Wall clock time and date at job start Tue Mar 31 2020 20:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45200 * 109.47088 * 2 1 4 4 C 1.34229 * 117.00286 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99631 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.00006 * 180.02562 * 4 3 2 7 7 H 1.08996 * 109.47126 * 327.33315 * 6 4 3 8 8 C 1.53000 * 109.46918 * 87.33669 * 6 4 3 9 9 N 1.46906 * 109.46704 * 207.33164 * 6 4 3 10 10 C 1.47458 * 110.99982 * 52.66187 * 9 6 4 11 11 C 1.54412 * 107.24069 * 123.25931 * 10 9 6 12 12 C 1.54649 * 102.91205 * 21.72112 * 11 10 9 13 13 H 1.08994 * 109.97997 * 81.77407 * 12 11 10 14 14 C 1.48172 * 110.99597 * 173.50392 * 9 6 4 15 15 H 1.08993 * 111.87070 * 93.57619 * 14 9 6 16 16 C 1.53134 * 108.06380 * 330.91393 * 14 9 6 17 17 C 1.52875 * 109.40262 * 182.84208 * 16 14 9 18 18 C 1.50365 * 109.25911 * 53.23903 * 17 16 14 19 19 O 1.21280 * 118.87255 * 157.76802 * 18 17 16 20 20 N 1.33612 * 122.32514 * 336.88873 * 18 17 16 21 21 C 1.46504 * 117.46252 * 180.49253 * 20 18 17 22 22 C 1.52994 * 109.47446 * 270.78990 * 21 20 18 23 23 C 1.50697 * 109.47133 * 180.02562 * 22 21 20 24 24 H 1.08001 * 119.99948 * 0.02562 * 23 22 21 25 25 C 1.37882 * 120.00029 * 179.97438 * 23 22 21 26 26 N 1.31516 * 119.99805 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 119.99891 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47352 * 0.02562 * 27 25 23 29 29 H 1.48504 * 109.47166 * 120.00224 * 27 25 23 30 30 H 1.48505 * 109.47280 * 240.00079 * 27 25 23 31 31 H 1.09001 * 109.47102 * 60.00009 * 1 2 3 32 32 H 1.08999 * 109.46949 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.47399 * 300.00175 * 1 2 3 34 34 H 1.09001 * 109.47557 * 239.99994 * 2 1 3 35 35 H 1.09000 * 109.47370 * 119.99515 * 2 1 3 36 36 H 1.09000 * 109.46721 * 174.05129 * 8 6 4 37 37 H 1.09006 * 109.46920 * 294.04792 * 8 6 4 38 38 H 1.08999 * 109.47718 * 54.05095 * 8 6 4 39 39 H 1.09002 * 109.88915 * 242.66911 * 10 9 6 40 40 H 1.09004 * 109.88931 * 3.69627 * 10 9 6 41 41 H 1.09001 * 110.72540 * 263.36590 * 11 10 9 42 42 H 1.09001 * 110.72580 * 140.07290 * 11 10 9 43 43 H 1.09006 * 109.48246 * 302.82189 * 16 14 9 44 44 H 1.08997 * 109.47906 * 62.86421 * 16 14 9 45 45 H 1.08999 * 109.50768 * 173.16959 * 17 16 14 46 46 H 1.08990 * 109.50970 * 293.25691 * 17 16 14 47 47 H 1.09004 * 109.46826 * 30.79179 * 21 20 18 48 48 H 1.09005 * 109.46474 * 150.78999 * 21 20 18 49 49 H 1.09004 * 109.47263 * 299.99922 * 22 21 20 50 50 H 1.08994 * 109.47384 * 60.00020 * 22 21 20 51 51 H 0.96995 * 119.99535 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9376 0.0012 7 1 3.2603 3.6041 -0.5536 8 6 4.0530 3.4340 1.4423 9 7 5.2450 2.9199 -0.6343 10 6 5.1850 2.2840 -1.9634 11 6 5.7279 3.3067 -2.9850 12 6 6.5772 4.2549 -2.1068 13 1 7.5604 3.8187 -1.9308 14 6 5.7764 4.2940 -0.7923 15 1 6.4094 4.5835 0.0465 16 6 4.5882 5.2483 -0.9425 17 6 5.1037 6.6680 -1.1786 18 6 6.0645 6.6608 -2.3352 19 8 6.2660 7.6951 -2.9356 20 7 6.7176 5.5587 -2.7147 21 6 7.6371 5.6751 -3.8493 22 6 6.8777 5.4093 -5.1506 23 6 7.8237 5.5284 -6.3176 24 1 8.8628 5.7692 -6.1480 25 6 7.3629 5.3290 -7.6017 26 7 6.0977 5.0353 -7.8081 27 14 8.5354 5.4774 -9.0483 28 1 9.8939 5.8141 -8.5519 29 1 8.5827 4.1869 -9.7816 30 1 8.0619 6.5485 -9.9614 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 4.5658 4.3958 1.4495 37 1 3.0612 3.5477 1.8800 38 1 4.6263 2.7122 2.0241 39 1 5.8031 1.3863 -1.9732 40 1 4.1537 2.0267 -2.2051 41 1 4.9102 3.8494 -3.4593 42 1 6.3493 2.8130 -3.7321 43 1 3.9773 4.9376 -1.7901 44 1 3.9872 5.2263 -0.0335 45 1 4.2654 7.3265 -1.4060 46 1 5.6135 7.0237 -0.2834 47 1 8.0589 6.6799 -3.8735 48 1 8.4405 4.9462 -3.7420 49 1 6.4559 4.4044 -5.1264 50 1 6.0743 6.1380 -5.2578 51 1 5.7737 4.8946 -8.7115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273914655.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:30 Heat of formation + Delta-G solvation = -106.563156 kcal Electronic energy + Delta-G solvation = -31365.566444 eV Core-core repulsion = 27265.294739 eV Total energy + Delta-G solvation = -4100.271705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.50191 -40.42437 -38.62279 -36.80588 -35.55393 -33.78398 -33.38073 -32.55297 -31.86949 -29.54369 -28.63788 -28.35119 -25.29429 -25.05487 -23.67230 -23.24587 -21.93177 -21.81537 -20.74282 -19.85758 -18.13234 -17.92632 -17.07574 -16.64361 -16.55557 -16.42812 -16.04936 -15.56420 -15.05246 -14.77269 -14.50752 -14.37527 -14.14443 -13.87136 -13.66847 -13.23708 -13.16379 -12.89047 -12.74599 -12.66597 -12.48936 -12.39699 -12.21710 -12.13904 -11.87224 -11.82161 -11.60851 -11.53597 -11.30902 -11.21501 -10.94613 -10.87287 -10.81085 -10.68834 -10.55595 -10.43839 -9.82839 -9.82127 -9.33142 -9.00497 -8.55541 -8.33715 -8.06514 -6.00133 -4.02181 1.97389 2.26320 3.03743 3.31927 3.33292 3.39727 3.44020 3.71424 4.27396 4.33464 4.47345 4.54810 4.57151 4.62179 4.65242 4.70855 4.76796 4.81717 4.92615 5.03472 5.13096 5.21060 5.26725 5.30265 5.34812 5.36912 5.38726 5.42300 5.45381 5.60045 5.62188 5.66624 5.76459 5.81653 5.87490 5.99528 6.16877 6.17794 6.25360 6.31099 6.57085 6.60843 6.63064 6.85432 6.92703 7.57902 7.65552 7.75155 8.00863 8.04745 8.38469 8.65030 9.04535 9.61371 11.11334 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013332 B = 0.003041 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.747954 B = 9205.376091 C =10458.475326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.361 6.361 4 C 0.464 3.536 5 O -0.485 6.485 6 C 0.081 3.919 7 H 0.087 0.913 8 C -0.143 4.143 9 N -0.502 5.502 10 C 0.045 3.955 11 C -0.152 4.152 12 C 0.146 3.854 13 H 0.094 0.906 14 C 0.072 3.928 15 H 0.108 0.892 16 C -0.159 4.159 17 C -0.130 4.130 18 C 0.510 3.490 19 O -0.544 6.544 20 N -0.590 5.590 21 C 0.109 3.891 22 C 0.013 3.987 23 C -0.518 4.518 24 H 0.056 0.944 25 C 0.058 3.942 26 N -0.894 5.894 27 Si 0.893 3.107 28 H -0.272 1.272 29 H -0.284 1.284 30 H -0.284 1.284 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.049 0.951 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.075 0.925 48 H 0.062 0.938 49 H 0.021 0.979 50 H 0.019 0.981 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.817 -7.879 21.481 24.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.278 6.278 4 C 0.305 3.695 5 O -0.370 6.370 6 C -0.028 4.028 7 H 0.104 0.896 8 C -0.200 4.200 9 N -0.228 5.228 10 C -0.082 4.082 11 C -0.191 4.191 12 C 0.040 3.960 13 H 0.112 0.888 14 C -0.036 4.036 15 H 0.126 0.874 16 C -0.197 4.197 17 C -0.171 4.171 18 C 0.298 3.702 19 O -0.422 6.422 20 N -0.321 5.321 21 C -0.012 4.012 22 C -0.025 4.025 23 C -0.557 4.557 24 H 0.074 0.926 25 C -0.143 4.143 26 N -0.533 5.533 27 Si 0.721 3.279 28 H -0.197 1.197 29 H -0.211 1.211 30 H -0.210 1.210 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.117 0.883 46 H 0.114 0.886 47 H 0.094 0.906 48 H 0.081 0.919 49 H 0.039 0.961 50 H 0.038 0.962 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.322 -8.013 21.392 24.672 hybrid contribution -0.091 0.114 -1.541 1.548 sum -9.413 -7.899 19.851 23.346 Atomic orbital electron populations 1.21809 0.92535 1.03028 1.03610 1.23032 0.95402 0.80078 1.02672 1.86504 1.24555 1.32587 1.84169 1.23513 0.80566 0.92554 0.72904 1.90682 1.60216 1.42631 1.43518 1.21561 0.91625 0.90314 0.99338 0.89582 1.21874 1.03036 1.02685 0.92445 1.63683 1.20661 1.16720 1.21716 1.22898 1.00654 0.98411 0.86285 1.23268 1.00775 0.96909 0.98143 1.21360 0.99639 0.83915 0.91074 0.88815 1.22791 0.95731 0.86902 0.98198 0.87406 1.22441 0.98874 0.95087 1.03333 1.21581 0.99618 0.97882 0.98024 1.20057 0.81500 0.83416 0.85260 1.90740 1.64459 1.31230 1.55722 1.47136 1.43739 1.07345 1.33856 1.21957 0.91490 1.01930 0.85862 1.19423 0.96021 0.97327 0.89709 1.21146 0.95636 1.47693 0.91184 0.92564 1.24985 0.95095 0.95250 0.98968 1.69978 1.13914 1.48309 1.21104 0.86527 0.81230 0.77591 0.82592 1.19688 1.21067 1.21016 0.91346 0.90194 0.91471 0.91134 0.91224 0.90063 0.91138 0.90950 0.89235 0.93244 0.90361 0.88969 0.90740 0.89580 0.88290 0.88551 0.90638 0.91922 0.96063 0.96240 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.29 37.16 0.38 -0.50 16 2 C 0.06 0.51 6.19 37.16 0.23 0.74 16 3 O -0.36 -3.72 10.22 -39.26 -0.40 -4.12 16 4 C 0.46 5.32 5.71 36.01 0.21 5.52 16 5 O -0.49 -6.84 15.60 -18.75 -0.29 -7.14 16 6 C 0.08 0.79 1.90 -68.86 -0.13 0.66 16 7 H 0.09 0.79 5.71 -51.93 -0.30 0.50 16 8 C -0.14 -1.05 8.60 37.16 0.32 -0.73 16 9 N -0.50 -5.65 4.78 -217.02 -1.04 -6.69 16 10 C 0.05 0.58 5.59 -2.78 -0.02 0.56 16 11 C -0.15 -2.23 4.65 -25.12 -0.12 -2.35 16 12 C 0.15 2.04 3.07 -67.60 -0.21 1.83 16 13 H 0.09 1.25 8.03 -51.93 -0.42 0.84 16 14 C 0.07 0.78 2.67 -66.43 -0.18 0.60 16 15 H 0.11 1.02 8.08 -51.93 -0.42 0.60 16 16 C -0.16 -1.61 3.61 -26.73 -0.10 -1.71 16 17 C -0.13 -1.56 6.08 -28.11 -0.17 -1.73 16 18 C 0.51 9.06 7.47 -11.67 -0.09 8.97 16 19 O -0.54 -12.31 16.24 5.56 0.09 -12.22 16 20 N -0.59 -10.24 2.55 -166.43 -0.43 -10.67 16 21 C 0.11 2.29 5.05 -4.04 -0.02 2.27 16 22 C 0.01 0.34 5.08 -27.89 -0.14 0.20 16 23 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 24 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 25 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 26 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 27 Si 0.89 21.93 29.54 -169.99 -5.02 16.90 16 28 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 29 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 30 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 35 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 36 H 0.08 0.51 5.96 -51.93 -0.31 0.20 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.05 0.63 6.73 -51.93 -0.35 0.28 16 41 H 0.08 1.31 7.60 -51.93 -0.39 0.91 16 42 H 0.09 1.49 7.56 -51.93 -0.39 1.10 16 43 H 0.07 0.87 6.69 -51.93 -0.35 0.53 16 44 H 0.09 0.65 4.87 -51.93 -0.25 0.39 16 45 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.08 1.73 7.18 -51.93 -0.37 1.35 16 48 H 0.06 1.22 7.91 -51.93 -0.41 0.81 16 49 H 0.02 0.56 6.18 -51.93 -0.32 0.23 16 50 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 392.15 15.07 5.91 5.91 Total: -1.00 -34.85 392.15 -9.35 -44.21 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -8.47 Total: -0.77 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -0.44 Total: 0.88 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: -0.73 Total: -43.65 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.60 Total: -23.48 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.85 -9.35 -44.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273914655.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.358 kcal (2) G-P(sol) polarization free energy of solvation -34.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds