Wall clock time and date at job start Tue Mar 31 2020 21:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00050 * 2 1 4 4 C 1.53000 * 112.85209 * 294.97545 * 3 2 1 5 5 C 1.50699 * 109.47068 * 299.31929 * 4 3 2 6 6 O 1.21287 * 119.99930 * 354.43971 * 5 4 3 7 7 N 1.34775 * 119.99955 * 174.44167 * 5 4 3 8 8 C 1.46507 * 120.00098 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47212 * 180.02562 * 8 7 5 10 10 H 1.08994 * 110.29228 * 307.14035 * 9 8 7 11 11 C 1.54551 * 110.32567 * 185.00077 * 9 8 7 12 12 C 1.54735 * 104.06879 * 217.47171 * 11 9 8 13 13 C 1.53464 * 103.72607 * 0.77003 * 12 11 9 14 14 C 1.52880 * 115.58035 * 252.69385 * 13 12 11 15 15 N 1.47785 * 85.78598 * 219.72949 * 14 13 12 16 16 C 1.36932 * 134.40515 * 203.85181 * 15 14 13 17 17 H 1.08002 * 120.00381 * 180.02562 * 16 15 14 18 18 C 1.38813 * 119.99856 * 0.02695 * 16 15 14 19 19 N 1.31619 * 120.00341 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99822 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47020 * 60.00296 * 20 18 16 22 22 H 1.48507 * 109.46940 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47349 * 300.00192 * 20 18 16 24 24 C 1.47788 * 91.19091 * 23.87504 * 15 14 13 25 25 O 1.43251 * 106.25810 * 22.70920 * 13 12 11 26 26 C 1.53784 * 113.61305 * 66.17296 * 3 2 1 27 27 C 1.53949 * 87.01935 * 89.22981 * 26 3 2 28 28 C 1.53769 * 87.11317 * 25.36435 * 27 26 3 29 29 H 1.09004 * 109.46718 * 176.51180 * 1 2 3 30 30 H 1.08997 * 109.47131 * 296.51784 * 1 2 3 31 31 H 1.09003 * 109.46979 * 56.51202 * 1 2 3 32 32 H 1.08996 * 109.47158 * 179.31666 * 4 3 2 33 33 H 1.09000 * 109.46991 * 59.31762 * 4 3 2 34 34 H 0.96999 * 120.00150 * 359.97438 * 7 5 4 35 35 H 1.08997 * 109.47170 * 300.00424 * 8 7 5 36 36 H 1.09003 * 109.46798 * 59.99573 * 8 7 5 37 37 H 1.08994 * 110.51170 * 336.11773 * 11 9 8 38 38 H 1.09001 * 110.50680 * 98.69126 * 11 9 8 39 39 H 1.09002 * 110.57554 * 119.33200 * 12 11 9 40 40 H 1.08999 * 110.57603 * 242.05741 * 12 11 9 41 41 H 1.09007 * 113.82263 * 333.94578 * 14 13 12 42 42 H 1.09002 * 113.82550 * 105.51632 * 14 13 12 43 43 H 0.96993 * 120.00311 * 179.97438 * 19 18 16 44 44 H 1.09009 * 113.81684 * 221.90928 * 24 15 14 45 45 H 1.08996 * 113.93369 * 90.35719 * 24 15 14 46 46 H 1.09004 * 113.61502 * 203.75472 * 26 3 2 47 47 H 1.09004 * 113.60763 * 334.64744 * 26 3 2 48 48 H 1.09009 * 113.53583 * 270.80915 * 27 26 3 49 49 H 1.08998 * 113.66404 * 139.93846 * 27 26 3 50 50 H 1.09003 * 113.61424 * 220.09212 * 28 27 26 51 51 H 1.08997 * 113.69500 * 89.20182 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7081 2.0904 -1.2781 5 6 2.2698 1.3521 -2.4657 6 8 2.9404 0.3554 -2.2984 7 7 2.0269 1.7993 -3.7136 8 6 2.5735 1.0818 -4.8682 9 6 2.1535 1.7930 -6.1561 10 1 1.0727 1.9323 -6.1758 11 6 2.6132 0.9843 -7.3903 12 6 3.0355 2.0661 -8.4129 13 6 2.7984 3.3855 -7.6659 14 6 1.5960 4.2038 -8.1369 15 7 2.4627 5.3853 -7.9445 16 6 2.2324 6.7152 -7.7137 17 1 3.0635 7.3967 -7.6071 18 6 0.9307 7.1875 -7.6166 19 7 -0.0822 6.3570 -7.7459 20 14 0.6165 9.0017 -7.3010 21 1 1.2086 9.8052 -8.4005 22 1 -0.8468 9.2474 -7.2402 23 1 1.2379 9.3946 -6.0107 24 6 3.6773 4.5581 -8.1015 25 8 2.8287 3.0670 -6.2696 26 6 1.7408 2.0997 1.2890 27 6 3.0287 1.4705 1.8505 28 6 3.4967 1.3180 0.3937 29 1 -0.3633 -1.0258 -0.0625 30 1 -0.3633 0.4588 0.9195 31 1 -0.3633 0.5670 -0.8571 32 1 2.1652 3.0778 -1.2147 33 1 0.6293 2.1962 -1.3930 34 1 1.4904 2.5962 -3.8475 35 1 3.6613 1.0626 -4.8023 36 1 2.1918 0.0608 -4.8754 37 1 3.4606 0.3478 -7.1359 38 1 1.7910 0.3855 -7.7823 39 1 4.0883 1.9570 -8.6731 40 1 2.4137 2.0120 -9.3065 41 1 1.3209 4.0241 -9.1762 42 1 0.7448 4.1669 -7.4569 43 1 -0.9917 6.6870 -7.6777 44 1 4.4699 4.8011 -7.3935 45 1 4.0323 4.4843 -9.1294 46 1 1.8039 3.1800 1.1575 47 1 0.8371 1.7882 1.8128 48 1 2.8634 0.5199 2.3578 49 1 3.6356 2.1628 2.4339 50 1 4.0087 0.3763 0.1959 51 1 4.0413 2.1833 0.0157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273654671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:09 Heat of formation + Delta-G solvation = -42.017838 kcal Electronic energy + Delta-G solvation = -30398.439892 eV Core-core repulsion = 26300.967082 eV Total energy + Delta-G solvation = -4097.472810 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.58835 -39.92176 -38.73475 -36.37019 -35.70129 -34.29617 -32.11119 -31.85406 -30.85066 -28.95218 -27.26398 -26.81046 -25.65334 -25.06064 -24.18524 -22.99685 -21.62387 -21.00895 -20.16099 -19.57921 -19.01776 -17.17489 -16.70381 -16.62827 -16.33350 -15.99284 -15.61136 -15.25319 -15.08906 -14.83268 -14.44285 -14.29425 -14.23787 -14.08047 -13.77573 -13.42857 -13.13034 -12.93925 -12.67208 -12.51790 -12.43534 -12.10012 -11.73078 -11.55778 -11.52090 -11.42744 -11.22827 -11.18381 -11.08378 -10.98897 -10.91850 -10.81725 -10.46529 -10.29480 -10.08287 -9.79749 -9.75678 -9.50411 -9.45539 -8.94555 -8.91702 -8.81100 -6.88526 -5.76392 -3.07826 2.77386 3.19628 3.39182 3.43105 3.44145 3.56232 4.07284 4.27935 4.40435 4.44866 4.52073 4.66356 4.75120 4.89191 4.96984 5.07754 5.11096 5.13137 5.16966 5.24027 5.29465 5.33523 5.36698 5.37147 5.50388 5.51608 5.54270 5.57528 5.63696 5.68719 5.69441 5.75159 5.95941 6.01052 6.02559 6.08447 6.10837 6.20087 6.27456 6.38100 6.51154 6.54353 6.62719 6.97484 7.13106 7.18455 7.47777 7.61943 7.65762 7.97637 8.35603 9.04414 9.70796 10.58570 11.40864 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011151 B = 0.002812 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.335310 B = 9955.460814 C =11541.209731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.346 6.346 3 C 0.111 3.889 4 C -0.162 4.162 5 C 0.515 3.485 6 O -0.529 6.529 7 N -0.727 5.727 8 C 0.132 3.868 9 C 0.061 3.939 10 H 0.074 0.926 11 C -0.143 4.143 12 C -0.140 4.140 13 C 0.057 3.943 14 C 0.153 3.847 15 N -0.605 5.605 16 C -0.219 4.219 17 H 0.079 0.921 18 C -0.008 4.008 19 N -0.923 5.923 20 Si 0.911 3.089 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.129 3.871 25 O -0.333 6.333 26 C -0.166 4.166 27 C -0.137 4.137 28 C -0.115 4.115 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.406 0.594 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.034 0.966 42 H 0.076 0.924 43 H 0.253 0.747 44 H 0.051 0.949 45 H 0.047 0.953 46 H 0.091 0.909 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.068 0.932 50 H 0.082 0.918 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.051 -13.139 12.484 18.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.264 6.264 3 C 0.071 3.929 4 C -0.202 4.202 5 C 0.301 3.699 6 O -0.405 6.405 7 N -0.380 5.380 8 C 0.008 3.992 9 C 0.002 3.998 10 H 0.092 0.908 11 C -0.182 4.182 12 C -0.179 4.179 13 C 0.016 3.984 14 C 0.028 3.972 15 N -0.331 5.331 16 C -0.346 4.346 17 H 0.097 0.903 18 C -0.204 4.204 19 N -0.571 5.571 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.003 3.997 25 O -0.252 6.252 26 C -0.203 4.203 27 C -0.174 4.174 28 C -0.152 4.152 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.125 0.875 33 H 0.111 0.889 34 H 0.241 0.759 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.052 0.948 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.109 0.891 47 H 0.091 0.909 48 H 0.101 0.899 49 H 0.087 0.913 50 H 0.101 0.899 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.542 -13.611 12.834 18.880 hybrid contribution -0.978 1.637 -0.362 1.941 sum 1.564 -11.975 12.473 17.361 Atomic orbital electron populations 1.22755 0.81853 1.02646 0.99884 1.88032 1.18841 1.25070 1.94506 1.22199 0.95979 0.83654 0.91098 1.22226 1.03182 1.00902 0.93888 1.20378 0.80663 0.85012 0.83895 1.90705 1.38650 1.25448 1.85724 1.46023 1.55041 1.31331 1.05572 1.21397 0.99647 0.94965 0.83200 1.23216 0.97466 0.85191 0.93902 0.90779 1.22873 1.01648 0.98337 0.95302 1.22728 1.01964 0.94480 0.98695 1.23722 1.00751 0.92693 0.81215 1.22582 0.93738 0.83166 0.97734 1.45867 1.00426 1.03913 1.82935 1.18965 0.92190 0.82015 1.41466 0.90325 1.24744 0.95288 0.97924 1.02458 1.69799 0.97804 1.33169 1.56292 0.86210 0.76880 0.84579 0.78149 1.21231 1.21580 1.21109 1.22511 0.92084 0.87610 0.97514 1.89000 1.76990 1.35242 1.23925 1.23616 0.99146 1.00417 0.97171 1.22817 0.96787 1.01076 0.96748 1.22891 0.93921 1.03492 0.94915 0.89674 0.94047 0.94072 0.87500 0.88881 0.75891 0.90886 0.90576 0.90809 0.90568 0.90940 0.90408 0.94842 0.90597 0.93714 0.93076 0.93547 0.89059 0.90931 0.89918 0.91282 0.89879 0.89165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.62 101.05 1.07 1.31 16 2 O -0.35 -4.35 9.82 -48.61 -0.48 -4.83 16 3 C 0.11 1.21 0.38 -89.81 -0.03 1.18 16 4 C -0.16 -1.73 4.90 -27.88 -0.14 -1.87 16 5 C 0.51 7.11 7.60 -10.99 -0.08 7.03 16 6 O -0.53 -8.96 14.93 -7.83 -0.12 -9.08 16 7 N -0.73 -9.76 5.56 -60.29 -0.33 -10.10 16 8 C 0.13 1.78 5.27 -4.04 -0.02 1.75 16 9 C 0.06 0.88 3.33 -25.92 -0.09 0.79 16 10 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 11 C -0.14 -1.77 6.65 -25.00 -0.17 -1.94 16 12 C -0.14 -2.00 6.49 -25.58 -0.17 -2.17 16 13 C 0.06 1.08 1.28 -90.66 -0.12 0.96 16 14 C 0.15 3.56 6.99 -3.40 -0.02 3.53 16 15 N -0.61 -15.66 3.71 -183.58 -0.68 -16.34 16 16 C -0.22 -6.19 10.70 -15.06 -0.16 -6.35 16 17 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 19 N -0.92 -27.08 11.40 55.49 0.63 -26.45 16 20 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.13 2.68 8.47 -3.40 -0.03 2.65 16 25 O -0.33 -6.26 11.13 -35.23 -0.39 -6.65 16 26 C -0.17 -1.42 7.23 -25.83 -0.19 -1.60 16 27 C -0.14 -1.21 8.02 -25.84 -0.21 -1.41 16 28 C -0.11 -1.25 6.57 -25.92 -0.17 -1.42 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.32 6.84 -51.93 -0.36 -0.04 16 31 H 0.04 0.37 6.67 -51.93 -0.35 0.02 16 32 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 0.85 6.87 -51.93 -0.36 0.50 16 34 H 0.41 5.27 8.47 -40.82 -0.35 4.92 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.82 7.87 -51.93 -0.41 0.41 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 40 H 0.08 1.06 7.84 -51.93 -0.41 0.65 16 41 H 0.03 0.78 7.96 -51.92 -0.41 0.37 16 42 H 0.08 1.96 7.20 -51.93 -0.37 1.58 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.05 1.06 8.14 -51.92 -0.42 0.63 16 45 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.09 0.68 8.10 -51.93 -0.42 0.26 16 47 H 0.07 0.58 6.81 -51.93 -0.35 0.23 16 48 H 0.08 0.75 8.14 -51.92 -0.42 0.32 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 51 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 LS Contribution 403.95 15.07 6.09 6.09 Total: -1.00 -34.14 403.95 -9.74 -43.87 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -8.82 Total: 4.30 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -0.61 Total: 2.12 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.38 Total: -52.88 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.99 Total: -20.56 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.14 -9.74 -43.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273654671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.856 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds