Wall clock time and date at job start Tue Mar 31 2020 20:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45196 * 109.47182 * 2 1 4 4 C 1.34230 * 116.99856 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00073 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00189 * 180.02562 * 4 3 2 7 7 H 1.09005 * 109.47008 * 38.14580 * 6 4 3 8 8 C 1.53004 * 109.46988 * 278.15019 * 6 4 3 9 9 N 1.46895 * 109.47232 * 158.14768 * 6 4 3 10 10 C 1.48730 * 110.99945 * 165.18156 * 9 6 4 11 11 C 1.54999 * 103.35468 * 158.81539 * 10 9 6 12 12 C 1.54802 * 102.94249 * 323.04573 * 11 10 9 13 13 C 1.47078 * 111.00070 * 282.33792 * 9 6 4 14 14 C 1.53856 * 110.70929 * 93.72673 * 13 9 6 15 15 C 1.54814 * 101.51112 * 215.40336 * 14 13 9 16 16 N 1.46853 * 105.42426 * 25.07014 * 15 14 13 17 17 C 1.46495 * 124.37297 * 163.03292 * 16 15 14 18 18 C 1.53000 * 109.47134 * 269.70147 * 17 16 15 19 19 C 1.50707 * 109.46999 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99877 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00085 * 180.27588 * 19 18 17 22 22 N 1.31519 * 119.99598 * 359.72540 * 21 19 18 23 23 Si 1.86798 * 120.00106 * 179.72425 * 21 19 18 24 24 H 1.48495 * 109.47027 * 59.99859 * 23 21 19 25 25 H 1.48500 * 109.46950 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46914 * 299.99901 * 23 21 19 27 27 C 1.34674 * 111.25773 * 342.77122 * 16 15 14 28 28 O 1.21280 * 125.07468 * 181.12809 * 27 16 15 29 29 H 1.08993 * 109.47350 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47156 * 299.99984 * 1 2 3 31 31 H 1.09003 * 109.47123 * 59.99606 * 1 2 3 32 32 H 1.09000 * 109.46812 * 239.99821 * 2 1 3 33 33 H 1.09003 * 109.47123 * 120.00394 * 2 1 3 34 34 H 1.09001 * 109.47078 * 59.99993 * 8 6 4 35 35 H 1.09007 * 109.47027 * 179.97438 * 8 6 4 36 36 H 1.09001 * 109.47365 * 299.99618 * 8 6 4 37 37 H 1.09000 * 110.64185 * 40.35046 * 10 9 6 38 38 H 1.08996 * 110.64920 * 277.28757 * 10 9 6 39 39 H 1.08996 * 110.72653 * 204.68238 * 11 10 9 40 40 H 1.09004 * 110.87061 * 81.47721 * 11 10 9 41 41 H 1.08996 * 110.37199 * 263.05713 * 12 11 10 42 42 H 1.09006 * 110.37063 * 140.71830 * 12 11 10 43 43 H 1.08997 * 111.00798 * 333.67334 * 14 13 9 44 44 H 1.09002 * 111.00374 * 97.52966 * 14 13 9 45 45 H 1.09001 * 110.38468 * 266.03456 * 15 14 13 46 46 H 1.08998 * 110.17963 * 143.99888 * 15 14 13 47 47 H 1.08997 * 109.47196 * 149.69447 * 17 16 15 48 48 H 1.09003 * 109.46611 * 29.70065 * 17 16 15 49 49 H 1.08999 * 109.47023 * 59.99982 * 18 17 16 50 50 H 1.08995 * 109.47366 * 299.99827 * 18 17 16 51 51 H 0.96996 * 119.99566 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.3127 3.5818 0.6359 8 6 3.9273 3.4871 -1.4267 9 7 5.2956 2.8982 0.5171 10 6 6.0168 4.1619 0.2086 11 6 7.1673 4.1801 1.2471 12 6 6.5034 3.5812 2.5107 13 6 5.3053 2.7844 1.9835 14 6 5.4034 1.3106 2.4141 15 6 4.5250 1.3021 3.6889 16 7 3.5899 2.4226 3.5264 17 6 2.3559 2.5888 4.2983 18 6 1.2003 1.9036 3.5662 19 6 -0.0690 2.0739 4.3607 20 1 -0.0529 2.6163 5.2945 21 6 -1.2496 1.5321 3.8984 22 7 -1.2691 0.8713 2.7615 23 14 -2.8213 1.7367 4.8870 24 1 -3.1255 3.1821 5.0396 25 1 -3.9421 1.0676 4.1788 26 1 -2.6460 1.1234 6.2280 27 6 4.0160 3.2808 2.5800 28 8 3.4460 4.3016 2.2572 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.9072 3.5161 -1.8095 35 1 4.3436 4.4946 -1.4262 36 1 4.5355 2.8427 -2.0615 37 1 5.3613 5.0218 0.3462 38 1 6.4150 4.1394 -0.8057 39 1 7.5020 5.2005 1.4342 40 1 7.9988 3.5576 0.9165 41 1 6.1671 4.3765 3.1759 42 1 7.1995 2.9212 3.0286 43 1 4.9937 0.6517 1.6486 44 1 6.4326 1.0402 2.6501 45 1 5.1413 1.4509 4.5756 46 1 3.9781 0.3621 3.7624 47 1 2.1370 3.6507 4.4094 48 1 2.4801 2.1384 5.2831 49 1 1.4192 0.8416 3.4552 50 1 1.0761 2.3538 2.5814 51 1 -2.0997 0.4904 2.4362 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273913368.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:23 Heat of formation + Delta-G solvation = -94.087166 kcal Electronic energy + Delta-G solvation = -33291.014058 eV Core-core repulsion = 29191.283352 eV Total energy + Delta-G solvation = -4099.730706 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.56790 -39.69388 -37.71386 -36.28979 -36.02820 -33.97595 -33.34351 -31.82167 -30.89108 -29.33555 -28.78862 -27.72545 -25.26187 -24.79148 -23.53820 -22.32767 -21.81646 -21.08499 -20.44186 -20.05091 -18.56305 -17.54381 -16.79003 -16.63505 -16.18786 -15.71062 -15.57644 -15.33764 -15.11016 -14.71708 -14.47325 -13.93730 -13.62974 -13.52190 -13.28199 -12.95470 -12.77573 -12.73277 -12.45973 -12.20789 -12.13453 -12.04775 -11.99074 -11.89388 -11.51328 -11.40926 -11.21634 -11.14522 -11.06592 -10.95920 -10.92247 -10.72462 -10.68006 -10.46692 -10.08570 -9.92287 -9.82393 -9.76860 -9.66889 -9.25485 -8.39997 -8.32235 -7.93361 -6.05305 -4.08889 2.50736 2.84528 3.01692 3.30134 3.34533 3.36296 3.47981 3.91188 4.38710 4.42021 4.46520 4.59696 4.91267 5.01899 5.08175 5.10780 5.16899 5.29402 5.30427 5.45651 5.48446 5.58143 5.59993 5.66214 5.68595 5.69771 5.75556 5.81296 5.87019 5.87782 5.91521 5.98700 6.03754 6.05621 6.14211 6.33001 6.40506 6.43312 6.55343 6.75642 6.81068 6.81625 6.92559 6.99131 7.39635 7.43613 7.65301 7.80357 7.98802 8.28699 8.31389 8.51663 8.96109 9.55911 11.04054 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013363 B = 0.004703 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.866891 B = 5952.581035 C = 7016.990477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.080 3.920 3 O -0.343 6.343 4 C 0.468 3.532 5 O -0.499 6.499 6 C 0.035 3.965 7 H 0.127 0.873 8 C -0.139 4.139 9 N -0.466 5.466 10 C 0.034 3.966 11 C -0.119 4.119 12 C -0.106 4.106 13 C 0.056 3.944 14 C -0.133 4.133 15 C 0.096 3.904 16 N -0.601 5.601 17 C 0.123 3.877 18 C 0.015 3.985 19 C -0.519 4.519 20 H 0.054 0.946 21 C 0.064 3.936 22 N -0.887 5.887 23 Si 0.896 3.104 24 H -0.278 1.278 25 H -0.287 1.287 26 H -0.278 1.278 27 C 0.498 3.502 28 O -0.529 6.529 29 H 0.064 0.936 30 H 0.135 0.865 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.117 0.883 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.015 0.985 50 H 0.026 0.974 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.085 2.090 -4.956 16.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.007 3.993 3 O -0.258 6.258 4 C 0.311 3.689 5 O -0.387 6.387 6 C -0.074 4.074 7 H 0.144 0.856 8 C -0.197 4.197 9 N -0.191 5.191 10 C -0.093 4.093 11 C -0.157 4.157 12 C -0.145 4.145 13 C -0.037 4.037 14 C -0.171 4.171 15 C -0.027 4.027 16 N -0.332 5.332 17 C 0.003 3.997 18 C -0.023 4.023 19 C -0.558 4.558 20 H 0.073 0.927 21 C -0.137 4.137 22 N -0.526 5.526 23 Si 0.724 3.276 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.204 1.204 27 C 0.284 3.716 28 O -0.408 6.408 29 H 0.083 0.917 30 H 0.153 0.847 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.135 0.865 44 H 0.105 0.895 45 H 0.086 0.914 46 H 0.098 0.902 47 H 0.089 0.911 48 H 0.084 0.916 49 H 0.033 0.967 50 H 0.044 0.956 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.992 1.741 -5.426 16.038 hybrid contribution -1.383 0.320 0.923 1.693 sum 13.609 2.061 -4.503 14.482 Atomic orbital electron populations 1.22216 0.91602 1.02803 1.06839 1.22935 0.96552 0.79109 1.00746 1.86575 1.23246 1.33143 1.82854 1.23321 0.81156 0.91967 0.72501 1.90454 1.60531 1.42924 1.44838 1.22158 0.91637 0.92635 1.00930 0.85582 1.21811 1.03383 1.01421 0.93048 1.64746 1.12775 1.34377 1.07219 1.23360 0.95060 0.90895 0.99967 1.22507 0.97744 1.01128 0.94331 1.22261 0.94862 0.99219 0.98152 1.22178 0.94564 0.97789 0.89196 1.23115 1.01043 0.95147 0.97790 1.22228 0.91542 0.90948 0.98026 1.48670 1.23168 1.23687 1.37702 1.21892 0.82225 1.01698 0.93908 1.19384 0.90899 0.95507 0.96475 1.21033 0.93065 1.34784 1.06925 0.92736 1.24906 0.98816 0.94975 0.95041 1.69605 1.26956 1.36129 1.19886 0.86607 0.82676 0.78322 0.80041 1.20315 1.21256 1.20391 1.21052 0.86734 0.83576 0.80264 1.90591 1.62380 1.25009 1.62801 0.91695 0.84706 0.93489 0.93049 0.91712 0.90906 0.90784 0.91550 0.92256 0.89371 0.90650 0.90368 0.90980 0.89867 0.86500 0.89458 0.91419 0.90189 0.91115 0.91578 0.96694 0.95581 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.40 10.29 37.16 0.38 -3.02 16 2 C 0.08 1.52 6.19 37.16 0.23 1.75 16 3 O -0.34 -7.09 10.22 -39.26 -0.40 -7.49 16 4 C 0.47 8.95 6.30 36.00 0.23 9.17 16 5 O -0.50 -9.78 13.31 -18.75 -0.25 -10.03 16 6 C 0.04 0.60 2.09 -68.87 -0.14 0.46 16 7 H 0.13 2.53 4.25 -52.15 -0.22 2.30 16 8 C -0.14 -1.86 8.62 37.16 0.32 -1.54 16 9 N -0.47 -6.97 4.44 -210.29 -0.93 -7.91 16 10 C 0.03 0.41 4.99 -1.75 -0.01 0.40 16 11 C -0.12 -1.18 7.07 -24.73 -0.17 -1.35 16 12 C -0.11 -1.25 6.24 -25.65 -0.16 -1.41 16 13 C 0.06 0.85 0.65 -132.19 -0.09 0.76 16 14 C -0.13 -1.92 6.15 -25.33 -0.16 -2.07 16 15 C 0.10 1.44 7.37 -2.89 -0.02 1.42 16 16 N -0.60 -11.19 2.94 -172.40 -0.51 -11.70 16 17 C 0.12 2.59 5.88 -4.04 -0.02 2.57 16 18 C 0.02 0.39 5.30 -27.88 -0.15 0.24 16 19 C -0.52 -14.12 9.11 -34.44 -0.31 -14.43 16 20 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -24.23 10.68 55.43 0.59 -23.64 16 23 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.50 9.35 5.17 -11.14 -0.06 9.29 16 28 O -0.53 -11.46 15.11 5.56 0.08 -11.37 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.13 3.14 5.33 -51.92 -0.28 2.86 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 33 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.84 6.54 -51.93 -0.34 0.50 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.76 7.62 -51.93 -0.40 0.37 16 38 H 0.09 0.88 7.77 -51.93 -0.40 0.48 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.90 7.73 -51.93 -0.40 0.49 16 42 H 0.08 0.80 7.29 -51.93 -0.38 0.42 16 43 H 0.12 2.00 4.47 -51.93 -0.23 1.77 16 44 H 0.09 1.00 7.41 -51.93 -0.38 0.61 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.07 1.57 7.93 -51.93 -0.41 1.15 16 48 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 49 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 392.67 15.07 5.92 5.92 Total: -1.00 -30.90 392.67 -9.23 -40.13 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -8.48 Total: 6.26 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -0.23 Total: 3.87 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: -0.85 Total: -43.25 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.57 Total: -28.89 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.90 -9.23 -40.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273913368.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.953 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds