 2 3 31 31 H 1.08993 * 109.47213 * 306.81978 * 1 2 3 32 32 H 1.09001 * 109.47317 * 178.78951 * 4 3 2 33 33 H 1.09001 * 109.47303 * 58.78456 * 4 3 2 34 34 H 0.97001 * 119.99684 * 0.02562 * 7 5 4 35 35 H 1.08997 * 109.47291 * 60.00141 * 8 7 5 36 36 H 1.09001 * 109.46696 * 300.00131 * 8 7 5 37 37 H 1.08993 * 110.51109 * 23.83706 * 11 9 8 38 38 H 1.08997 * 110.61972 * 261.18850 * 11 9 8 39 39 H 1.09000 * 110.57626 * 240.58635 * 12 11 9 40 40 H 1.08996 * 110.71141 * 117.74590 * 12 11 9 41 41 H 1.08999 * 113.51334 * 336.48158 * 14 13 12 42 42 H 1.08996 * 113.58209 * 205.89947 * 14 13 12 43 43 H 0.97005 * 119.99913 * 354.81147 * 19 18 16 44 44 H 1.09000 * 113.51870 * 88.32286 * 24 15 14 45 45 H 1.09002 * 113.51691 * 218.91171 * 24 15 14 46 46 H 1.09003 * 113.61950 * 203.75498 * 26 3 2 47 47 H 1.09001 * 113.61476 * 334.65174 * 26 3 2 48 48 H 1.09001 * 113.53808 * 270.81392 * 27 26 3 49 49 H 1.09003 * 113.74217 * 139.94715 * 27 26 3 50 50 H 1.09004 * 113.61228 * 25.34188 * 28 3 2 51 51 H 1.08997 * 113.61816 * 156.16374 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5665 2.1534 -1.1938 5 6 1.9985 1.4843 -2.4732 6 8 2.5128 0.3866 -2.4398 7 7 1.8132 2.1061 -3.6546 8 6 2.2326 1.4555 -4.8984 9 6 1.9118 2.3675 -6.0843 10 1 2.4079 3.3307 -5.9654 11 6 2.3462 1.6990 -7.4084 12 6 1.2372 2.0964 -8.4122 13 6 0.2664 2.9311 -7.5683 14 6 0.2414 4.4264 -7.8572 15 7 -0.8335 4.1602 -8.8283 16 6 -1.3047 4.7627 -9.9642 17 1 -0.8642 5.6870 -10.3076 18 6 -2.3484 4.1853 -10.6741 19 7 -2.8459 4.7979 -11.7276 20 14 -3.0470 2.5390 -10.1346 21 1 -4.1980 2.1815 -11.0021 22 1 -1.9976 1.4946 -10.2491 23 1 -3.5007 2.6323 -8.7237 24 6 -1.1842 2.9663 -8.0404 25 8 0.4818 2.5487 -6.2062 26 6 1.8918 2.0326 1.3499 27 6 3.2335 1.3794 1.7283 28 6 3.5320 1.3024 0.2217 29 1 -0.3633 0.4046 -0.9447 30 1 -0.3633 -1.0204 0.1220 31 1 -0.3633 0.6158 0.8226 32 1 2.0234 3.1408 -1.1280 33 1 0.4812 2.2538 -1.1848 34 1 1.4022 2.9843 -3.6813 35 1 1.7007 0.5109 -5.0117 36 1 3.3056 1.2666 -4.8657 37 1 2.3874 0.6159 -7.2939 38 1 3.3122 2.0846 -7.7342 39 1 0.7393 1.2094 -8.8039 40 1 1.6493 2.6938 -9.2254 41 1 1.1590 4.7963 -8.3147 42 1 -0.0794 5.0294 -7.0078 43 1 -2.5353 5.6860 -11.9638 44 1 -1.8971 3.1670 -7.2406 45 1 -1.4653 2.1088 -8.6518 46 1 1.9426 3.1183 1.2670 47 1 1.0529 1.6923 1.9569 48 1 3.1244 0.4039 2.2022 49 1 3.9059 2.0419 2.2733 50 1 4.0154 0.3733 -0.0807 51 1 4.0324 2.1873 -0.1715 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273654668.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:04 Heat of formation + Delta-G solvation = -59.969276 kcal Electronic energy + Delta-G solvation = -30193.671835 eV Core-core repulsion = 26095.420592 eV Total energy + Delta-G solvation = -4098.251243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.75792 -41.37415 -39.79725 -38.37566 -36.51273 -35.61058 -34.48726 -33.19062 -31.88195 -30.45472 -28.66609 -27.92073 -27.30328 -26.43757 -25.27989 -23.86916 -23.23721 -22.29818 -21.26487 -20.75596 -20.33486 -19.53594 -18.19794 -17.73642 -17.48256 -17.24166 -17.10526 -16.52633 -16.40227 -16.13669 -16.07939 -15.88817 -15.28404 -15.15664 -15.09797 -14.71844 -14.62628 -14.46048 -14.17977 -13.73631 -13.43032 -13.26615 -13.13500 -13.03082 -12.82197 -12.69922 -12.58129 -12.48578 -12.30833 -12.25476 -12.06955 -11.86495 -11.67423 -11.64046 -11.33398 -11.22730 -11.12051 -11.07053 -10.82919 -10.48055 -10.28282 -10.04165 -9.28197 -8.66692 -5.52038 1.35999 1.44469 1.64258 1.73293 2.18450 2.49455 2.58757 2.82120 2.96307 3.19267 3.38454 3.50419 3.59621 3.67131 3.67980 3.72435 3.93781 3.95874 4.10633 4.12610 4.36320 4.37012 4.41634 4.42938 4.46012 4.47299 4.52338 4.58198 4.59363 4.61160 4.68785 4.79146 4.81294 4.82572 4.85207 4.89154 4.94301 4.98628 5.06904 5.07375 5.11925 5.17108 5.21440 5.29411 5.41849 5.47372 5.90074 5.94883 6.40006 6.60412 6.64768 7.26823 7.33749 8.18867 8.87380 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021970 B = 0.002213 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.186985 B =12652.140513 C =13021.191224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.376 6.376 3 C 0.097 3.903 4 C -0.158 4.158 5 C 0.508 3.492 6 O -0.566 6.566 7 N -0.723 5.723 8 C 0.134 3.866 9 C 0.065 3.935 10 H 0.095 0.905 11 C -0.135 4.135 12 C -0.120 4.120 13 C 0.084 3.916 14 C 0.111 3.889 15 N -0.649 5.649 16 C -0.285 4.285 17 H 0.057 0.943 18 C -0.081 4.081 19 N -0.969 5.969 20 Si 1.105 2.895 21 H -0.303 1.303 22 H -0.269 1.269 23 H -0.268 1.268 24 C 0.101 3.899 25 O -0.361 6.361 26 C -0.152 4.152 27 C -0.133 4.133 28 C -0.125 4.125 29 H 0.034 0.966 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.133 0.867 33 H 0.109 0.891 34 H 0.413 0.587 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.248 0.752 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.113 0.887 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.086 0.914 50 H 0.051 0.949 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.160 -5.819 27.594 31.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.295 6.295 3 C 0.057 3.943 4 C -0.197 4.197 5 C 0.295 3.705 6 O -0.444 6.444 7 N -0.376 5.376 8 C 0.010 3.990 9 C 0.007 3.993 10 H 0.112 0.888 11 C -0.173 4.173 12 C -0.157 4.157 13 C 0.043 3.957 14 C -0.015 4.015 15 N -0.379 5.379 16 C -0.413 4.413 17 H 0.074 0.926 18 C -0.273 4.273 19 N -0.614 5.614 20 Si 0.932 3.068 21 H -0.231 1.231 22 H -0.196 1.196 23 H -0.194 1.194 24 C -0.024 4.024 25 O -0.280 6.280 26 C -0.189 4.189 27 C -0.170 4.170 28 C -0.162 4.162 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.151 0.849 33 H 0.127 0.873 34 H 0.249 0.751 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.123 0.877 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.131 0.869 47 H 0.093 0.907 48 H 0.089 0.911 49 H 0.105 0.895 50 H 0.070 0.930 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.336 -7.856 27.191 31.287 hybrid contribution 0.299 2.185 -0.520 2.266 sum 13.635 -5.671 26.670 30.486 Atomic orbital electron populations 1.22817 0.80727 1.03298 1.00293 1.87984 1.20230 1.26620 1.94658 1.22436 0.95419 0.83422 0.93032 1.22321 1.04641 1.01670 0.91114 1.21003 0.78103 0.85585 0.85765 1.90730 1.44443 1.21538 1.87675 1.45971 1.63294 1.22731 1.05575 1.21357 1.00597 0.95288 0.81722 1.23408 0.81790 0.99189 0.94900 0.88770 1.22945 0.99289 1.02493 0.92613 1.22366 0.95682 0.99444 0.98253 1.23098 0.95574 0.94706 0.82334 1.22849 0.91796 0.95231 0.91582 1.45824 1.38037 1.29333 1.24739 1.19993 1.15516 1.06046 0.99708 0.92558 1.26920 0.96324 1.08364 0.95722 1.71014 1.46749 1.15297 1.28352 0.83310 0.75482 0.72623 0.75380 1.23113 1.19606 1.19370 1.22853 0.95620 0.90478 0.93474 1.88927 1.23662 1.88754 1.26609 1.23585 0.98568 1.01429 0.95366 1.22769 0.97519 1.01159 0.95562 1.23000 0.93634 1.02513 0.97068 0.94746 0.89461 0.92060 0.84872 0.87336 0.75107 0.92505 0.89164 0.89251 0.87748 0.90906 0.90401 0.92265 0.92787 0.94281 0.92963 0.93015 0.86856 0.90674 0.91054 0.89547 0.92977 0.87727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.37 113.37 1.18 1.59 16 2 O -0.38 -8.41 9.60 -132.59 -1.27 -9.68 16 3 C 0.10 1.57 0.39 -10.27 0.00 1.57 16 4 C -0.16 -2.12 4.73 29.85 0.14 -1.98 16 5 C 0.51 10.51 7.59 87.66 0.67 11.18 16 6 O -0.57 -16.65 14.96 13.38 0.20 -16.45 16 7 N -0.72 -12.91 5.51 -463.07 -2.55 -15.47 16 8 C 0.13 2.59 5.28 86.38 0.46 3.05 16 9 C 0.06 1.28 3.35 31.12 0.10 1.38 16 10 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 11 C -0.14 -2.61 6.65 31.73 0.21 -2.40 16 12 C -0.12 -3.37 6.50 31.31 0.20 -3.17 16 13 C 0.08 2.74 1.39 -11.04 -0.02 2.73 16 14 C 0.11 4.09 8.18 83.49 0.68 4.77 16 15 N -0.65 -31.10 3.68 -740.31 -2.72 -33.82 16 16 C -0.29 -16.47 11.09 84.03 0.93 -15.54 16 17 H 0.06 3.48 8.05 -2.91 -0.02 3.45 16 18 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 19 N -0.97 -62.47 13.70 21.65 0.30 -62.17 16 20 Si 1.11 54.06 25.03 68.60 1.72 55.78 16 21 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 22 H -0.27 -12.04 6.58 99.48 0.65 -11.39 16 23 H -0.27 -12.07 6.42 99.48 0.64 -11.43 16 24 C 0.10 4.16 5.45 83.58 0.46 4.62 16 25 O -0.36 -10.00 11.12 -148.98 -1.66 -11.66 16 26 C -0.15 -1.60 7.22 31.18 0.23 -1.37 16 27 C -0.13 -1.64 8.02 31.18 0.25 -1.39 16 28 C -0.12 -2.01 6.81 31.12 0.21 -1.80 16 29 H 0.03 0.59 7.02 -2.39 -0.02 0.57 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 0.73 7.04 -2.39 -0.02 0.71 16 32 H 0.13 0.93 8.14 -2.39 -0.02 0.92 16 33 H 0.11 1.22 6.94 -2.39 -0.02 1.21 16 34 H 0.41 5.82 8.47 -92.71 -0.79 5.03 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.09 1.56 7.87 -2.39 -0.02 1.54 16 38 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 40 H 0.08 2.33 7.92 -2.39 -0.02 2.31 16 41 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 42 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.25 15.99 8.73 -92.70 -0.81 15.18 16 44 H 0.05 2.16 8.02 -2.39 -0.02 2.14 16 45 H 0.05 2.20 4.11 -2.39 -0.01 2.19 16 46 H 0.11 0.67 8.10 -2.39 -0.02 0.65 16 47 H 0.07 0.78 7.22 -2.39 -0.02 0.76 16 48 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.10 1.28 8.10 -2.39 -0.02 1.26 16 Total: -1.00 -77.94 397.44 0.15 -77.80 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -0.02 Total: 16.83 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 6.16 Total: -1.15 kcal Atomic # 7 Polarization: -106.48 SS G_CDS: -4.98 Total: -111.46 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -2.73 Total: -37.79 kcal Atomic # 14 Polarization: 54.06 SS G_CDS: 1.72 Total: 55.78 kcal Total: -77.94 0.15 -77.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273654668.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.826 kcal (2) G-P(sol) polarization free energy of solvation -77.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds