Wall clock time and date at job start Tue Mar 31 2020 20:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45196 * 109.47182 * 2 1 4 4 C 1.34230 * 116.99856 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00073 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00189 * 180.02562 * 4 3 2 7 7 H 1.09005 * 109.47008 * 38.14580 * 6 4 3 8 8 C 1.53004 * 109.46988 * 278.15019 * 6 4 3 9 9 N 1.46895 * 109.47232 * 158.14768 * 6 4 3 10 10 C 1.48730 * 110.99945 * 165.18156 * 9 6 4 11 11 C 1.54999 * 103.35468 * 158.81539 * 10 9 6 12 12 C 1.54802 * 102.94249 * 323.04573 * 11 10 9 13 13 C 1.47078 * 111.00070 * 282.33792 * 9 6 4 14 14 C 1.53856 * 110.70929 * 93.72673 * 13 9 6 15 15 C 1.54814 * 101.51112 * 215.40336 * 14 13 9 16 16 N 1.46853 * 105.42426 * 25.07014 * 15 14 13 17 17 C 1.46495 * 124.37297 * 163.03292 * 16 15 14 18 18 C 1.53000 * 109.47134 * 269.70147 * 17 16 15 19 19 C 1.50707 * 109.46999 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99877 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00085 * 180.27588 * 19 18 17 22 22 N 1.31519 * 119.99598 * 359.72540 * 21 19 18 23 23 Si 1.86798 * 120.00106 * 179.72425 * 21 19 18 24 24 H 1.48495 * 109.47027 * 59.99859 * 23 21 19 25 25 H 1.48500 * 109.46950 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46914 * 299.99901 * 23 21 19 27 27 C 1.34674 * 111.25773 * 342.77122 * 16 15 14 28 28 O 1.21280 * 125.07468 * 181.12809 * 27 16 15 29 29 H 1.08993 * 109.47350 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47156 * 299.99984 * 1 2 3 31 31 H 1.09003 * 109.47123 * 59.99606 * 1 2 3 32 32 H 1.09000 * 109.46812 * 239.99821 * 2 1 3 33 33 H 1.09003 * 109.47123 * 120.00394 * 2 1 3 34 34 H 1.09001 * 109.47078 * 59.99993 * 8 6 4 35 35 H 1.09007 * 109.47027 * 179.97438 * 8 6 4 36 36 H 1.09001 * 109.47365 * 299.99618 * 8 6 4 37 37 H 1.09000 * 110.64185 * 40.35046 * 10 9 6 38 38 H 1.08996 * 110.64920 * 277.28757 * 10 9 6 39 39 H 1.08996 * 110.72653 * 204.68238 * 11 10 9 40 40 H 1.09004 * 110.87061 * 81.47721 * 11 10 9 41 41 H 1.08996 * 110.37199 * 263.05713 * 12 11 10 42 42 H 1.09006 * 110.37063 * 140.71830 * 12 11 10 43 43 H 1.08997 * 111.00798 * 333.67334 * 14 13 9 44 44 H 1.09002 * 111.00374 * 97.52966 * 14 13 9 45 45 H 1.09001 * 110.38468 * 266.03456 * 15 14 13 46 46 H 1.08998 * 110.17963 * 143.99888 * 15 14 13 47 47 H 1.08997 * 109.47196 * 149.69447 * 17 16 15 48 48 H 1.09003 * 109.46611 * 29.70065 * 17 16 15 49 49 H 1.08999 * 109.47023 * 59.99982 * 18 17 16 50 50 H 1.08995 * 109.47366 * 299.99827 * 18 17 16 51 51 H 0.96996 * 119.99566 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.3127 3.5818 0.6359 8 6 3.9273 3.4871 -1.4267 9 7 5.2956 2.8982 0.5171 10 6 6.0168 4.1619 0.2086 11 6 7.1673 4.1801 1.2471 12 6 6.5034 3.5812 2.5107 13 6 5.3053 2.7844 1.9835 14 6 5.4034 1.3106 2.4141 15 6 4.5250 1.3021 3.6889 16 7 3.5899 2.4226 3.5264 17 6 2.3559 2.5888 4.2983 18 6 1.2003 1.9036 3.5662 19 6 -0.0690 2.0739 4.3607 20 1 -0.0529 2.6163 5.2945 21 6 -1.2496 1.5321 3.8984 22 7 -1.2691 0.8713 2.7615 23 14 -2.8213 1.7367 4.8870 24 1 -3.1255 3.1821 5.0396 25 1 -3.9421 1.0676 4.1788 26 1 -2.6460 1.1234 6.2280 27 6 4.0160 3.2808 2.5800 28 8 3.4460 4.3016 2.2572 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.9072 3.5161 -1.8095 35 1 4.3436 4.4946 -1.4262 36 1 4.5355 2.8427 -2.0615 37 1 5.3613 5.0218 0.3462 38 1 6.4150 4.1394 -0.8057 39 1 7.5020 5.2005 1.4342 40 1 7.9988 3.5576 0.9165 41 1 6.1671 4.3765 3.1759 42 1 7.1995 2.9212 3.0286 43 1 4.9937 0.6517 1.6486 44 1 6.4326 1.0402 2.6501 45 1 5.1413 1.4509 4.5756 46 1 3.9781 0.3621 3.7624 47 1 2.1370 3.6507 4.4094 48 1 2.4801 2.1384 5.2831 49 1 1.4192 0.8416 3.4552 50 1 1.0761 2.3538 2.5814 51 1 -2.0997 0.4904 2.4362 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273913368.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:22 Heat of formation + Delta-G solvation = -113.225531 kcal Electronic energy + Delta-G solvation = -33291.843960 eV Core-core repulsion = 29191.283352 eV Total energy + Delta-G solvation = -4100.560608 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.86198 -41.20365 -39.00387 -37.76384 -37.54489 -35.69610 -34.76924 -33.40535 -32.43680 -30.85597 -30.01636 -28.90799 -26.99317 -26.18089 -24.81877 -23.71625 -23.54603 -22.37961 -21.63487 -21.48422 -19.97277 -19.05019 -18.61745 -17.99504 -17.77419 -17.23888 -16.97319 -16.79710 -16.47348 -16.13239 -15.89513 -15.35621 -15.04578 -14.98894 -14.61328 -14.45419 -14.31528 -14.12255 -13.86229 -13.62987 -13.57067 -13.38334 -13.25696 -13.12145 -12.94290 -12.81816 -12.77298 -12.63086 -12.51173 -12.34268 -12.23323 -12.09348 -12.00129 -11.98088 -11.75278 -11.53393 -11.38977 -11.37244 -11.14555 -11.07944 -10.52047 -9.74581 -9.34374 -8.12636 -6.27159 1.03885 1.39967 1.42220 1.43889 1.50959 1.61340 2.03801 2.43355 2.70665 3.15735 3.23293 3.41579 3.55650 3.66624 3.80677 3.94005 4.04309 4.06092 4.09707 4.15355 4.22337 4.25025 4.27420 4.34163 4.52675 4.55947 4.59558 4.60771 4.66403 4.76839 4.83455 4.86095 4.89588 4.94871 4.97942 4.98308 4.99505 5.11185 5.16482 5.27393 5.31882 5.42039 5.48185 5.56604 5.63181 5.71697 5.75956 5.95685 6.15629 6.23908 6.77335 6.82537 7.04780 7.41654 8.94446 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013363 B = 0.004703 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.866891 B = 5952.581035 C = 7016.990477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.082 3.918 3 O -0.367 6.367 4 C 0.463 3.537 5 O -0.505 6.505 6 C 0.037 3.963 7 H 0.093 0.907 8 C -0.133 4.133 9 N -0.466 5.466 10 C 0.027 3.973 11 C -0.109 4.109 12 C -0.105 4.105 13 C 0.058 3.942 14 C -0.127 4.127 15 C 0.093 3.907 16 N -0.611 5.611 17 C 0.135 3.865 18 C 0.038 3.962 19 C -0.550 4.550 20 H 0.058 0.942 21 C 0.016 3.984 22 N -0.902 5.902 23 Si 0.962 3.038 24 H -0.276 1.276 25 H -0.281 1.281 26 H -0.268 1.268 27 C 0.487 3.513 28 O -0.568 6.568 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.061 0.939 42 H 0.113 0.887 43 H 0.088 0.912 44 H 0.128 0.872 45 H 0.107 0.893 46 H 0.067 0.933 47 H 0.055 0.945 48 H 0.087 0.913 49 H -0.010 1.010 50 H -0.020 1.020 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.431 2.074 -4.771 18.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.009 3.991 3 O -0.283 6.283 4 C 0.306 3.694 5 O -0.394 6.394 6 C -0.072 4.072 7 H 0.110 0.890 8 C -0.191 4.191 9 N -0.191 5.191 10 C -0.099 4.099 11 C -0.147 4.147 12 C -0.143 4.143 13 C -0.036 4.036 14 C -0.164 4.164 15 C -0.030 4.030 16 N -0.342 5.342 17 C 0.014 3.986 18 C 0.000 4.000 19 C -0.589 4.589 20 H 0.076 0.924 21 C -0.184 4.184 22 N -0.540 5.540 23 Si 0.787 3.213 24 H -0.202 1.202 25 H -0.206 1.206 26 H -0.193 1.193 27 C 0.275 3.725 28 O -0.449 6.449 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.130 0.870 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.080 0.920 42 H 0.132 0.868 43 H 0.106 0.894 44 H 0.146 0.854 45 H 0.125 0.875 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.106 0.894 49 H 0.009 0.991 50 H -0.002 1.002 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.374 1.708 -5.243 18.228 hybrid contribution -2.147 0.296 0.815 2.316 sum 15.226 2.004 -4.428 15.983 Atomic orbital electron populations 1.22106 0.91722 1.03679 1.05366 1.22937 0.96484 0.78798 1.00911 1.86583 1.24624 1.33928 1.83178 1.23847 0.80498 0.92988 0.72039 1.90439 1.60372 1.43368 1.45225 1.22130 0.92235 0.90418 1.02451 0.88961 1.21832 1.03633 1.02707 0.90900 1.64840 1.11189 1.36109 1.06950 1.23572 0.95259 0.88885 1.02179 1.22551 0.97102 1.02704 0.92299 1.22353 0.93783 0.99122 0.99037 1.22334 0.93586 0.98383 0.89274 1.23117 1.02799 0.94115 0.96387 1.22495 0.91210 0.89099 1.00170 1.48752 1.22773 1.25013 1.37638 1.21490 0.82340 1.00219 0.94577 1.19052 0.92639 0.93802 0.94525 1.21364 0.94183 1.35755 1.07554 0.92351 1.25780 1.02003 0.94549 0.96114 1.69804 1.27780 1.35820 1.20634 0.85569 0.78646 0.78208 0.78909 1.20184 1.20632 1.19303 1.21874 0.87916 0.82963 0.79750 1.90558 1.63832 1.26860 1.63684 0.89672 0.88596 0.92302 0.90584 0.93595 0.91396 0.88572 0.90305 0.93735 0.87017 0.88666 0.88255 0.91997 0.86830 0.89379 0.85393 0.87538 0.91421 0.92666 0.89442 0.99126 1.00179 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.81 10.29 71.98 0.74 -6.07 16 2 C 0.08 3.26 6.19 71.98 0.45 3.70 16 3 O -0.37 -16.06 10.22 -51.42 -0.53 -16.59 16 4 C 0.46 18.29 6.30 71.24 0.45 18.73 16 5 O -0.51 -20.07 13.31 21.96 0.29 -19.78 16 6 C 0.04 1.29 2.09 44.17 0.09 1.38 16 7 H 0.09 3.92 4.25 -5.96 -0.03 3.90 16 8 C -0.13 -3.51 8.62 71.98 0.62 -2.89 16 9 N -0.47 -13.36 4.44 -819.22 -3.64 -17.00 16 10 C 0.03 0.58 4.99 86.63 0.43 1.02 16 11 C -0.11 -1.72 7.07 31.89 0.23 -1.50 16 12 C -0.10 -2.11 6.24 31.29 0.20 -1.92 16 13 C 0.06 1.66 0.65 3.05 0.00 1.67 16 14 C -0.13 -3.43 6.15 31.50 0.19 -3.23 16 15 C 0.09 2.70 7.37 86.93 0.64 3.34 16 16 N -0.61 -23.32 2.94 -817.80 -2.41 -25.73 16 17 C 0.14 5.96 5.88 86.38 0.51 6.47 16 18 C 0.04 2.04 5.30 29.85 0.16 2.20 16 19 C -0.55 -31.08 9.11 25.60 0.23 -30.84 16 20 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 21 C 0.02 0.86 5.46 84.65 0.46 1.32 16 22 N -0.90 -51.16 10.68 21.45 0.23 -50.93 16 23 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 C 0.49 18.74 5.17 87.61 0.45 19.20 16 28 O -0.57 -25.91 15.11 -3.03 -0.05 -25.96 16 29 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 30 H 0.10 4.71 5.33 -2.38 -0.01 4.70 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.08 2.60 8.13 -2.39 -0.02 2.58 16 33 H 0.05 1.95 8.13 -2.39 -0.02 1.93 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.10 2.07 6.54 -2.38 -0.02 2.05 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.04 1.10 7.62 -2.39 -0.02 1.08 16 38 H 0.11 1.86 7.77 -2.39 -0.02 1.84 16 39 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.06 1.40 7.73 -2.39 -0.02 1.38 16 42 H 0.11 1.62 7.29 -2.38 -0.02 1.60 16 43 H 0.09 2.98 4.47 -2.39 -0.01 2.97 16 44 H 0.13 2.40 7.41 -2.39 -0.02 2.38 16 45 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.05 2.58 7.93 -2.39 -0.02 2.56 16 48 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 49 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 50 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 51 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -72.39 392.67 2.68 -69.71 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.90 Total: 28.09 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 5.85 Total: 12.56 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -5.82 Total: -93.66 kcal Atomic # 8 Polarization: -62.05 SS G_CDS: -0.28 Total: -62.32 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -72.39 2.68 -69.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273913368.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.519 kcal (2) G-P(sol) polarization free energy of solvation -72.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds