Wall clock time and date at job start Tue Mar 31 2020 22:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34223 * 116.99603 * 2 1 4 4 O 1.20828 * 120.00514 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00002 * 180.02562 * 3 2 1 6 6 N 1.46897 * 109.47310 * 179.97438 * 5 3 2 7 7 C 1.47980 * 111.00326 * 293.95502 * 6 5 3 8 8 C 1.50466 * 112.72686 * 191.39442 * 7 6 5 9 9 C 1.54190 * 108.45117 * 93.81792 * 8 7 6 10 10 C 1.46063 * 112.36450 * 281.27999 * 9 8 7 11 11 C 1.54887 * 112.07210 * 182.09469 * 10 9 8 12 12 C 1.54422 * 101.84331 * 146.87341 * 11 10 9 13 13 N 1.46728 * 105.46954 * 334.42730 * 12 11 10 14 14 C 1.46499 * 124.32932 * 196.93529 * 13 12 11 15 15 C 1.53004 * 109.47198 * 90.00229 * 14 13 12 16 16 C 1.50700 * 109.47208 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99770 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00083 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00147 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00278 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47228 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46793 * 300.00001 * 20 18 16 23 23 H 1.48500 * 109.47000 * 60.00094 * 20 18 16 24 24 C 1.34297 * 111.33695 * 17.20267 * 13 12 11 25 25 O 1.21284 * 124.90263 * 179.60758 * 24 13 12 26 26 C 1.54541 * 112.11490 * 60.86969 * 10 9 8 27 27 C 1.48043 * 110.99754 * 165.21576 * 6 5 3 28 28 H 1.09005 * 109.46990 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47193 * 299.99168 * 1 2 3 30 30 H 1.08996 * 109.47601 * 60.00241 * 1 2 3 31 31 H 1.08998 * 109.46619 * 59.99934 * 5 3 2 32 32 H 1.09002 * 109.46812 * 300.00432 * 5 3 2 33 33 H 1.09003 * 108.82648 * 70.55894 * 7 6 5 34 34 H 1.08994 * 108.82941 * 312.23931 * 7 6 5 35 35 H 1.09000 * 109.64147 * 334.13242 * 8 7 6 36 36 H 1.09003 * 109.81170 * 213.60470 * 8 7 6 37 37 H 1.08998 * 108.89805 * 160.53559 * 9 8 7 38 38 H 1.09002 * 108.90308 * 42.02617 * 9 8 7 39 39 H 1.09003 * 110.95227 * 28.73934 * 11 10 9 40 40 H 1.08998 * 110.99334 * 265.02883 * 11 10 9 41 41 H 1.08999 * 110.24220 * 215.42728 * 12 11 10 42 42 H 1.08998 * 110.31565 * 93.46405 * 12 11 10 43 43 H 1.09000 * 109.47602 * 330.00177 * 14 13 12 44 44 H 1.08998 * 109.47492 * 210.00165 * 14 13 12 45 45 H 1.08994 * 109.47074 * 60.00190 * 15 14 13 46 46 H 1.08998 * 109.47285 * 300.00026 * 15 14 13 47 47 H 0.97005 * 119.99661 * 359.97438 * 19 18 16 48 48 H 1.08997 * 109.60857 * 41.73531 * 26 10 9 49 49 H 1.09000 * 109.60455 * 162.24194 * 26 10 9 50 50 H 1.09007 * 108.78408 * 205.63130 * 27 6 5 51 51 H 1.08992 * 108.78973 * 323.83321 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9827 2.6837 -0.0011 7 6 3.5947 3.3510 -1.2636 8 6 4.2327 4.7040 -1.4258 9 6 5.5315 4.5368 -2.2397 10 6 6.6350 4.0308 -1.4275 11 6 7.9493 3.9145 -2.2388 12 6 9.0135 4.2293 -1.1651 13 7 8.3276 5.0546 -0.1644 14 6 9.0109 5.8746 0.8391 15 6 9.2548 7.2751 0.2731 16 6 9.9571 8.1189 1.3055 17 1 10.2051 7.6982 2.2688 18 6 10.2830 9.4278 1.0204 19 7 9.9806 9.9402 -0.1525 20 14 11.1542 10.4735 2.2998 21 1 11.3908 11.8327 1.7506 22 1 10.3098 10.5712 3.5175 23 1 12.4550 9.8477 2.6483 24 6 6.9934 4.9575 -0.2823 25 8 6.1907 5.5307 0.4235 26 6 6.3275 2.6389 -0.8305 27 6 5.4148 2.8136 0.3510 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 3.9556 0.7810 -0.8908 32 1 3.9564 0.7806 0.8891 33 1 2.5112 3.4685 -1.2808 34 1 3.8913 2.7194 -2.1009 35 1 4.4657 5.1192 -0.4453 36 1 3.5526 5.3721 -1.9544 37 1 5.8140 5.5035 -2.6563 38 1 5.3480 3.8413 -3.0587 39 1 7.9773 4.6500 -3.0428 40 1 8.0780 2.9058 -2.6313 41 1 9.8424 4.7827 -1.6065 42 1 9.3759 3.3077 -0.7097 43 1 9.9655 5.4150 1.0953 44 1 8.3910 5.9468 1.7327 45 1 8.3003 7.7348 0.0170 46 1 9.8747 7.2030 -0.6205 47 1 9.5285 9.3971 -0.8170 48 1 5.8387 2.0186 -1.5817 49 1 7.2553 2.1656 -0.5091 50 1 5.5824 3.8012 0.7809 51 1 5.6619 2.0610 1.0997 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273931556.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:03 Heat of formation + Delta-G solvation = -105.923165 kcal Electronic energy + Delta-G solvation = -31084.112747 eV Core-core repulsion = 26983.868794 eV Total energy + Delta-G solvation = -4100.243953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.53489 -40.61974 -38.18296 -36.61071 -36.28245 -34.98372 -33.55955 -32.40105 -30.82767 -29.53736 -28.39148 -27.53561 -25.56552 -25.26751 -24.54029 -22.62538 -21.97717 -21.35205 -20.63518 -19.78608 -18.48239 -17.95291 -16.96416 -16.91668 -16.81650 -16.34386 -16.17641 -15.68959 -15.38670 -14.81602 -14.38672 -14.24010 -13.86675 -13.72696 -13.54238 -13.48436 -13.27918 -13.07256 -12.88221 -12.82997 -12.56571 -12.36144 -12.26951 -12.12991 -11.93057 -11.65228 -11.61759 -11.40887 -11.18409 -11.09945 -10.97510 -10.83344 -10.64385 -10.49648 -10.29505 -10.13717 -10.12034 -10.06219 -9.06846 -8.67787 -8.34806 -8.32699 -8.09243 -6.38815 -4.08544 2.00560 2.32829 2.90853 3.40650 3.45154 3.46958 3.64659 3.71267 4.18031 4.38244 4.51061 4.54629 4.55235 4.77786 4.78655 4.86468 4.90083 4.94204 4.95535 4.98193 5.15419 5.19096 5.24703 5.29835 5.35151 5.39510 5.50730 5.56551 5.62051 5.67310 5.77849 5.79246 5.90568 5.93236 5.95913 6.10377 6.11081 6.23293 6.30660 6.33471 6.52389 6.62928 6.85505 6.92030 7.00213 7.27013 7.43769 7.58739 7.67060 8.13309 8.41875 8.57824 8.84137 9.64350 11.02021 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021852 B = 0.002405 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.014882 B =11637.644602 C =12041.495448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.366 6.366 3 C 0.457 3.543 4 O -0.485 6.485 5 C 0.066 3.934 6 N -0.530 5.530 7 C 0.064 3.936 8 C -0.140 4.140 9 C -0.097 4.097 10 C -0.086 4.086 11 C -0.127 4.127 12 C 0.101 3.899 13 N -0.609 5.609 14 C 0.134 3.866 15 C 0.000 4.000 16 C -0.603 4.603 17 H 0.050 0.950 18 C 0.016 3.984 19 N -0.910 5.910 20 Si 1.070 2.930 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.288 1.288 24 C 0.521 3.479 25 O -0.517 6.517 26 C -0.129 4.129 27 C 0.030 3.970 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.026 0.974 35 H 0.114 0.886 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.012 0.988 46 H 0.007 0.993 47 H 0.268 0.732 48 H 0.071 0.929 49 H 0.076 0.924 50 H 0.118 0.882 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.675 -23.917 -5.520 27.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.283 6.283 3 C 0.298 3.702 4 O -0.370 6.370 5 C -0.063 4.063 6 N -0.256 5.256 7 C -0.063 4.063 8 C -0.177 4.177 9 C -0.135 4.135 10 C -0.090 4.090 11 C -0.165 4.165 12 C -0.023 4.023 13 N -0.341 5.341 14 C 0.014 3.986 15 C -0.038 4.038 16 C -0.642 4.642 17 H 0.069 0.931 18 C -0.188 4.188 19 N -0.545 5.545 20 Si 0.898 3.102 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.214 1.214 24 C 0.308 3.692 25 O -0.394 6.394 26 C -0.168 4.168 27 C -0.096 4.096 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.132 0.868 33 H 0.103 0.897 34 H 0.044 0.956 35 H 0.132 0.868 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.030 0.970 46 H 0.025 0.975 47 H 0.079 0.921 48 H 0.090 0.910 49 H 0.094 0.906 50 H 0.135 0.865 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.883 -21.514 -4.451 24.977 hybrid contribution -0.238 -2.019 -1.055 2.290 sum -12.121 -23.533 -5.507 27.038 Atomic orbital electron populations 1.23233 0.76318 1.03524 1.02611 1.86484 1.23461 1.33783 1.84584 1.23793 0.92123 0.81331 0.72943 1.90665 1.66794 1.36021 1.43508 1.21603 0.87916 0.92547 1.04272 1.61529 1.17796 1.10213 1.36089 1.21949 1.01508 0.95010 0.87803 1.21646 0.95410 0.96389 1.04299 1.20368 0.94240 1.01408 0.97480 1.20466 0.96583 0.96131 0.95827 1.22853 0.92983 1.03071 0.97600 1.22004 0.96060 0.94966 0.89240 1.48518 1.06457 1.45430 1.33718 1.21660 0.95470 0.91935 0.89530 1.19519 0.96605 0.90893 0.96797 1.21901 1.42002 0.99027 1.01236 0.93123 1.25871 0.96608 0.96309 1.00011 1.70781 1.38451 1.39793 1.05520 0.83525 0.75937 0.76073 0.74627 1.20747 1.21318 1.21414 1.20584 0.82572 0.81109 0.84938 1.90597 1.52134 1.48331 1.48379 1.21945 1.00845 0.94814 0.99217 1.22497 0.83922 1.06589 0.96606 0.88203 0.91842 0.91983 0.90978 0.86771 0.89665 0.95605 0.86818 0.91129 0.91543 0.91657 0.89989 0.89474 0.90217 0.91535 0.91495 0.90830 0.96970 0.97479 0.92141 0.91028 0.90567 0.86455 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.37 -3.41 10.57 -39.24 -0.41 -3.82 16 3 C 0.46 5.02 7.73 36.01 0.28 5.30 16 4 O -0.48 -6.86 14.08 -18.75 -0.26 -7.13 16 5 C 0.07 0.61 5.49 -4.98 -0.03 0.58 16 6 N -0.53 -6.47 4.41 -237.39 -1.05 -7.52 16 7 C 0.06 0.78 4.50 -4.49 -0.02 0.76 16 8 C -0.14 -1.91 5.55 -27.37 -0.15 -2.06 16 9 C -0.10 -1.19 4.14 -29.40 -0.12 -1.31 16 10 C -0.09 -1.08 0.57 -156.70 -0.09 -1.16 16 11 C -0.13 -1.33 6.03 -24.99 -0.15 -1.48 16 12 C 0.10 1.28 7.07 -3.17 -0.02 1.26 16 13 N -0.61 -10.54 2.93 -172.37 -0.50 -11.04 16 14 C 0.13 2.80 5.87 -4.04 -0.02 2.78 16 15 C 0.00 -0.01 4.61 -27.88 -0.13 -0.14 16 16 C -0.60 -17.27 9.11 -34.44 -0.31 -17.59 16 17 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 18 C 0.02 0.47 5.46 -17.82 -0.10 0.38 16 19 N -0.91 -28.30 13.65 55.43 0.76 -27.54 16 20 Si 1.07 25.51 29.90 -169.99 -5.08 20.43 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.52 9.01 5.69 -10.75 -0.06 8.95 16 25 O -0.52 -10.85 12.89 5.55 0.07 -10.78 16 26 C -0.13 -1.31 4.39 -27.26 -0.12 -1.43 16 27 C 0.03 0.36 4.99 -4.53 -0.02 0.34 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 31 H 0.07 0.53 7.82 -51.93 -0.41 0.13 16 32 H 0.11 0.86 7.67 -51.93 -0.40 0.46 16 33 H 0.09 1.16 6.11 -51.93 -0.32 0.84 16 34 H 0.03 0.27 6.39 -51.93 -0.33 -0.06 16 35 H 0.11 1.96 4.61 -51.93 -0.24 1.72 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.89 8.12 -51.93 -0.42 0.46 16 38 H 0.06 0.65 7.51 -51.93 -0.39 0.26 16 39 H 0.08 0.87 7.97 -51.93 -0.41 0.46 16 40 H 0.09 0.66 7.85 -51.93 -0.41 0.25 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.07 1.63 7.91 -51.93 -0.41 1.22 16 45 H 0.01 0.35 8.01 -51.93 -0.42 -0.07 16 46 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 47 H 0.27 8.37 7.22 -40.82 -0.29 8.07 16 48 H 0.07 0.63 6.87 -51.93 -0.36 0.27 16 49 H 0.08 0.69 7.72 -51.93 -0.40 0.29 16 50 H 0.12 1.88 3.83 -51.92 -0.20 1.68 16 51 H 0.07 0.71 7.56 -51.93 -0.39 0.32 16 LS Contribution 387.40 15.07 5.84 5.84 Total: -1.00 -35.31 387.40 -9.03 -44.34 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -8.37 Total: 0.75 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -0.01 Total: -3.52 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -0.80 Total: -46.10 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.61 Total: -21.73 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.08 Total: 20.43 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.31 -9.03 -44.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273931556.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.587 kcal (2) G-P(sol) polarization free energy of solvation -35.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds