Wall clock time and date at job start Tue Mar 31 2020 20:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45200 * 109.47088 * 2 1 4 4 C 1.34229 * 117.00286 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99631 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.00006 * 180.02562 * 4 3 2 7 7 H 1.08996 * 109.47126 * 327.33315 * 6 4 3 8 8 C 1.53000 * 109.46918 * 87.33669 * 6 4 3 9 9 N 1.46906 * 109.46704 * 207.33164 * 6 4 3 10 10 C 1.47458 * 110.99982 * 52.66187 * 9 6 4 11 11 C 1.54412 * 107.24069 * 123.25931 * 10 9 6 12 12 C 1.54649 * 102.91205 * 21.72112 * 11 10 9 13 13 H 1.08994 * 109.97997 * 81.77407 * 12 11 10 14 14 C 1.48172 * 110.99597 * 173.50392 * 9 6 4 15 15 H 1.08993 * 111.87070 * 93.57619 * 14 9 6 16 16 C 1.53134 * 108.06380 * 330.91393 * 14 9 6 17 17 C 1.52875 * 109.40262 * 182.84208 * 16 14 9 18 18 C 1.50365 * 109.25911 * 53.23903 * 17 16 14 19 19 O 1.21280 * 118.87255 * 157.76802 * 18 17 16 20 20 N 1.33612 * 122.32514 * 336.88873 * 18 17 16 21 21 C 1.46504 * 117.46252 * 180.49253 * 20 18 17 22 22 C 1.52994 * 109.47446 * 270.78990 * 21 20 18 23 23 C 1.50697 * 109.47133 * 180.02562 * 22 21 20 24 24 H 1.08001 * 119.99948 * 0.02562 * 23 22 21 25 25 C 1.37882 * 120.00029 * 179.97438 * 23 22 21 26 26 N 1.31516 * 119.99805 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 119.99891 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47352 * 0.02562 * 27 25 23 29 29 H 1.48504 * 109.47166 * 120.00224 * 27 25 23 30 30 H 1.48505 * 109.47280 * 240.00079 * 27 25 23 31 31 H 1.09001 * 109.47102 * 60.00009 * 1 2 3 32 32 H 1.08999 * 109.46949 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.47399 * 300.00175 * 1 2 3 34 34 H 1.09001 * 109.47557 * 239.99994 * 2 1 3 35 35 H 1.09000 * 109.47370 * 119.99515 * 2 1 3 36 36 H 1.09000 * 109.46721 * 174.05129 * 8 6 4 37 37 H 1.09006 * 109.46920 * 294.04792 * 8 6 4 38 38 H 1.08999 * 109.47718 * 54.05095 * 8 6 4 39 39 H 1.09002 * 109.88915 * 242.66911 * 10 9 6 40 40 H 1.09004 * 109.88931 * 3.69627 * 10 9 6 41 41 H 1.09001 * 110.72540 * 263.36590 * 11 10 9 42 42 H 1.09001 * 110.72580 * 140.07290 * 11 10 9 43 43 H 1.09006 * 109.48246 * 302.82189 * 16 14 9 44 44 H 1.08997 * 109.47906 * 62.86421 * 16 14 9 45 45 H 1.08999 * 109.50768 * 173.16959 * 17 16 14 46 46 H 1.08990 * 109.50970 * 293.25691 * 17 16 14 47 47 H 1.09004 * 109.46826 * 30.79179 * 21 20 18 48 48 H 1.09005 * 109.46474 * 150.78999 * 21 20 18 49 49 H 1.09004 * 109.47263 * 299.99922 * 22 21 20 50 50 H 1.08994 * 109.47384 * 60.00020 * 22 21 20 51 51 H 0.96995 * 119.99535 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9376 0.0012 7 1 3.2603 3.6041 -0.5536 8 6 4.0530 3.4340 1.4423 9 7 5.2450 2.9199 -0.6343 10 6 5.1850 2.2840 -1.9634 11 6 5.7279 3.3067 -2.9850 12 6 6.5772 4.2549 -2.1068 13 1 7.5604 3.8187 -1.9308 14 6 5.7764 4.2940 -0.7923 15 1 6.4094 4.5835 0.0465 16 6 4.5882 5.2483 -0.9425 17 6 5.1037 6.6680 -1.1786 18 6 6.0645 6.6608 -2.3352 19 8 6.2660 7.6951 -2.9356 20 7 6.7176 5.5587 -2.7147 21 6 7.6371 5.6751 -3.8493 22 6 6.8777 5.4093 -5.1506 23 6 7.8237 5.5284 -6.3176 24 1 8.8628 5.7692 -6.1480 25 6 7.3629 5.3290 -7.6017 26 7 6.0977 5.0353 -7.8081 27 14 8.5354 5.4774 -9.0483 28 1 9.8939 5.8141 -8.5519 29 1 8.5827 4.1869 -9.7816 30 1 8.0619 6.5485 -9.9614 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 4.5658 4.3958 1.4495 37 1 3.0612 3.5477 1.8800 38 1 4.6263 2.7122 2.0241 39 1 5.8031 1.3863 -1.9732 40 1 4.1537 2.0267 -2.2051 41 1 4.9102 3.8494 -3.4593 42 1 6.3493 2.8130 -3.7321 43 1 3.9773 4.9376 -1.7901 44 1 3.9872 5.2263 -0.0335 45 1 4.2654 7.3265 -1.4060 46 1 5.6135 7.0237 -0.2834 47 1 8.0589 6.6799 -3.8735 48 1 8.4405 4.9462 -3.7420 49 1 6.4559 4.4044 -5.1264 50 1 6.0743 6.1380 -5.2578 51 1 5.7737 4.8946 -8.7115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273914655.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:29 Heat of formation + Delta-G solvation = -129.808329 kcal Electronic energy + Delta-G solvation = -31366.574430 eV Core-core repulsion = 27265.294739 eV Total energy + Delta-G solvation = -4101.279692 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.53291 -41.45926 -39.83956 -37.72930 -36.96625 -35.39332 -34.55105 -34.01102 -32.53373 -31.33457 -29.64491 -29.43938 -26.97046 -25.98852 -24.88706 -23.97829 -23.47857 -22.76778 -22.25323 -20.83497 -19.22463 -18.86093 -18.57205 -18.07591 -17.70949 -17.52845 -16.98318 -16.96421 -16.60670 -16.10308 -15.89699 -15.29123 -15.18180 -14.87004 -14.81633 -14.45719 -14.35955 -14.24315 -13.83961 -13.66910 -13.61012 -13.43181 -13.34987 -13.20230 -12.90261 -12.86345 -12.79135 -12.57761 -12.54047 -12.50453 -12.38899 -12.27755 -12.01847 -11.87504 -11.75004 -11.62532 -11.53315 -11.36012 -11.31064 -10.59621 -10.55905 -9.64666 -9.45377 -8.23948 -6.35174 1.10566 1.36609 1.37908 1.49712 1.51217 1.65517 2.06418 2.39268 2.73588 3.09722 3.29584 3.39638 3.62015 3.68687 3.74266 3.95402 3.98510 4.01914 4.06877 4.07508 4.10745 4.16054 4.28862 4.33582 4.35951 4.40715 4.63097 4.69776 4.72694 4.74938 4.79997 4.85186 4.85918 4.89888 4.91716 4.93944 4.97278 5.05701 5.13826 5.18671 5.29291 5.34317 5.43762 5.47691 5.60624 5.65789 5.74152 5.82030 6.17870 6.61083 6.73201 6.80368 7.23840 7.33751 8.88124 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013332 B = 0.003041 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.747954 B = 9205.376091 C =10458.475326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 O -0.363 6.363 4 C 0.463 3.537 5 O -0.518 6.518 6 C 0.078 3.922 7 H 0.097 0.903 8 C -0.139 4.139 9 N -0.502 5.502 10 C 0.059 3.941 11 C -0.148 4.148 12 C 0.139 3.861 13 H 0.105 0.895 14 C 0.083 3.917 15 H 0.139 0.861 16 C -0.153 4.153 17 C -0.117 4.117 18 C 0.498 3.502 19 O -0.603 6.603 20 N -0.587 5.587 21 C 0.123 3.877 22 C 0.027 3.973 23 C -0.542 4.542 24 H 0.062 0.938 25 C 0.001 3.999 26 N -0.932 5.932 27 Si 0.967 3.033 28 H -0.260 1.260 29 H -0.274 1.274 30 H -0.281 1.281 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.045 0.955 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.127 0.873 45 H 0.105 0.895 46 H 0.134 0.866 47 H 0.055 0.945 48 H 0.082 0.918 49 H 0.010 0.990 50 H -0.030 1.030 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.939 -8.044 23.940 27.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.279 6.279 4 C 0.306 3.694 5 O -0.406 6.406 6 C -0.032 4.032 7 H 0.114 0.886 8 C -0.196 4.196 9 N -0.227 5.227 10 C -0.069 4.069 11 C -0.187 4.187 12 C 0.034 3.966 13 H 0.123 0.877 14 C -0.024 4.024 15 H 0.157 0.843 16 C -0.191 4.191 17 C -0.157 4.157 18 C 0.288 3.712 19 O -0.484 6.484 20 N -0.316 5.316 21 C 0.000 4.000 22 C -0.011 4.011 23 C -0.580 4.580 24 H 0.080 0.920 25 C -0.197 4.197 26 N -0.572 5.572 27 Si 0.791 3.209 28 H -0.184 1.184 29 H -0.200 1.200 30 H -0.207 1.207 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.119 0.881 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.145 0.855 45 H 0.124 0.876 46 H 0.152 0.848 47 H 0.073 0.927 48 H 0.100 0.900 49 H 0.029 0.971 50 H -0.011 1.011 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.464 -8.205 23.893 26.977 hybrid contribution -0.124 0.115 -2.335 2.341 sum -9.588 -8.090 21.558 24.942 Atomic orbital electron populations 1.21823 0.90454 1.04336 1.03749 1.23265 0.97041 0.79211 1.02434 1.86508 1.23969 1.33735 1.83729 1.23910 0.80719 0.92938 0.71875 1.90670 1.60924 1.43774 1.45220 1.21778 0.90714 0.89568 1.01114 0.88561 1.21926 1.04432 1.03194 0.90091 1.63745 1.22022 1.16749 1.20208 1.22684 1.00027 0.97517 0.86711 1.23113 0.99779 0.97469 0.98377 1.21618 1.00747 0.81789 0.92448 0.87741 1.22854 0.95808 0.86860 0.96927 0.84301 1.22475 0.98670 0.93492 1.04504 1.21606 0.98375 0.99348 0.96377 1.21282 0.81443 0.82287 0.86162 1.90710 1.66360 1.33329 1.58048 1.47130 1.42926 1.08936 1.32657 1.21492 0.91989 1.01181 0.85356 1.19203 0.94694 0.95010 0.92146 1.21597 0.96284 1.47729 0.92398 0.92007 1.25967 0.96893 0.94622 1.02218 1.70115 1.15966 1.49088 1.22001 0.85375 0.79167 0.77873 0.78487 1.18417 1.19961 1.20719 0.91724 0.88331 0.90737 0.92042 0.90889 0.88062 0.89250 0.91652 0.89869 0.93645 0.92998 0.91259 0.92686 0.85462 0.87628 0.84800 0.92652 0.89965 0.97148 1.01129 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 71.98 0.74 -0.71 16 2 C 0.05 0.84 6.19 71.98 0.45 1.29 16 3 O -0.36 -6.99 10.22 -51.41 -0.53 -7.51 16 4 C 0.46 9.99 5.71 71.24 0.41 10.40 16 5 O -0.52 -14.30 15.60 21.97 0.34 -13.96 16 6 C 0.08 1.30 1.90 44.17 0.08 1.39 16 7 H 0.10 1.47 5.71 -2.39 -0.01 1.46 16 8 C -0.14 -1.44 8.60 71.98 0.62 -0.82 16 9 N -0.50 -10.24 4.78 -840.51 -4.02 -14.26 16 10 C 0.06 1.50 5.59 86.68 0.48 1.98 16 11 C -0.15 -4.54 4.65 31.64 0.15 -4.39 16 12 C 0.14 3.78 3.07 46.25 0.14 3.93 16 13 H 0.10 2.66 8.03 -2.39 -0.02 2.64 16 14 C 0.08 1.56 2.67 45.04 0.12 1.68 16 15 H 0.14 1.91 8.08 -2.39 -0.02 1.89 16 16 C -0.15 -2.62 3.61 30.60 0.11 -2.51 16 17 C -0.12 -2.48 6.08 29.70 0.18 -2.30 16 18 C 0.50 17.71 7.47 87.73 0.66 18.37 16 19 O -0.60 -28.28 16.24 -3.03 -0.05 -28.33 16 20 N -0.59 -20.67 2.55 -799.50 -2.04 -22.72 16 21 C 0.12 5.38 5.05 86.38 0.44 5.82 16 22 C 0.03 1.50 5.08 29.85 0.15 1.66 16 23 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 24 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 25 C 0.00 0.05 5.46 84.66 0.46 0.51 16 26 N -0.93 -58.25 13.29 21.45 0.28 -57.96 16 27 Si 0.97 45.59 29.54 68.60 2.03 47.62 16 28 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 29 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 30 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 35 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 36 H 0.10 0.66 5.96 -2.39 -0.01 0.65 16 37 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.05 1.18 6.73 -2.38 -0.02 1.17 16 41 H 0.05 1.85 7.60 -2.39 -0.02 1.84 16 42 H 0.07 2.40 7.56 -2.39 -0.02 2.39 16 43 H 0.05 1.20 6.69 -2.38 -0.02 1.18 16 44 H 0.13 1.22 4.87 -2.39 -0.01 1.21 16 45 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.05 2.65 7.18 -2.38 -0.02 2.63 16 48 H 0.08 3.25 7.91 -2.38 -0.02 3.23 16 49 H 0.01 0.58 6.18 -2.38 -0.01 0.56 16 50 H -0.03 -1.91 8.14 -2.39 -0.02 -1.93 16 51 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -81.16 392.15 2.35 -78.80 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.92 Total: 13.66 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 5.42 Total: 4.66 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -5.78 Total: -94.94 kcal Atomic # 8 Polarization: -49.57 SS G_CDS: -0.23 Total: -49.80 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -81.16 2.35 -78.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273914655.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.004 kcal (2) G-P(sol) polarization free energy of solvation -81.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds